AT4G26415

gibberellic acid methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017552
Physical Location & Seq
Reverse (-)
13349044 .. 13350682
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26415.1

Sequence Viewer

Length: 864 bp
ATGAAAGATCTTTCTTTCTTCTTCCTCAAAAAATACTCCCTCGCCTCGAGAATGCGAGGACGAGGTCCACGTAGCGGCTTTGCTAGCTCTTGTGGTGGTGATGGCTCAACTTTGACACTAAACCAACATCAAAAGAACGATGTGGGGCCTTCTGTTACACCTGAAAACACTCCTTTCGGTGGAGGATCTCCGAGAACTCTAGAGGAGATGATACTTCAGCTAGAGGTTGAAGAAGATATTGTTCGAAGAGCGAGACTCCGTGAATCTTACTACGGTACTTACGATAATTGTGATGACCATAATGATGTTGATGATGATAAGTTATATCATCAGCCCGCCCGGATGTCATGCGTTAACAGTTCCGATATTTTGAGGTCAGCAAGGAACGCGTTGAATCAGTACCCACGTTTCTCACTGGACGGTAAGGACGCTATGTACCGGTCATCCTTCCGGCGCCATCTTGGCACCAGTGCTGACATGACGATACAGGGTGGGCGGAGATCCCACTGCGGGGATCAACGGACATCAAAGAGATCGAGCCAGATGAGCTTGGAGACAAAACGCCTGCCACGGACAGTGGCCGGAGAGAGTGTGGTATGGTGCAAGACGGGGGTTGTTGCAAAGCTGATGGGTCTGGAGATGATACCTGTTCCGGACAAGGGAAAATCGGGAAAAGATAAGTTAGGGACTCTGCTCAAGAGGGAGCGTCTAAGGAGGAGAGAACGGACTCTGGACGTTAATGGTCGGACCGGTCCGACGACTGAAGCTTCTTGCTCGTCTGGAGGGTTTAACATTACTAGACCAATCGGAGCAGTTGGGTCGCCTAGTCGCATGGGTGGATGGCCCACAGCCCGTCTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0010340 GO:0010341 GO:0016740 GO:0016741 GO:0032259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

287

Amino Acids

31.8

Weight (kDa)

