FvH4_1g07390

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013070
Physical Location & Seq
Reverse (-)
3916716 .. 3918767
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07390.t1

Sequence Viewer

Length: 1077 bp
ATGGCTCCGCCTTTTCTTCAGCTCAGCACTATTGGAAGCCATGATCATGATCTTGATCAGTATGATCATCATCACCATGACCTCTTCAATTATCTTGAACCTCAATCTTCGTTTTCCTCCACTACTTCCTCTCTTTCTAGTCCCATCTTCTTAAGTCCAGCTCAAGTCCAAGGACCAATATCTGATCACTACTATAGAGAACCGCAAGACTTTCAATTCCAGCTACTGGAGGCTGATCACATTGTTTCGTACGGCGGATCATGTGATCACGATCAAACCCTTGGAAATGAAGGTGAGAAAGGTACTGTGATCAATTTAAGTATTGATCCCAAGCATGGAGCTGATGATGATCACAGAGATCATGAAAATCGAAGTGCTCGTGCTGAGAATATTTCGGTTAAGTGGATGTCTTCGAAGATGAGGATCATGAGGAAGATGACCAACCCGGATCAAACAATTAGCAGTCATAATAATACTACTGCTGCTACTAATGATGGTACTACTGCACGAGTTAACTTCTCAGCATCTCACAACTTTGAAGAGCAGAAGCTGCATCCATTATCACCTCTGGGAACTGACAGCTCATACAGCACGAACCCGATTAGGGTTTGCTCTGATTGCAACACAACCAAGACACCTCTATGGAGAAGTGGACCTAGAGGTCCTAAGTCACTATGTAACGCCTGTGGAATTCGGCAAAGGAAAGCAAGGCGGGCCATGGCGGCGGCAGCGGCGGCAGCAAACAGTACAACCCTAGCGGTGGAGGCGGCGCCATCCATGATCAAGACGAGTAAGGTGAAACTTAAAGACAACAAAACTATTCCATTCAAGAAAAGGTGCCACAAACTTGCTATCTCCCCTTCACCTCGAGGCAAATCGAAGACCAAGCTTCGTTTCGAAGATTTCTCAGTTAGCAGCATGAATCAGAATTCAGGCACTGATCCTCCTCCTCCTCCTACTACTACTACTACTACCACCACCACCACCACCACAACCTTTCAACGAGTTTTCCCTCAAGACGAGAAGGAAGCCGCGATCCTGCTAATGGCCCTATCTTGTGGACTAGTTCGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

359

Amino Acids

39.37

Weight (kDa)

