Rh5DG575400

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017552
Physical Location & Seq
Reverse (-)
88246516 .. 88248144
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG575400.1

Sequence Viewer

Length: 822 bp
ATGGAAAGGCAGCCAACGTTGGAGGAGATGATATTGAAGTTGGATTTGGAAGAGGAGATTGCAAGAAAATCAAAGGAGCTGCAGCTCATGAAAGAGGGCCACGAAGACGATGACTACAATGTTGATATGAATGGACTAATAATGCGAGGACCGGGTAGGATGTCTTGCGTAAATAATTCAGATATTTTGCGGTCTGCAAGGAATGCATTGAATCAGTACCCTCGTTTCTCTCTTGATGGCAGGGATGCCATGTACCGCTCTTCCTTCAGAAACAACTTACATTTGCAGCAGGATCATATTGGTATTGTAGGACAGGAAAAGCTGAGGCCAACTCATCGTGATCACAGAAGAAGCTCAGATGTATGCTCATCAATGGGTCGTGATGCAAGTAGCAGTACCACGAGGTCTTTGTATCGTCGTCGTTTGCCAGCAACTTTAGCAGGGGAGAGTGTCGTATGGTGCAAACCAGGTGTAGTAGCCAAACTGATGGGGCTAGACGCCATGCCAGTACCAGTAAGTGTTGGTGGTAAATTCAAAGGTAGTAGTAATGAAAAGTTGTGTTACATCTTGAAGCAGAGTCAACGGAACATGATCACTATGAGGAGCAGAGGTGAGCAGAGACATGAAATGGAGAAAAGATCAATGATGCATGCTATGGATCGTAGTATTCCTGCAGCACGTAATTGTAGCAGATTTAATAATTGTAAGAAAGGCAAGGCTGCTACTGCTGGTTCCTGCAGTACCACATCCAAAACTACTCCAGCTGGCAATTACTGTGTTGTTAAGCCATTAGTCACCATACAGCATTCAGATCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

273

Amino Acids

30.76

Weight (kDa)