9.81

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 453, 464
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 4 cut(s) 75, 336, 496, 510
AclWI GGATC 3 cut(s) 193, 495, 522
AcoI YGGCCR 1 cut(s) 579
AcuI CTGAAG 2 cut(s) 200, 783
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 3 cut(s) 277, 401, 437
AfiI CCNNNNNNNGG 5 cut(s) 74, 179, 510, 511, 659
AflIII ACRYGT 1 cut(s) 387
AgeI ACCGGT 2 cut(s) 438, 749
AgsI TTSAA 2 cut(s) 230, 394
AluBI AGCT 5 cut(s) 87, 220, 549, 625, 767
AluI AGCT 5 cut(s) 87, 220, 549, 625, 767
Alw26I GTCTC 3 cut(s) 247, 548, 860
AlwI GGATC 3 cut(s) 193, 495, 522
Ama87I CYCGRG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 3 cut(s) 146, 579, 842
AsiGI ACCGGT 2 cut(s) 438, 749
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 5 cut(s) 65, 146, 747, 752, 843
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 244
AsuNHI GCTAGC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 3 cut(s) 65, 747, 752
BanI GGYRCC 2 cut(s) 453, 464
BccI CCATC 4 cut(s) 95, 465, 622, 834
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 247, 548, 860
BfaI CTAG 5 cut(s) 84, 200, 221, 798, 825
BfoI RGCGCY 1 cut(s) 457
BglI GCCNNNNNGGC 1 cut(s) 462
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 3 cut(s) 65, 747, 752
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 5 cut(s) 65, 146, 747, 752, 843
BmiI GGNNCC 3 cut(s) 147, 455, 466
BmrFI CCNGG 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 2 cut(s) 656, 801
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 340
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 569
BsaWI WCCGGW 3 cut(s) 438, 652, 749
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 179, 510, 511, 659
Bse118I RCCGGY 2 cut(s) 438, 749
Bse1I ACTGG 2 cut(s) 420, 468
BseAI TCCGGA 1 cut(s) 652
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 3 cut(s) 348, 443, 845
BseLI CCNNNNNNNGG 5 cut(s) 74, 179, 510, 511, 659
BseNI ACTGG 2 cut(s) 420, 468
BseRI GAGGAG 2 cut(s) 218, 730
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 148, 581, 844
BshNI GGYRCC 2 cut(s) 453, 464
BshTI ACCGGT 2 cut(s) 438, 749
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 6 cut(s) 340, 439, 451, 582, 653, 750
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 5 cut(s) 74, 179, 510, 511, 659
BsmAI GTCTC 3 cut(s) 247, 548, 860
BsmBI CGTCTC 1 cut(s) 860
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 3 cut(s) 148, 581, 844
BsoBI CYCGRG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 7, 185, 500, 514, 533
BspACI CCGC 4 cut(s) 75, 336, 496, 510
BspANI GGCC 3 cut(s) 148, 581, 844
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 3 cut(s) 147, 455, 466
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 3 cut(s) 193, 495, 522
BspQI GCTCTTC 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 244
BspT107I GGYRCC 2 cut(s) 453, 464
BsrFI RCCGGY 2 cut(s) 438, 749
BsrI ACTGG 2 cut(s) 420, 468
BssAI RCCGGY 2 cut(s) 438, 749
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 5 cut(s) 7, 185, 500, 514, 533
BssNI GRCGYC 1 cut(s) 454
Bst4CI ACNGT 4 cut(s) 275, 359, 422, 577
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 244
BstC8I GCNNGC 3 cut(s) 85, 336, 566
BstDEI CTNAG 1 cut(s) 710
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 3 cut(s) 348, 443, 845
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 5 cut(s) 10, 188, 503, 517, 536
BstMAI GTCTC 3 cut(s) 247, 548, 860
BstMBI GATC 5 cut(s) 7, 185, 500, 514, 533
BstMWI GCNNNNNNNGC 4 cut(s) 84, 386, 462, 546
BstSCI CCNGG 1 cut(s) 338
BstUI CGCG 1 cut(s) 389
BstX2I RGATCY 3 cut(s) 7, 185, 500
BstYI RGATCY 3 cut(s) 7, 185, 500
BsuRI GGCC 3 cut(s) 148, 581, 844
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 3 cut(s) 348, 443, 845
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 4 cut(s) 413, 475, 505, 582
Cac8I GCNNGC 3 cut(s) 85, 336, 566
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 2 cut(s) 438, 749
Cfr13I GGNCC 5 cut(s) 65, 146, 747, 752, 843
CpoI CGGWCCG 2 cut(s) 747, 752
CseI GACGC 2 cut(s) 437, 695
Csp6I GTAC 3 cut(s) 276, 400, 436
CspAI ACCGGT 2 cut(s) 438, 749
CspI CGGWCCG 2 cut(s) 747, 752
CviAII CATG 3 cut(s) 348, 478, 832
CviQI GTAC 3 cut(s) 276, 400, 436
DdeI CTNAG 1 cut(s) 710
DinI GGCGCC 1 cut(s) 455
DpnI GATC 5 cut(s) 9, 187, 502, 516, 535
DpnII GATC 5 cut(s) 7, 185, 500, 514, 533
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 511
Eco47I GGWCC 3 cut(s) 65, 747, 752
Eco57I CTGAAG 2 cut(s) 200, 783
Eco88I CYCGRG 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 146
EgeI GGCGCC 1 cut(s) 455
EheI GGCGCC 1 cut(s) 455