8.61

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 204 - 238 1.3e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 660
AbsI CCTCGAGG 1 cut(s) 867
AccB1I GGYRCC 2 cut(s) 769, 837
AccB7I CCANNNNNTGG 1 cut(s) 226
AccII CGCG 1 cut(s) 1034
AclWI GGATC 6 cut(s) 265, 320, 431, 456, 935, 1030
AcsI RAATTY 2 cut(s) 690, 928
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 4 cut(s) 251, 304, 499, 748
AfiI CCNNNNNNNGG 5 cut(s) 226, 335, 604, 760, 1045
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 6 cut(s) 88, 98, 215, 539, 829, 1001
AhlI ACTAGT 1 cut(s) 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 7 cut(s) 22, 161, 223, 341, 550, 582, 889
AluI AGCT 7 cut(s) 22, 161, 223, 341, 550, 582, 889
Alw21I GWGCWC 1 cut(s) 379
AlwI GGATC 6 cut(s) 265, 320, 431, 456, 935, 1030
AlwNI CAGNNNCTG 3 cut(s) 226, 550, 938
Ama87I CYCGRG 1 cut(s) 867
AoxI GGCC 2 cut(s) 714, 1047
ApeKI GCWGC 5 cut(s) 482, 550, 728, 737, 915
ApoI RAATTY 2 cut(s) 690, 928
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 5 cut(s) 173, 653, 662, 714, 1048
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 5 cut(s) 65, 305, 555, 808, 855
AsuII TTCGAA 2 cut(s) 413, 897
AvaI CYCGRG 1 cut(s) 867
AvaII GGWCC 3 cut(s) 173, 653, 662
BanI GGYRCC 2 cut(s) 769, 837
BauI CACGAG 2 cut(s) 378, 507
BbsI GAAGAC 2 cut(s) 402, 887
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 5 cut(s) 469, 537, 740, 749, 927
BccI CCATC 3 cut(s) 152, 488, 781
BceAI ACGGC 1 cut(s) 268
BclI TGATCA 9 cut(s) 43, 55, 64, 184, 235, 265, 309, 349, 780
BcnI CCSGG 1 cut(s) 446
BcuI ACTAGT 1 cut(s) 1063
BfaI CTAG 4 cut(s) 138, 657, 755, 1064
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 773
BfrI CTTAAG 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 722
BlpI GCTNAGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 3 cut(s) 173, 653, 662
BmeT110I CYCGRG 1 cut(s) 867
BmgT120I GGNCC 5 cut(s) 173, 653, 662, 714, 1048
BmiI GGNNCC 3 cut(s) 6, 771, 839
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 533, 562
BpiI GAAGAC 2 cut(s) 402, 887
BpmI CTGGAG 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 2 cut(s) 413, 897
BpuEI CTTGAG 2 cut(s) 147, 999
BpuMI CCSGG 1 cut(s) 446
BsaBI GATNNNNATC 6 cut(s) 48, 54, 69, 270, 348, 422
BsaHI GRCGYC 1 cut(s) 770
BsaJI CCNNGG 3 cut(s) 169, 280, 717
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 335, 604, 760, 1045
Bse1I ACTGG 1 cut(s) 231
Bse8I GATNNNNATC 6 cut(s) 48, 54, 69, 270, 348, 422
BseDI CCNNGG 3 cut(s) 169, 280, 717
BseGI GGATG 3 cut(s) 411, 553, 773
BseJI GATNNNNATC 6 cut(s) 48, 54, 69, 270, 348, 422
BseLI CCNNNNNNNGG 5 cut(s) 226, 335, 604, 760, 1045
BseMII CTCAG 4 cut(s) 37, 375, 534, 921
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 936, 939, 942
BseXI GCAGC 5 cut(s) 469, 537, 740, 749, 927
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 1034
BshFI GGCC 2 cut(s) 716, 1049
BshNI GGYRCC 2 cut(s) 769, 837
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 1 cut(s) 446
BsiWI CGTACG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 5 cut(s) 226, 335, 604, 760, 1045
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 716, 1049
BsoBI CYCGRG 1 cut(s) 867
Bsp119I TTCGAA 2 cut(s) 413, 897
Bsp1286I GDGCHC 1 cut(s) 379
Bsp1720I GCTNAGC 1 cut(s) 23
Bsp19I CCATGG 1 cut(s) 717
BspANI GGCC 2 cut(s) 716, 1049
BspCNI CTCAG 4 cut(s) 36, 376, 533, 920
BspFNI CGCG 1 cut(s) 1034
BspHI TCATGA 3 cut(s) 46, 361, 426
BspLI GGNNCC 3 cut(s) 6, 771, 839
BspPI GGATC 6 cut(s) 265, 320, 431, 456, 935, 1030
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 2 cut(s) 413, 897
BspT107I GGYRCC 2 cut(s) 769, 837
BspTI CTTAAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 169, 280, 717
BssNI GRCGYC 1 cut(s) 770
BssSI CACGAG 2 cut(s) 378, 507
BssT1I CCWWGG 3 cut(s) 169, 280, 717
Bst2BI CACGAG 2 cut(s) 378, 507
Bst4CI ACNGT 2 cut(s) 307, 746
Bst6I CTCTTC 2 cut(s) 89, 534
BstACI GRCGYC 1 cut(s) 770
BstAFI CTTAAG 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 550
BstBI TTCGAA 2 cut(s) 413, 897
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 5 cut(s) 23, 384, 520, 666, 907
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 3 cut(s) 411, 553, 773
BstFNI CGCG 1 cut(s) 1034
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 5 cut(s) 469, 537, 740, 749, 927
BstV2I GAAGAC 2 cut(s) 402, 887
BsuRI GGCC 2 cut(s) 716, 1049
BtgI CCRYGG 1 cut(s) 717
BtsCI GGATG 3 cut(s) 411, 553, 773
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 1 cut(s) 714
CaiI CAGNNNCTG 3 cut(s) 226, 550, 938
CciI TCATGA 3 cut(s) 46, 361, 426
