Prupe.6G001000_v2.0.a1

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017552
Physical Location & Seq
Forward (+)
186466 .. 187845
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G001000.1

Sequence Viewer

Length: 1002 bp
ATGAGAGACCAGCTGTCCTTGTTTCTGATCAAGAACTCTCTGGGAGCCAAGATGAAGAAAGGGTTGAGAAATTTTTGCAACGACGATGGCTCAACCTCTACCCTCAACCAACATCACAAGATGACCGGCTGCACCGCTGGCCCTGCTGCTGCTGCTGCTCATCATCATCATACTACTTCTACTGCAGCTGATACCTCCTCCACTAACAATATTATTAATCCAGCAGTTCCTGTTGTTCGCTCTCCCACTAATTATGATTATTATTTGCAGCAAAATATTAATCACAATATTGATACTATTGCTTCTTCTAATTATATTAATAATTCAGATCATGATCATAATCATGATCATCATCAGAAAAGCCCGCAGCCGACGTTGGAGGAGATGATATTGCGGTTAGATTTGGAGGAGGAGATAGCGGCAAGATCAAAGTATTCAAAGCTGAAAGACTACAACAAGAACAAGTACTACAAGGGTAGAATGTCTTGCGTCAACAATTCTGATATCTTAAGGTCTGCAAGGAATGCATTAAATCAGTACCCTCGCTTCTCTCTTGATGGCAAGGATGCCATGTACCTCTCCTCCTTCAGAAACAGCTTAGCTGCTGGTGCAGGTGGTGGAAGAAAATCAGACGTATGTTGCAGCAGGCCTAGGAGCGACTGTCGTGGTCGTCTATCAGGGAAAGTAGCATTATATGAGGATGATGATAATGATACAAGTAGTAGTAGTTATAATAAGCCTAGTAGATTGCCTTTGCCAGCCACTTTAGCAGGGGAGAGCGTGGTGTGGTGCAAACCAGGAGTGGTAGCCAAGTTGATGGGGCTAGAGGCCATGCCATTGCCAGTACCTCTACATCATATTGGTGGTGGTAATGGTAATGGTAAAGATCAAAAGCTGGGTATCATCGACGTCATGAACATGAAGAGACGGAATCTCATGATCAGGAAGAGAGCTCAGGAGAGACATGATGAAATGCAGACAAGACTTGTTACTAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

334

Amino Acids

36.96

Weight (kDa)

