Rh5CG589000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017552
Physical Location & Seq
Reverse (-)
83409008 .. 83410637
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG589000.1

Sequence Viewer

Length: 1101 bp
ATGAGAGACGTGTCCTTATTTCTCCTGAAGAACTCTCTGGGATCGAAGATGAAGAAAGGCTTGAGAAACTTCTGCAACGACGATGGCTCAACCTCTACCCTCAACCAACATGGCAGTAGCCGCCCCAGCCCCCTTGGTCTTGCTCTTAGTCAACATGATCATGATCATACCTCCCCAGTAGGTCCTGTCAAAGTCGACTCTGGCTTTAATAAACATTGGCAAAATGCTGCTGCTAATACTGATGATCATCAATATCGTCTTCAGGAAATGGAAAGGCAGCCAACGTTGGAGGAGATGATATTGAAGTTGGATTTGGAAGAGGAGATTGCAAGAAAATCAAAGGCGCTGCAGCTCATGAAAGAGGGCCAAGAAGACGATGACTACAATGTTGATATGAATGGACTAATAATGCGAGGACCGGGTAGGATGTCTTGCGTAAATAATTCAGATATTTTGCGGTCTGCAAGGAATGCATTGAATCAGTACCCTCGTTTCTCTCTTGATGGCAGGGATGCCATGTACCGCTCTTCCTTCAGAAACAACTTACATTTGAAGCAGGATCATATTGGTATTGTAGGACAGGAAAAGCTGAGGCCAACTCATCGTGATCACAGAAGAAGCTCAGATGTATGCTCATCAATGGGCCGTGATGCAAGCAGCAGTACCACGAGGTCTTTGTATCGTCGTCGTTTGCCAGCAACTTTAGCAGGGGAGAGTGTCGTATGGTGCAAACCAGGTGTAGTAGCCAAACTGATGGGGCTAGACGCCATGCCAGTACCAGTAAGTGTTAGTGGCAAATTCAAAGGTAGTAGTAATGAAAAGTTGTGTTACATCTTGAAGCAGAGTCAACGAAACATGATCACTATGAGGAGCAAAGGTGAGCAGAGACATGAAATGGAGAAAAGATCAATGATGCACGCTATGGATCGTAGTATTCCTGTAGCACGTAATTGTAGCAGATTTAATAATTGTAAGAAAGGCAAGGCTGCTGCTGCTGCTACTACTACCGGTTCCTGCAGTACCACATCCAAAACTACTCCAGCTGGGAATTACTGTGTTGTTAAGCCATTAGTCACCATACAGCATTCAGATAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

366

Amino Acids

40.87

Weight (kDa)

