RLG00000037081

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017552
Physical Location & Seq
Reverse (-)
88133017 .. 88134066
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037081

Sequence Viewer

Length: 1050 bp
ATGAAGAAAGGCTTGAGAAACTTCTGCAACGACGATGGCTCAACCTCGACCCTCAACCAGCATGGCAGTAGCCGCCCCAGCCCCCCTGGTCTTGCTCTTAGTCAACATGATCATGATCATACCTCCCCAGTAGGTCCTGTCAATGTCGACTCTGGCTTTAATAAACATTGGCAAAATGCTGTTGCTAATACTGATGATCATCAATATCGTCTTCAGGAAATGGAAAGGCAGCCAACGTTGGAGGACATGATATTGAAGTTGGATTTGGAAGAGGAGATTGCAAGAAAATCAAAGGCGCTGCAGCTCATGAAAGAGGGCCATGAAGACGATGACTTCAATGTTGATATGAATGGACTAATAATGCGAGGACCGGGTAGGATGTCTTGCGTAAATAATTCAGATATTTTGCGGTCTGCAAGGAATGCATTGAATCAGTACCCTCGTTTCTCTCTTGATGGCAGGGATGCCATGTACCGCTCTTCCTTCAGAAACAACTTACATTTGAAGCAGGATCATATTGGTATCGTAGGACAGGAAAAGCTGAGGCCAACTCATCGTGATCACAGAAGAAGCTCAGATGTATGCTCATCAATGGGTCGTGATGCAAGCAGCAGTACCACGAGGTCTTTGTATCGTCGTCGTTTGCCAGCAACTTTAGCAGGGGAGAGTGTCGTATGGTGCAAACCAGGTGTAGTAGCCAAACTGATGGGGCTAGACGCCATGCCAGTGCCAGTAAGTGTTGGTGGTAAATTCAAAGGTAGTAGTAATGAAAAGTTGTGTTACATCTTGAAGCAGAGTCAACGAAACATGCTCACTATGAGGAGCAAAGGTGAGCAGAGACATGAAATGGAGAAAAGATCAATGATGCACGCTATGGATCGTAGTATTCCTGCAGCACGTAATTGTAGCAGATTTAATAATTGTAAGAAAGGCAAGGCTGCTGCTACTACTACTACTGGTTCCTGCAGTACCACATCCAAAACTACTCCAGCTGGCAATTACTGTGTTGTTAGGCCATTAGTCACCACACAGCATTCAGATAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

350

Amino Acids

38.97

Weight (kDa)