9.28

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AarI CACCTGC 1 cut(s) 602
AatII GACGTC 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 602
AciI CCGC 4 cut(s) 135, 365, 394, 419
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 571
AcyI GRCGYC 1 cut(s) 909
AfaI GTAC 4 cut(s) 467, 539, 575, 846
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 1 cut(s) 438
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 796
AluBI AGCT 7 cut(s) 13, 188, 442, 597, 602, 895, 953
AluI AGCT 7 cut(s) 13, 188, 442, 597, 602, 895, 953
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 2 cut(s) 919, 955
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 3 cut(s) 139, 647, 828
ApoI RAATTY 1 cut(s) 70
AseI ATTAAT 3 cut(s) 216, 279, 318
AspA2I CCTAGG 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 140
AvrII CCTAGG 1 cut(s) 650
BanII GRGCYC 1 cut(s) 955
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
Bbv12I GWGCWC 1 cut(s) 955
BccI CCATC 3 cut(s) 80, 551, 811
BciT130I CCWGG 1 cut(s) 798
BclI TGATCA 4 cut(s) 27, 334, 346, 939
BcoDI GTCTC 2 cut(s) 919, 955
BfaI CTAG 3 cut(s) 651, 741, 824
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 602
BlnI CCTAGG 1 cut(s) 650
BlpI GCTNAGC 1 cut(s) 598
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 798
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 798
BmsI GCATC 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 598
BsaBI GATNNNNATC 3 cut(s) 333, 339, 351
BsaHI GRCGYC 1 cut(s) 909
BsaJI CCNNGG 1 cut(s) 650
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 646, 676
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 1 cut(s) 836
Bse8I GATNNNNATC 3 cut(s) 333, 339, 351
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 2 cut(s) 571, 706
BseJI GATNNNNATC 3 cut(s) 333, 339, 351
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 5 cut(s) 187, 395, 422, 425, 571
BseYI CCCAGC 1 cut(s) 895
BsgI GTGCAG 2 cut(s) 115, 630
BshFI GGCC 3 cut(s) 141, 649, 830
BsiHKAI GWGCWC 1 cut(s) 955
BsiSI CCGG 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 919, 955
BsmBI CGTCTC 1 cut(s) 919
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 3 cut(s) 141, 649, 830
Bsp1286I GDGCHC 1 cut(s) 955
Bsp143I GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
Bsp1720I GCTNAGC 1 cut(s) 598
BspACI CCGC 4 cut(s) 135, 365, 394, 419
BspANI GGCC 3 cut(s) 141, 649, 830
BspCNI CTCAG 1 cut(s) 967
BspHI TCATGA 4 cut(s) 331, 343, 912, 936
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 602
BspTI CTTAAG 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 836
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 650
BssMI GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
BssNI GRCGYC 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 2 cut(s) 917, 941
BstACI GRCGYC 1 cut(s) 909
BstAFI CTTAAG 1 cut(s) 508
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 4 cut(s) 139, 365, 647, 759
BstDEI CTNAG 2 cut(s) 598, 954
BstF5I GGATG 2 cut(s) 571, 706
BstKTI GATC 7 cut(s) 30, 331, 337, 349, 428, 889, 942
BstMAI GTCTC 2 cut(s) 919, 955
BstMBI GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
BstMWI GCNNNNNNNGC 7 cut(s) 138, 143, 152, 155, 524, 608, 767
BstNI CCWGG 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 817
BsuRI GGCC 3 cut(s) 141, 649, 830
BtsCI GGATG 2 cut(s) 571, 706
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 4 cut(s) 139, 365, 647, 759
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 4 cut(s) 331, 343, 912, 936
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 1 cut(s) 478
Csp6I GTAC 4 cut(s) 466, 538, 574, 845
CviAII CATG 8 cut(s) 332, 344, 571, 832, 913, 919, 937, 965
CviQI GTAC 4 cut(s) 466, 538, 574, 845
DdeI CTNAG 2 cut(s) 598, 954
DpnI GATC 7 cut(s) 29, 330, 336, 348, 427, 888, 941
DpnII GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 917, 941
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 917, 941
Ecl136II GAGCTC 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 650
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 955
Eco32I GATATC 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 953
Eco57I CTGAAG 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 796
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 955
ErhI CCWWGG 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 919
FaeI CATG 8 cut(s) 335, 347, 574, 835, 916, 922, 940, 968
FatI CATG 8 cut(s) 331, 343, 570, 831, 912, 918, 936, 964
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 4 cut(s) 27, 334, 346, 939
FokI GGATG 2 cut(s) 578, 713
FriOI GRGCYC 1 cut(s) 955
FspBI CTAG 3 cut(s) 651, 741, 824
GsaI CCCAGC 1 cut(s) 899
HaeIII GGCC 3 cut(s) 141, 649, 830
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 909
Hin1II CATG 8 cut(s) 335, 347, 574, 835, 916, 922, 940, 968
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 1 cut(s) 931
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 6 cut(s) 27, 328, 357, 502, 590, 631
Hpy188III TCNNGA 8 cut(s) 31, 332, 344, 554, 913, 937, 943, 956
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 3 cut(s) 86, 376, 911
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 3 cut(s) 374, 633, 909
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 143, 152, 155, 524, 608, 767
HpyF3I CTNAG 2 cut(s) 598, 954
HpySE526I ACGT 3 cut(s) 374, 633, 909
Hsp92I GRCGYC 1 cut(s) 909
Hsp92II CATG 8 cut(s) 335, 347, 574, 835, 916, 922, 940, 968
Ksp22I TGATCA 4 cut(s) 27, 334, 346, 939
Kzo9I GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
LmnI GCTCC 2 cut(s) 44, 654
LweI GCATC 1 cut(s) 556
MaeI CTAG 3 cut(s) 651, 741, 824
MaeII ACGT 3 cut(s) 374, 633, 909
MaeIII GTNAC 1 cut(s) 988
MalI GATC 7 cut(s) 29, 330, 336, 348, 427, 888, 941
MboI GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
MboII GAAGA 5 cut(s) 67, 297, 633, 934, 958
MhlI GDGCHC 1 cut(s) 955
MluCI AATT 6 cut(s) 70, 250, 310, 322, 496, 997
MmeI TCCRAC 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 529
MseI TTAA 6 cut(s) 216, 279, 318, 509, 530, 1000
MslI CAYNNNNRTG 3 cut(s) 342, 861, 917
MspA1I CMGCKG 3 cut(s) 13, 137, 188
MspCI CTTAAG 1 cut(s) 508
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 7 cut(s) 138, 143, 152, 155, 524, 608, 767
NdeII GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
NlaIII CATG 8 cut(s) 335, 347, 574, 835, 916, 922, 940, 968
NlaIV GGNNCC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 529
PagI TCATGA 4 cut(s) 331, 343, 912, 936
PaqCI CACCTGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 649
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 931
PshBI ATTAAT 3 cut(s) 216, 279, 318
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 955
Psp6I CCWGG 1 cut(s) 796
PspFI CCCAGC 1 cut(s) 895
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 140
PsrI GAACNNNNNNTAC 2 cut(s) 452, 484
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 13, 188
RsaI GTAC 4 cut(s) 467, 539, 575, 846
RsaNI GTAC 4 cut(s) 466, 538, 574, 845
RseI CAYNNNNRTG 3 cut(s) 342, 861, 917
SacI GAGCTC 1 cut(s) 955
SaqAI TTAA 6 cut(s) 216, 279, 318, 509, 530, 1000
Sau3AI GATC 7 cut(s) 27, 328, 334, 346, 425, 886, 939
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 3 cut(s) 342, 861, 917
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 6 cut(s) 70, 250, 310, 322, 496, 997
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 4 cut(s) 135, 365, 394, 419
SspI AATATT 3 cut(s) 211, 277, 289
SspMI CTAG 3 cut(s) 651, 741, 824
SstI GAGCTC 1 cut(s) 955
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 1 cut(s) 796
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 3 cut(s) 377, 636, 912
TaqI TCGA 1 cut(s) 906
TasI AATT 6 cut(s) 70, 250, 310, 322, 496, 997
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 931
Tru1I TTAA 6 cut(s) 216, 279, 318, 509, 530, 1000
Tru9I TTAA 6 cut(s) 216, 279, 318, 509, 530, 1000
TspDTI ATGAA 4 cut(s) 68, 929, 935, 984
TspGWI ACGGA 1 cut(s) 943
Vha464I CTTAAG 1 cut(s) 508
VspI ATTAAT 3 cut(s) 216, 279, 318
XapI RAATTY 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 650
XspI CTAG 3 cut(s) 651, 741, 824
ZraI GACGTC 1 cut(s) 910
ZrmI AGTACT 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.