Esp3I CGTCTC 1 cut(s) 860
FaeI CATG 3 cut(s) 351, 481, 835
FaiI YATR 8 cut(s) 300, 325, 349, 434, 479, 598, 833, 862
FaqI GGGAC 1 cut(s) 700
FatI CATG 3 cut(s) 347, 477, 831
FauI CCCGC 2 cut(s) 343, 503
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 3 cut(s) 355, 430, 852
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 5 cut(s) 84, 200, 221, 798, 825
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 76
GsuI CTGGAG 2 cut(s) 656, 801
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 3 cut(s) 148, 581, 844
HapII CCGG 6 cut(s) 340, 439, 451, 582, 653, 750
HgaI GACGC 2 cut(s) 437, 695
HhaI GCGC 1 cut(s) 456
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 3 cut(s) 351, 481, 835
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 5 cut(s) 255, 263, 394, 688, 727
HpaI GTTAAC 1 cut(s) 355
HpaII CCGG 6 cut(s) 340, 439, 451, 582, 653, 750
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 68, 355
Hpy188I TCNGA 5 cut(s) 192, 364, 747, 756, 809
Hpy188III TCNNGA 8 cut(s) 48, 200, 635, 653, 669, 697, 731, 780
Hpy8I GTNNAC 2 cut(s) 68, 355
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 2 cut(s) 159, 457
HpyCH4III ACNGT 4 cut(s) 275, 359, 422, 577
HpyCH4IV ACGT 3 cut(s) 70, 406, 735
HpyCH4V TGCA 2 cut(s) 603, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 386, 462, 546
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 3 cut(s) 70, 406, 735
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 3 cut(s) 351, 481, 835
HspAI GCGC 1 cut(s) 454
KasI GGCGCC 1 cut(s) 453
Kpn2I TCCGGA 1 cut(s) 652
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 5 cut(s) 7, 185, 500, 514, 533
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 703, 809
MaeI CTAG 5 cut(s) 84, 200, 221, 798, 825
MaeII ACGT 3 cut(s) 70, 406, 735
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 9, 187, 502, 516, 535
MboI GATC 5 cut(s) 7, 185, 500, 514, 533
MboII GAAGA 5 cut(s) 10, 13, 242, 245, 258
MflI RGATCY 3 cut(s) 7, 185, 500
MluCI AATT 1 cut(s) 286
MluI ACGCGT 1 cut(s) 387
Mly113I GGCGCC 1 cut(s) 454
MlyI GAGTC 3 cut(s) 249, 682, 721
MmeI TCCRAC 2 cut(s) 725, 779
MroI TCCGGA 1 cut(s) 652
MseI TTAA 3 cut(s) 354, 738, 789
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 6 cut(s) 340, 439, 451, 582, 653, 750
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 57
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 84, 386, 462, 546
NarI GGCGCC 1 cut(s) 454
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 7, 185, 500, 514, 533
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 3 cut(s) 351, 481, 835
NlaIV GGNNCC 3 cut(s) 147, 455, 466
NspV TTCGAA 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 279
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 263, 394
PflFI GACNNNGTC 1 cut(s) 63
PinAI ACCGGT 2 cut(s) 438, 749
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 3 cut(s) 249, 682, 721
PluTI GGCGCC 1 cut(s) 457
PpsI GAGTC 3 cut(s) 249, 682, 721
Ppu21I YACGTR 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 147, 455, 466
PspPI GGNCC 5 cut(s) 65, 146, 747, 752, 843
PsuI RGATCY 3 cut(s) 7, 185, 500
PsyI GACNNNGTC 1 cut(s) 63
RsaI GTAC 3 cut(s) 277, 401, 437
RsaNI GTAC 3 cut(s) 276, 400, 436
RseI CAYNNNNRTG 1 cut(s) 303
Rsr2I CGGWCCG 2 cut(s) 747, 752
RsrII CGGWCCG 2 cut(s) 747, 752
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 354, 738, 789
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 5 cut(s) 7, 185, 500, 514, 533
Sau96I GGNCC 5 cut(s) 65, 146, 747, 752, 843
SchI GAGTC 3 cut(s) 249, 682, 721
ScrFI CCNGG 1 cut(s) 340
SfoI GGCGCC 1 cut(s) 455
Sfr274I CTCGAG 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 244
SinI GGWCC 3 cut(s) 65, 747, 752
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 46, 695
SmoI CTYRAG 2 cut(s) 46, 695
Sse9I AATT 1 cut(s) 286
SsiI CCGC 4 cut(s) 75, 336, 496, 510
SspDI GGCGCC 1 cut(s) 453
SspMI CTAG 5 cut(s) 84, 200, 221, 798, 825
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 4 cut(s) 275, 359, 422, 577
TaiI ACGT 3 cut(s) 73, 409, 738
TaqI TCGA 3 cut(s) 47, 244, 536
TasI AATT 1 cut(s) 286
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 263, 394
Tru1I TTAA 3 cut(s) 354, 738, 789
Tru9I TTAA 3 cut(s) 354, 738, 789
TscAI CASTG 4 cut(s) 420, 475, 512, 582
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 248, 535, 586, 739
TspRI CASTG 4 cut(s) 420, 475, 512, 582
Tth111I GACNNNGTC 1 cut(s) 63
VpaK11BI GGWCC 3 cut(s) 65, 747, 752
XbaI TCTAGA 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 5 cut(s) 84, 200, 221, 798, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.