9.58

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 242 - 258 8.8e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 195
AciI CCGC 3 cut(s) 121, 457, 523
AclI AACGTT 1 cut(s) 284
AclWI GGATC 3 cut(s) 49, 567, 933
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 3 cut(s) 47, 245, 517
AcyI GRCGYC 1 cut(s) 765
AfaI GTAC 5 cut(s) 485, 521, 664, 777, 1021
AflIII ACRYGT 1 cut(s) 9
AgeI ACCGGT 1 cut(s) 1007
AgsI TTSAA 5 cut(s) 304, 478, 553, 802, 838
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 733
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 352, 589, 621, 1043
AluI AGCT 4 cut(s) 352, 589, 621, 1043
Alw26I GTCTC 1 cut(s) 880
AlwI GGATC 3 cut(s) 49, 567, 933
AoxI GGCC 3 cut(s) 364, 593, 643
ApoI RAATTY 1 cut(s) 797
AsiGI ACCGGT 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 4 cut(s) 182, 364, 416, 643
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 890, 1066
AvaII GGWCC 2 cut(s) 182, 416
BauI CACGAG 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 251, 378
BbvCI CCTCAGC 1 cut(s) 590
BccI CCATC 3 cut(s) 77, 497, 748
BceAI ACGGC 1 cut(s) 630
BciT130I CCWGG 1 cut(s) 735
BclI TGATCA 5 cut(s) 157, 163, 244, 607, 858
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 2 cut(s) 761, 1099
BfmI CTRYAG 3 cut(s) 347, 939, 1015
BfoI RGCGCY 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 420, 735
Bme18I GGWCC 2 cut(s) 182, 416
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 4 cut(s) 182, 364, 416, 643
BmiI GGNNCC 1 cut(s) 1012
BmrFI CCNGG 2 cut(s) 420, 735
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 3 cut(s) 502, 640, 903
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 251, 378
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 1 cut(s) 1023
Bpu10I CCTNAGC 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 947
BsaBI GATNNNNATC 2 cut(s) 162, 246
BsaHI GRCGYC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 1007
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 3 cut(s) 176, 773, 779
Bse8I GATNNNNATC 2 cut(s) 162, 246
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 3 cut(s) 432, 517, 1025
BseJI GATNNNNATC 2 cut(s) 162, 246
BseMII CTCAG 2 cut(s) 581, 636
BseNI ACTGG 3 cut(s) 176, 773, 779
BseRI GAGGAG 3 cut(s) 305, 335, 883
BseYI CCCAGC 2 cut(s) 125, 1043
BshFI GGCC 3 cut(s) 366, 595, 645
BshTI ACCGGT 1 cut(s) 1007
BsiSI CCGG 2 cut(s) 419, 1008
BsmAI GTCTC 1 cut(s) 880
BsmI GAATGC 2 cut(s) 475, 1084
BsnI GGCC 3 cut(s) 366, 595, 645
Bsp143I GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
BspACI CCGC 3 cut(s) 121, 457, 523
BspANI GGCC 3 cut(s) 366, 595, 645
BspCNI CTCAG 2 cut(s) 582, 635
BspHI TCATGA 2 cut(s) 160, 354
BspLI GGNNCC 1 cut(s) 1012
BspMAI CTGCAG 2 cut(s) 351, 1019
BspPI GGATC 3 cut(s) 49, 567, 933
BspQI GCTCTTC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 1007
BsrI ACTGG 3 cut(s) 176, 773, 779
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
BssNI GRCGYC 1 cut(s) 765
BssSI CACGAG 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 667
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 1055
Bst6I CTCTTC 2 cut(s) 312, 532
BstACI GRCGYC 1 cut(s) 765
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 655, 696, 918
BstDEI CTNAG 3 cut(s) 146, 590, 622
BstF5I GGATG 3 cut(s) 432, 517, 1025
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 9 cut(s) 44, 160, 166, 247, 562, 610, 861, 908, 928
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
BstMWI GCNNNNNNNGC 6 cut(s) 120, 126, 470, 704, 992, 995
BstNI CCWGG 1 cut(s) 735
BstSCI CCNGG 2 cut(s) 418, 733
BstSFI CTRYAG 3 cut(s) 347, 939, 1015
BstV2I GAAGAC 2 cut(s) 251, 378
BstXI CCANNNNNNTGG 1 cut(s) 754
BsuRI GGCC 3 cut(s) 366, 595, 645
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 432, 517, 1025
Cac8I GCNNGC 3 cut(s) 655, 696, 918
CciI TCATGA 2 cut(s) 160, 354
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 4 cut(s) 182, 364, 416, 643
CseI GACGC 1 cut(s) 773
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 5 cut(s) 484, 520, 663, 776, 1020
CspAI ACCGGT 1 cut(s) 1007
CviAII CATG 8 cut(s) 110, 155, 161, 355, 517, 769, 856, 890
CviQI GTAC 5 cut(s) 484, 520, 663, 776, 1020
DdeI CTNAG 3 cut(s) 146, 590, 622
DpnI GATC 9 cut(s) 43, 159, 165, 246, 561, 609, 860, 907, 927
DpnII GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
Eam1104I CTCTTC 2 cut(s) 312, 532
EarI CTCTTC 2 cut(s) 312, 532
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 182, 416
