Rh5BG567200

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017552
Physical Location & Seq
Reverse (-)
89687777 .. 89689406
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG567200.1

Sequence Viewer

Length: 834 bp
ATGGAAAGGCAGCCAACGTTGGAGGAGATGATATTGAAGTTGGATTTGGAAGAGGAGATTGCAAGAAAATCAAAGGCGCTGCAGCTCATGAAAGAGGGCCAAGAAGACGATGACTACAATGTTGATATGAATGGACTAATAATGCGAGGACCGGGTAGGATGTCTTGCGTAAATAATTCAGATATTTTGCGGTCTGCAAGGAATGCATTGAATCAGTACCCTCGTTTCTCTCTTGATGGCAGGGATGCCATGTACCGCTCTTCCTTCAGAAACAACTTACATTTGAAGCAGGATCATATTGGTATTGTAGGACAGGAAAAGCTGAGGCCAACTCATCGTGATCACAGAAGAAGCTCAGATGTATGCTCATCAATGGGCCGTGATGCAAGCAGCAGTACCACGAGGTCTTTGTATCGTCGTCGTTTGCCAGCAACTTTAGCAGGGGAGAGTGTCGTATGGTGCAAACCAGGTGTAGTAGCCAAACTGATGGGGCTAGACGCCATGCCAGTACCAGTAAGTGTTAGTGGCAAATTCAAAGGTAGTAGTAATGAAAAGTTGTGTTACATCTTGAAGCAGAGTCAACGAAACATGATCACTATGAGGAGCAAAGGTGAGCAGAGACATGAAATGGAGAAAAGATCAATGATGCACGCTATGGATCGTAGTATTCCTGTAGCACGTAATTGTAGCAGATTTAATAATTGTAAGAAAGGCAAGGCTGCTGCTGCTGCTACTACTACCGGTTCCTGCAGTACCACATCCAAAACTACTCCAGCTGGGAATTACTGTGTTGTTAAGCCATTAGTCACCATACAGCATTCAGATAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

277

Amino Acids

31.05

Weight (kDa)