9.47

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 226 - 242 7.9e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 147
AciI CCGC 3 cut(s) 73, 409, 475
AclI AACGTT 1 cut(s) 236
AclWI GGATC 2 cut(s) 519, 885
AcsI RAATTY 1 cut(s) 749
AcuI CTGAAG 2 cut(s) 197, 469
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 4 cut(s) 437, 473, 616, 970
AgsI TTSAA 6 cut(s) 256, 337, 430, 505, 754, 790
AjnI CCWGG 2 cut(s) 85, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 304, 541, 573, 992
AluI AGCT 4 cut(s) 304, 541, 573, 992
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 519, 885
AoxI GGCC 3 cut(s) 316, 545, 1013
ApeKI GCWGC 7 cut(s) 229, 298, 301, 609, 893, 938, 941
ApoI RAATTY 1 cut(s) 749
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 134, 316, 368
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 842, 1015
AvaII GGWCC 2 cut(s) 134, 368
BauI CACGAG 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 203, 330
BbvCI CCTCAGC 1 cut(s) 542
BbvI GCAGC 7 cut(s) 241, 285, 313, 621, 905, 925, 928
BccI CCATC 3 cut(s) 29, 449, 700
BciT130I CCWGG 2 cut(s) 87, 687
BclI TGATCA 4 cut(s) 109, 115, 196, 559
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 2 cut(s) 713, 1048
BfmI CTRYAG 3 cut(s) 299, 891, 964
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 8 cut(s) 73, 230, 299, 302, 610, 894, 939, 942
BlsI GCNGC 8 cut(s) 74, 231, 300, 303, 611, 895, 940, 943
Bme1390I CCNGG 3 cut(s) 87, 372, 687
Bme18I GGWCC 2 cut(s) 134, 368
BmgT120I GGNCC 3 cut(s) 134, 316, 368
BmiI GGNNCC 1 cut(s) 961
BmrFI CCNGG 3 cut(s) 87, 372, 687
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 454, 592, 855
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 2 cut(s) 203, 330
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BpmI CTGGAG 1 cut(s) 972
Bpu10I CCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 2 cut(s) 114, 198
BsaHI GRCGYC 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 814, 844
Bse1I ACTGG 4 cut(s) 128, 725, 731, 961
Bse8I GATNNNNATC 2 cut(s) 114, 198
BseBI CCWGG 2 cut(s) 87, 687
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 3 cut(s) 384, 469, 974
BseJI GATNNNNATC 2 cut(s) 114, 198
BseMII CTCAG 2 cut(s) 533, 588
BseNI ACTGG 4 cut(s) 128, 725, 731, 961
BseRI GAGGAG 2 cut(s) 287, 835
BseXI GCAGC 7 cut(s) 241, 285, 313, 621, 905, 925, 928
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 3 cut(s) 318, 547, 1015
BsiSI CCGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 832
BsmI GAATGC 2 cut(s) 427, 1033
BsnI GGCC 3 cut(s) 318, 547, 1015
Bsp143I GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
BspACI CCGC 3 cut(s) 73, 409, 475
BspANI GGCC 3 cut(s) 318, 547, 1015
BspCNI CTCAG 2 cut(s) 534, 587
BspHI TCATGA 2 cut(s) 112, 306
BspLI GGNNCC 1 cut(s) 961
BspMAI CTGCAG 3 cut(s) 303, 895, 968
BspPI GGATC 2 cut(s) 519, 885
BspQI GCTCTTC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 477
BsrI ACTGG 4 cut(s) 128, 725, 731, 961
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
BssNI GRCGYC 1 cut(s) 717
BssSI CACGAG 1 cut(s) 619
Bst2BI CACGAG 1 cut(s) 619
Bst2UI CCWGG 2 cut(s) 87, 687
Bst4CI ACNGT 1 cut(s) 1004
Bst6I CTCTTC 2 cut(s) 264, 484
BstACI GRCGYC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 422
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 4 cut(s) 607, 648, 870, 994
BstDEI CTNAG 3 cut(s) 98, 542, 574
BstF5I GGATG 3 cut(s) 384, 469, 974
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 7 cut(s) 112, 118, 199, 514, 562, 860, 880
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
BstMWI GCNNNNNNNGC 4 cut(s) 72, 78, 422, 656
BstNI CCWGG 2 cut(s) 87, 687
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 85, 370, 685
BstSFI CTRYAG 3 cut(s) 299, 891, 964
BstV1I GCAGC 7 cut(s) 241, 285, 313, 621, 905, 925, 928
BstV2I GAAGAC 2 cut(s) 203, 330
BstXI CCANNNNNNTGG 1 cut(s) 706
BsuRI GGCC 3 cut(s) 318, 547, 1015
BtsCI GGATG 3 cut(s) 384, 469, 974
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 4 cut(s) 607, 648, 870, 994
CciI TCATGA 2 cut(s) 112, 306
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 134, 316, 368
CseI GACGC 1 cut(s) 725
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 4 cut(s) 436, 472, 615, 969
CviQI GTAC 4 cut(s) 436, 472, 615, 969
DdeI CTNAG 3 cut(s) 98, 542, 574
DpnI GATC 7 cut(s) 111, 117, 198, 513, 561, 859, 879
DpnII GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
Eam1104I CTCTTC 2 cut(s) 264, 484
EarI CTCTTC 2 cut(s) 264, 484
Eco47I GGWCC 2 cut(s) 134, 368
Eco57I CTGAAG 2 cut(s) 197, 469