Eco57I CTGAAG 3 cut(s) 47, 245, 517
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 8 cut(s) 113, 158, 164, 358, 520, 772, 859, 893
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 8 cut(s) 109, 154, 160, 354, 516, 768, 855, 889
FbaI TGATCA 5 cut(s) 157, 163, 244, 607, 858
FblI GTMKAC 1 cut(s) 195
FokI GGATG 3 cut(s) 439, 524, 1012
FspBI CTAG 2 cut(s) 761, 1099
GlaI GCGC 1 cut(s) 345
GsaI CCCAGC 2 cut(s) 129, 1047
GsuI CTGGAG 1 cut(s) 1023
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 3 cut(s) 366, 595, 645
HapII CCGG 2 cut(s) 419, 1008
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 765
Hin1II CATG 8 cut(s) 113, 158, 164, 358, 520, 772, 859, 893
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 3 cut(s) 152, 196, 848
HindII GTYRAC 3 cut(s) 152, 196, 848
HinfI GANTC 3 cut(s) 197, 478, 844
HpaII CCGG 2 cut(s) 419, 1008
HphI GGTGA 2 cut(s) 890, 1066
Hpy166II GTNNAC 3 cut(s) 152, 196, 848
Hpy188I TCNGA 4 cut(s) 448, 536, 625, 1090
Hpy188III TCNNGA 7 cut(s) 25, 161, 263, 355, 500, 605, 835
Hpy8I GTNNAC 3 cut(s) 152, 196, 848
Hpy99I CGWCG 3 cut(s) 83, 687, 690
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 1 cut(s) 1055
HpyCH4IV ACGT 3 cut(s) 9, 284, 946
HpyCH4V TGCA 9 cut(s) 75, 329, 349, 464, 473, 653, 729, 916, 1017
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 126, 470, 704, 992, 995
HpyF3I CTNAG 3 cut(s) 146, 590, 622
HpySE526I ACGT 3 cut(s) 9, 284, 946
Hsp92I GRCGYC 1 cut(s) 765
Hsp92II CATG 8 cut(s) 113, 158, 164, 358, 520, 772, 859, 893
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 5 cut(s) 157, 163, 244, 607, 858
Kzo9I GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 870
LweI GCATC 3 cut(s) 502, 640, 903
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 2 cut(s) 761, 1099
MaeII ACGT 3 cut(s) 9, 284, 946
MaeIII GTNAC 2 cut(s) 827, 1072
MalI GATC 9 cut(s) 43, 159, 165, 246, 561, 609, 860, 907, 927
MbiI CCGCTC 1 cut(s) 525
MboI GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
MboII GAAGA 8 cut(s) 40, 58, 64, 251, 329, 383, 519, 627
MluCI AATT 5 cut(s) 442, 797, 949, 967, 1048
MlyI GAGTC 2 cut(s) 191, 853
MmeI TCCRAC 2 cut(s) 267, 288
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 3 cut(s) 207, 963, 1062
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 1043
MspI CCGG 2 cut(s) 419, 1008
MspR9I CCNGG 2 cut(s) 420, 735
Mva1269I GAATGC 2 cut(s) 475, 1084
MvaI CCWGG 1 cut(s) 735
MwoI GCNNNNNNNGC 6 cut(s) 120, 126, 470, 704, 992, 995
NciI CCSGG 1 cut(s) 420
NdeII GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
NlaIII CATG 8 cut(s) 113, 158, 164, 358, 520, 772, 859, 893
NlaIV GGNNCC 1 cut(s) 1012
NmuCI GTSAC 1 cut(s) 1072
NsiI ATGCAT 1 cut(s) 475
PagI TCATGA 2 cut(s) 160, 354
PciSI GCTCTTC 1 cut(s) 532
PctI GAATGC 2 cut(s) 475, 1084
PfeI GAWTC 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 1007
PleI GAGTC 2 cut(s) 191, 852
PpsI GAGTC 2 cut(s) 191, 852
Ppu21I YACGTR 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 733
PspFI CCCAGC 2 cut(s) 125, 1043
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 1 cut(s) 1012
PspPI GGNCC 4 cut(s) 182, 364, 416, 643
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 2 cut(s) 351, 1019
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 5 cut(s) 485, 521, 664, 777, 1021
RsaNI GTAC 5 cut(s) 484, 520, 663, 776, 1020
RseI CAYNNNNRTG 1 cut(s) 159
SalI GTCGAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 207, 963, 1062
Sau3AI GATC 9 cut(s) 41, 157, 163, 244, 559, 607, 858, 905, 925
Sau96I GGNCC 4 cut(s) 182, 364, 416, 643
SchI GAGTC 2 cut(s) 191, 853
ScrFI CCNGG 2 cut(s) 420, 735
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 3 cut(s) 502, 640, 903
SfcI CTRYAG 3 cut(s) 347, 939, 1015
SinI GGWCC 2 cut(s) 182, 416
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 5 cut(s) 442, 797, 949, 967, 1048
SsiI CCGC 3 cut(s) 121, 457, 523
SspMI CTAG 2 cut(s) 761, 1099
StyD4I CCNGG 2 cut(s) 418, 733
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 1055
TaiI ACGT 3 cut(s) 12, 287, 949
TaqI TCGA 2 cut(s) 44, 195
TasI AATT 5 cut(s) 442, 797, 949, 967, 1048
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 3 cut(s) 207, 963, 1062
Tru9I TTAA 3 cut(s) 207, 963, 1062
TseFI GTSAC 1 cut(s) 1072
Tsp45I GTSAC 1 cut(s) 1072
TspDTI ATGAA 5 cut(s) 65, 371, 410, 831, 906
VpaK11BI GGWCC 2 cut(s) 182, 416
XapI RAATTY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 2 cut(s) 761, 1099
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.