9.69

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 152 - 169 6.2e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 258
AciI CCGC 2 cut(s) 190, 256
AclI AACGTT 1 cut(s) 17
AclWI GGATC 2 cut(s) 300, 666
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 5 cut(s) 218, 254, 397, 510, 754
AgeI ACCGGT 1 cut(s) 740
AgsI TTSAA 5 cut(s) 37, 211, 286, 535, 571
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 85, 322, 354, 776
AluI AGCT 4 cut(s) 85, 322, 354, 776
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 2 cut(s) 300, 666
AoxI GGCC 3 cut(s) 97, 326, 376
ApeKI GCWGC 8 cut(s) 10, 79, 82, 390, 719, 722, 725, 728
ApoI RAATTY 1 cut(s) 530
AsiGI ACCGGT 1 cut(s) 740
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 3 cut(s) 97, 149, 376
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 623, 799
AvaII GGWCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 8 cut(s) 22, 66, 94, 402, 706, 709, 712, 715
BccI CCATC 2 cut(s) 230, 481
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 468
BclI TGATCA 2 cut(s) 340, 591
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 494, 832
BfmI CTRYAG 3 cut(s) 80, 672, 748
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 8 cut(s) 11, 80, 83, 391, 720, 723, 726, 729
BlsI GCNGC 8 cut(s) 12, 81, 84, 392, 721, 724, 727, 730
Bme1390I CCNGG 2 cut(s) 153, 468
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 3 cut(s) 97, 149, 376
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 2 cut(s) 153, 468
BmsI GCATC 3 cut(s) 235, 373, 636
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 740
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bse118I RCCGGY 1 cut(s) 740
Bse1I ACTGG 2 cut(s) 506, 512
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 165, 250, 758
BseMII CTCAG 2 cut(s) 314, 369
BseNI ACTGG 2 cut(s) 506, 512
BseRI GAGGAG 3 cut(s) 38, 68, 616
BseXI GCAGC 8 cut(s) 22, 66, 94, 402, 706, 709, 712, 715
BseYI CCCAGC 1 cut(s) 776
BshFI GGCC 3 cut(s) 99, 328, 378
BshTI ACCGGT 1 cut(s) 740
BsiSI CCGG 2 cut(s) 152, 741
BsmAI GTCTC 1 cut(s) 613
BsmI GAATGC 2 cut(s) 208, 817
BsnI GGCC 3 cut(s) 99, 328, 378
Bsp143I GATC 5 cut(s) 292, 340, 591, 638, 658
BspACI CCGC 2 cut(s) 190, 256
BspANI GGCC 3 cut(s) 99, 328, 378
BspCNI CTCAG 2 cut(s) 315, 368
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 745
BspMAI CTGCAG 2 cut(s) 84, 752
BspPI GGATC 2 cut(s) 300, 666
BspQI GCTCTTC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 740
BsrI ACTGG 2 cut(s) 506, 512
BssAI RCCGGY 1 cut(s) 740
BssMI GATC 5 cut(s) 292, 340, 591, 638, 658
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 788
Bst6I CTCTTC 2 cut(s) 45, 265
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 388, 429, 651
BstDEI CTNAG 2 cut(s) 323, 355
BstF5I GGATG 3 cut(s) 165, 250, 758
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 5 cut(s) 295, 343, 594, 641, 661
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 5 cut(s) 292, 340, 591, 638, 658
BstMWI GCNNNNNNNGC 4 cut(s) 203, 437, 725, 728
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 151, 466
BstSFI CTRYAG 3 cut(s) 80, 672, 748
BstV1I GCAGC 8 cut(s) 22, 66, 94, 402, 706, 709, 712, 715
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 3 cut(s) 99, 328, 378
BtsCI GGATG 3 cut(s) 165, 250, 758
Cac8I GCNNGC 3 cut(s) 388, 429, 651
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 3 cut(s) 97, 149, 376
CseI GACGC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 5 cut(s) 217, 253, 396, 509, 753
CspAI ACCGGT 1 cut(s) 740
CviAII CATG 5 cut(s) 88, 250, 502, 589, 623
CviQI GTAC 5 cut(s) 217, 253, 396, 509, 753
DdeI CTNAG 2 cut(s) 323, 355
DpnI GATC 5 cut(s) 294, 342, 593, 640, 660
DpnII GATC 5 cut(s) 292, 340, 591, 638, 658
Eam1104I CTCTTC 2 cut(s) 45, 265
EarI CTCTTC 2 cut(s) 45, 265
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 208
FaeI CATG 5 cut(s) 91, 253, 505, 592, 626
FatI CATG 5 cut(s) 87, 249, 501, 588, 622
FbaI TGATCA 2 cut(s) 340, 591
Fnu4HI GCNGC 8 cut(s) 11, 80, 83, 391, 720, 723, 726, 729
FokI GGATG 3 cut(s) 172, 257, 745
Fsp4HI GCNGC 8 cut(s) 11, 80, 83, 391, 720, 723, 726, 729
FspBI CTAG 2 cut(s) 494, 832
GlaI GCGC 1 cut(s) 78
GluI GCNGC 8 cut(s) 11, 80, 83, 391, 720, 723, 726, 729
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 3 cut(s) 99, 328, 378
HapII CCGG 2 cut(s) 152, 741
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 5 cut(s) 91, 253, 505, 592, 626
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 2 cut(s) 211, 577
HpaII CCGG 2 cut(s) 152, 741
HphI GGTGA 2 cut(s) 623, 799
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 4 cut(s) 181, 269, 358, 823
Hpy188III TCNNGA 4 cut(s) 88, 233, 338, 568
Hpy8I GTNNAC 1 cut(s) 581
Hpy99I CGWCG 2 cut(s) 420, 423
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 788
HpyCH4IV ACGT 2 cut(s) 17, 679
HpyCH4V TGCA 8 cut(s) 62, 82, 197, 206, 386, 462, 649, 750
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 437, 725, 728
HpyF3I CTNAG 2 cut(s) 323, 355
HpySE526I ACGT 2 cut(s) 17, 679
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 5 cut(s) 91, 253, 505, 592, 626
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 2 cut(s) 340, 591
Kzo9I GATC 5 cut(s) 292, 340, 591, 638, 658
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 8 cut(s) 22, 66, 94, 402, 706, 709, 712, 715
LweI GCATC 3 cut(s) 235, 373, 636
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 2 cut(s) 494, 832
MaeII ACGT 2 cut(s) 17, 679
MaeIII GTNAC 2 cut(s) 560, 805
MalI GATC 5 cut(s) 294, 342, 593, 640, 660
MbiI CCGCTC 1 cut(s) 258
MboI GATC 5 cut(s) 292, 340, 591, 638, 658
MboII GAAGA 4 cut(s) 62, 116, 252, 360
MluCI AATT 5 cut(s) 175, 530, 682, 700, 781
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 8 cut(s) 16, 46, 88, 140, 231, 318, 396, 594
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 2 cut(s) 696, 795
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 2 cut(s) 152, 741
MspR9I CCNGG 2 cut(s) 153, 468
Mva1269I GAATGC 2 cut(s) 208, 817
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 4 cut(s) 203, 437, 725, 728
NciI CCSGG 1 cut(s) 153
NdeII GATC 5 cut(s) 292, 340, 591, 638, 658
NlaIII CATG 5 cut(s) 91, 253, 505, 592, 626
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 1 cut(s) 805
NsiI ATGCAT 1 cut(s) 208
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 265
PctI GAATGC 2 cut(s) 208, 817
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 740
PkrI GCNGC 8 cut(s) 12, 81, 84, 392, 721, 724, 727, 730
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 745
PspPI GGNCC 3 cut(s) 97, 149, 376
PstI CTGCAG 2 cut(s) 84, 752
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 5 cut(s) 218, 254, 397, 510, 754
RsaNI GTAC 5 cut(s) 217, 253, 396, 509, 753
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 696, 795
SatI GCNGC 8 cut(s) 11, 80, 83, 391, 720, 723, 726, 729
Sau3AI GATC 5 cut(s) 292, 340, 591, 638, 658
Sau96I GGNCC 3 cut(s) 97, 149, 376
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 153, 468
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 3 cut(s) 235, 373, 636
SfcI CTRYAG 3 cut(s) 80, 672, 748
SinI GGWCC 1 cut(s) 149
Sse9I AATT 5 cut(s) 175, 530, 682, 700, 781
SsiI CCGC 2 cut(s) 190, 256
SspMI CTAG 2 cut(s) 494, 832
StyD4I CCNGG 2 cut(s) 151, 466
TaaI ACNGT 1 cut(s) 788
TaiI ACGT 2 cut(s) 20, 682
TasI AATT 5 cut(s) 175, 530, 682, 700, 781
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 696, 795
Tru9I TTAA 2 cut(s) 696, 795
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 8 cut(s) 10, 79, 82, 390, 719, 722, 725, 728
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 4 cut(s) 104, 143, 564, 639
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 530
XspI CTAG 2 cut(s) 494, 832
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.