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 85, 685
EcoT22I ATGCAT 1 cut(s) 427
FalI AAGNNNNNCTT 1 cut(s) 28
FbaI TGATCA 4 cut(s) 109, 115, 196, 559
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 8 cut(s) 73, 230, 299, 302, 610, 894, 939, 942
FokI GGATG 3 cut(s) 391, 476, 961
Fsp4HI GCNGC 8 cut(s) 73, 230, 299, 302, 610, 894, 939, 942
FspBI CTAG 2 cut(s) 713, 1048
GlaI GCGC 1 cut(s) 297
GluI GCNGC 8 cut(s) 73, 230, 299, 302, 610, 894, 939, 942
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 3 cut(s) 318, 547, 1015
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 717
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 3 cut(s) 104, 148, 800
HindII GTYRAC 3 cut(s) 104, 148, 800
HinfI GANTC 3 cut(s) 149, 430, 796
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 842, 1015
Hpy166II GTNNAC 3 cut(s) 104, 148, 800
Hpy188I TCNGA 4 cut(s) 400, 488, 577, 1039
Hpy188III TCNNGA 7 cut(s) 113, 215, 307, 452, 557, 599, 787
Hpy8I GTNNAC 3 cut(s) 104, 148, 800
Hpy99I CGWCG 3 cut(s) 35, 639, 642
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 1 cut(s) 1004
HpyCH4IV ACGT 2 cut(s) 236, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 78, 422, 656
HpyF3I CTNAG 3 cut(s) 98, 542, 574
HpySE526I ACGT 2 cut(s) 236, 898
Hsp92I GRCGYC 1 cut(s) 717
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 4 cut(s) 109, 115, 196, 559
Kzo9I GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
LguI GCTCTTC 1 cut(s) 484
LmnI GCTCC 1 cut(s) 822
Lsp1109I GCAGC 7 cut(s) 241, 285, 313, 621, 905, 925, 928
LweI GCATC 3 cut(s) 454, 592, 855
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 2 cut(s) 713, 1048
MaeII ACGT 2 cut(s) 236, 898
MaeIII GTNAC 2 cut(s) 779, 1021
MalI GATC 7 cut(s) 111, 117, 198, 513, 561, 859, 879
MbiI CCGCTC 1 cut(s) 477
MboI GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
MboII GAAGA 6 cut(s) 16, 203, 281, 335, 471, 579
MluCI AATT 5 cut(s) 394, 749, 901, 919, 997
MlyI GAGTC 2 cut(s) 143, 805
MmeI TCCRAC 2 cut(s) 219, 240
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 2 cut(s) 159, 915
MslI CAYNNNNRTG 2 cut(s) 111, 725
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 3 cut(s) 87, 372, 687
Mva1269I GAATGC 2 cut(s) 427, 1033
MvaI CCWGG 2 cut(s) 87, 687
MwoI GCNNNNNNNGC 4 cut(s) 72, 78, 422, 656
NciI CCSGG 1 cut(s) 372
NdeII GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
NlaIV GGNNCC 1 cut(s) 961
NmuCI GTSAC 1 cut(s) 1021
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 1 cut(s) 811
PagI TCATGA 2 cut(s) 112, 306
PciSI GCTCTTC 1 cut(s) 484
PctI GAATGC 2 cut(s) 427, 1033
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 8 cut(s) 74, 231, 300, 303, 611, 895, 940, 943
PleI GAGTC 2 cut(s) 143, 804
PpsI GAGTC 2 cut(s) 143, 804
Ppu21I YACGTR 1 cut(s) 899
PpuMI RGGWCCY 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 85, 685
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 85, 685
PspN4I GGNNCC 1 cut(s) 961
PspPI GGNCC 3 cut(s) 134, 316, 368
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 3 cut(s) 303, 895, 968
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 4 cut(s) 437, 473, 616, 970
RsaNI GTAC 4 cut(s) 436, 472, 615, 969
RseI CAYNNNNRTG 2 cut(s) 111, 725
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 2 cut(s) 159, 915
SatI GCNGC 8 cut(s) 73, 230, 299, 302, 610, 894, 939, 942
Sau3AI GATC 7 cut(s) 109, 115, 196, 511, 559, 857, 877
Sau96I GGNCC 3 cut(s) 134, 316, 368
SchI GAGTC 2 cut(s) 143, 805
ScrFI CCNGG 3 cut(s) 87, 372, 687
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 3 cut(s) 454, 592, 855
SfcI CTRYAG 3 cut(s) 299, 891, 964
SinI GGWCC 2 cut(s) 134, 368
SmiMI CAYNNNNRTG 2 cut(s) 111, 725
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 5 cut(s) 394, 749, 901, 919, 997
SsiI CCGC 3 cut(s) 73, 409, 475
SspMI CTAG 2 cut(s) 713, 1048
StyD4I CCNGG 3 cut(s) 85, 370, 685
TaaI ACNGT 1 cut(s) 1004
TaiI ACGT 2 cut(s) 239, 901
TaqI TCGA 2 cut(s) 47, 147
TasI AATT 5 cut(s) 394, 749, 901, 919, 997
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 2 cut(s) 159, 915
Tru9I TTAA 2 cut(s) 159, 915
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 7 cut(s) 229, 298, 301, 609, 893, 938, 941
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 6 cut(s) 17, 323, 336, 362, 783, 858
TspRI CASTG 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 134, 368
XapI RAATTY 1 cut(s) 749
XceI RCATGY 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 713, 1048
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.