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 5 cut(s) 173, 653, 662, 714, 1048
Csp6I GTAC 4 cut(s) 250, 303, 498, 747
CviQI GTAC 4 cut(s) 250, 303, 498, 747
DdeI CTNAG 5 cut(s) 23, 384, 520, 666, 907
DinI GGCGCC 1 cut(s) 771
DrdI GACNNNNNNGTC 1 cut(s) 660
DseDI GACNNNNNNGTC 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 89, 534
EarI CTCTTC 2 cut(s) 89, 534
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 3 cut(s) 169, 280, 717
Eco47I GGWCC 3 cut(s) 173, 653, 662
Eco88I CYCGRG 1 cut(s) 867
EcoO109I RGGNCCY 1 cut(s) 662
EcoRI GAATTC 2 cut(s) 690, 928
EcoT14I CCWWGG 3 cut(s) 169, 280, 717
EgeI GGCGCC 1 cut(s) 771
EheI GGCGCC 1 cut(s) 771
ErhI CCWWGG 3 cut(s) 169, 280, 717
FaqI GGGAC 1 cut(s) 126
FauI CCCGC 1 cut(s) 705
FbaI TGATCA 9 cut(s) 43, 55, 64, 184, 235, 265, 309, 349, 780
FokI GGATG 3 cut(s) 418, 540, 760
FspBI CTAG 4 cut(s) 138, 657, 755, 1064
GlaI GCGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 2 cut(s) 716, 1049
HapII CCGG 1 cut(s) 446
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 770
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 1 cut(s) 922
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 1 cut(s) 446
HphI GGTGA 5 cut(s) 65, 305, 555, 808, 855
Hpy166II GTNNAC 3 cut(s) 514, 653, 1061
Hpy188I TCNGA 3 cut(s) 184, 616, 927
Hpy188III TCNNGA 9 cut(s) 47, 53, 95, 269, 362, 427, 784, 829, 1016
Hpy8I GTNNAC 3 cut(s) 514, 653, 1061
HpyAV CCTTC 3 cut(s) 284, 870, 1018
HpyCH4III ACNGT 2 cut(s) 307, 746
HpyCH4V TGCA 3 cut(s) 506, 553, 621
HpyF3I CTNAG 5 cut(s) 23, 384, 520, 666, 907
Hsp92I GRCGYC 1 cut(s) 770
HspAI GCGC 1 cut(s) 770
KasI GGCGCC 1 cut(s) 769
Ksp22I TGATCA 9 cut(s) 43, 55, 64, 184, 235, 265, 309, 349, 780
KspAI GTTAAC 1 cut(s) 514
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 2 cut(s) 10, 338
LpnPI CCDG 8 cut(s) 171, 212, 233, 459, 554, 697, 918, 1052
Lsp1109I GCAGC 5 cut(s) 469, 537, 740, 749, 927
LweI GCATC 2 cut(s) 533, 562
MaeI CTAG 4 cut(s) 138, 657, 755, 1064
MaeIII GTNAC 2 cut(s) 669, 677
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 6 cut(s) 88, 215, 313, 456, 690, 928
Mly113I GGCGCC 1 cut(s) 770
MseI TTAA 5 cut(s) 152, 317, 399, 513, 804
MslI CAYNNNNRTG 3 cut(s) 45, 75, 640
MspA1I CMGCKG 1 cut(s) 731
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 1034
NarI GGCGCC 1 cut(s) 770
NciI CCSGG 1 cut(s) 446
NcoI CCATGG 1 cut(s) 717
NlaIV GGNNCC 3 cut(s) 6, 771, 839
NmuCI GTSAC 1 cut(s) 669
NspV TTCGAA 2 cut(s) 413, 897
PaeR7I CTCGAG 1 cut(s) 867
PagI TCATGA 3 cut(s) 46, 361, 426
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PfeI GAWTC 1 cut(s) 922
Pfl23II CGTACG 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 226
PluTI GGCGCC 1 cut(s) 773
PpuMI RGGWCCY 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 662
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 6, 771, 839
PspPI GGNCC 5 cut(s) 173, 653, 662, 714, 1048
PspPPI RGGWCCY 1 cut(s) 662
PspXI VCTCGAGB 1 cut(s) 867
PstNI CAGNNNCTG 3 cut(s) 226, 550, 938
RsaI GTAC 4 cut(s) 251, 304, 499, 748
RsaNI GTAC 4 cut(s) 250, 303, 498, 747
RseI CAYNNNNRTG 3 cut(s) 45, 75, 640
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 5 cut(s) 152, 317, 399, 513, 804
Sau96I GGNCC 5 cut(s) 173, 653, 662, 714, 1048
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 2 cut(s) 533, 562
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 771
Sfr274I CTCGAG 1 cut(s) 867
SfuI TTCGAA 2 cut(s) 413, 897
SinI GGWCC 3 cut(s) 173, 653, 662
SlaI CTCGAG 1 cut(s) 867
SmiMI CAYNNNNRTG 3 cut(s) 45, 75, 640
SmlI CTYRAG 4 cut(s) 151, 162, 867, 1014
SmoI CTYRAG 4 cut(s) 151, 162, 867, 1014
SpeI ACTAGT 1 cut(s) 1063
Sse9I AATT 6 cut(s) 88, 215, 313, 456, 690, 928
SspDI GGCGCC 1 cut(s) 769
SspI AATATT 1 cut(s) 391
SspMI CTAG 4 cut(s) 138, 657, 755, 1064
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 3 cut(s) 169, 280, 717
TaaI ACNGT 2 cut(s) 307, 746
TaqI TCGA 6 cut(s) 370, 413, 868, 878, 897, 1069
TasI AATT 6 cut(s) 88, 215, 313, 456, 690, 928
TatI WGTACW 1 cut(s) 746
TauI GCSGC 6 cut(s) 725, 728, 734, 737, 770, 1034
TfiI GAWTC 1 cut(s) 922
Tru1I TTAA 5 cut(s) 152, 317, 399, 513, 804
Tru9I TTAA 5 cut(s) 152, 317, 399, 513, 804
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 1 cut(s) 669
TseI GCWGC 5 cut(s) 482, 550, 728, 737, 915
Tsp45I GTSAC 1 cut(s) 669
TspDTI ATGAA 3 cut(s) 303, 378, 935
TspRI CASTG 1 cut(s) 943
Van91I CCANNNNNTGG 1 cut(s) 226
Vha464I CTTAAG 1 cut(s) 151
VpaK11BI GGWCC 3 cut(s) 173, 653, 662
XapI RAATTY 2 cut(s) 690, 928
XhoI CTCGAG 1 cut(s) 867
XspI CTAG 4 cut(s) 138, 657, 755, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.