9.6

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 152 - 169 5.8e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 258
AciI CCGC 2 cut(s) 190, 256
AclI AACGTT 1 cut(s) 17
AclWI GGATC 2 cut(s) 300, 666
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 5 cut(s) 218, 254, 397, 510, 742
AgsI TTSAA 4 cut(s) 37, 211, 535, 571
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 5 cut(s) 79, 85, 322, 354, 764
AluI AGCT 5 cut(s) 79, 85, 322, 354, 764
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 2 cut(s) 300, 666
AoxI GGCC 2 cut(s) 97, 326
ApeKI GCWGC 6 cut(s) 10, 79, 82, 286, 674, 719
ApoI RAATTY 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 97, 149
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 623, 787
AvaII GGWCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 6 cut(s) 22, 66, 94, 298, 686, 706
BccI CCATC 2 cut(s) 230, 481
BciT130I CCWGG 1 cut(s) 468
BclI TGATCA 2 cut(s) 340, 591
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 494, 820
BfmI CTRYAG 3 cut(s) 80, 672, 736
BisI GCNGC 6 cut(s) 11, 80, 83, 287, 675, 720
BlsI GCNGC 6 cut(s) 12, 81, 84, 288, 676, 721
Bme1390I CCNGG 2 cut(s) 153, 468
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 97, 149
BmiI GGNNCC 1 cut(s) 733
BmrFI CCNGG 2 cut(s) 153, 468
BmsI GCATC 3 cut(s) 235, 373, 636
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bse1I ACTGG 2 cut(s) 506, 512
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 165, 250, 746
BseMII CTCAG 2 cut(s) 314, 369
BseNI ACTGG 2 cut(s) 506, 512
BseRI GAGGAG 3 cut(s) 38, 68, 616
BseXI GCAGC 6 cut(s) 22, 66, 94, 298, 686, 706
BshFI GGCC 2 cut(s) 99, 328
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 613
BsmI GAATGC 2 cut(s) 208, 805
BsnI GGCC 2 cut(s) 99, 328
Bsp143I GATC 6 cut(s) 292, 340, 591, 638, 658, 811
BspACI CCGC 2 cut(s) 190, 256
BspANI GGCC 2 cut(s) 99, 328
BspCNI CTCAG 2 cut(s) 315, 368
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 733
BspMAI CTGCAG 3 cut(s) 84, 676, 740
BspPI GGATC 2 cut(s) 300, 666
BspQI GCTCTTC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 258
BsrI ACTGG 2 cut(s) 506, 512
BssMI GATC 6 cut(s) 292, 340, 591, 638, 658, 811
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 2 cut(s) 45, 265
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 429, 651, 766
BstDEI CTNAG 2 cut(s) 323, 355
BstF5I GGATG 3 cut(s) 165, 250, 746
BstKTI GATC 6 cut(s) 295, 343, 594, 641, 661, 814
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 6 cut(s) 292, 340, 591, 638, 658, 811
BstMWI GCNNNNNNNGC 3 cut(s) 203, 437, 725
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 151, 466
BstSFI CTRYAG 3 cut(s) 80, 672, 736
BstV1I GCAGC 6 cut(s) 22, 66, 94, 298, 686, 706
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 2 cut(s) 99, 328
BtsCI GGATG 3 cut(s) 165, 250, 746
Cac8I GCNNGC 3 cut(s) 429, 651, 766
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 97, 149
CseI GACGC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 5 cut(s) 217, 253, 396, 509, 741
CviAII CATG 6 cut(s) 88, 250, 502, 589, 623, 650
CviQI GTAC 5 cut(s) 217, 253, 396, 509, 741
DdeI CTNAG 2 cut(s) 323, 355
DpnI GATC 6 cut(s) 294, 342, 593, 640, 660, 813
DpnII GATC 6 cut(s) 292, 340, 591, 638, 658, 811
Eam1104I CTCTTC 2 cut(s) 45, 265
EarI CTCTTC 2 cut(s) 45, 265
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 466
EcoT22I ATGCAT 2 cut(s) 208, 651
FaeI CATG 6 cut(s) 91, 253, 505, 592, 626, 653
FatI CATG 6 cut(s) 87, 249, 501, 588, 622, 649
FbaI TGATCA 2 cut(s) 340, 591
Fnu4HI GCNGC 6 cut(s) 11, 80, 83, 287, 675, 720
FokI GGATG 3 cut(s) 172, 257, 733
Fsp4HI GCNGC 6 cut(s) 11, 80, 83, 287, 675, 720
FspBI CTAG 2 cut(s) 494, 820
GluI GCNGC 6 cut(s) 11, 80, 83, 287, 675, 720
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 2 cut(s) 99, 328
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 6 cut(s) 91, 253, 505, 592, 626, 653
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 2 cut(s) 211, 577
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 623, 787
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 4 cut(s) 181, 269, 358, 811
Hpy188III TCNNGA 5 cut(s) 88, 233, 338, 380, 568
Hpy8I GTNNAC 1 cut(s) 581
Hpy99I CGWCG 2 cut(s) 420, 423
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 2 cut(s) 17, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 437, 725
HpyF3I CTNAG 2 cut(s) 323, 355
HpySE526I ACGT 2 cut(s) 17, 679
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 6 cut(s) 91, 253, 505, 592, 626, 653
Ksp22I TGATCA 2 cut(s) 340, 591
Kzo9I GATC 6 cut(s) 292, 340, 591, 638, 658, 811
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 76, 603
Lsp1109I GCAGC 6 cut(s) 22, 66, 94, 298, 686, 706
LweI GCATC 3 cut(s) 235, 373, 636
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 2 cut(s) 494, 820
MaeII ACGT 2 cut(s) 17, 679
MaeIII GTNAC 2 cut(s) 560, 793
MalI GATC 6 cut(s) 294, 342, 593, 640, 660, 813
MbiI CCGCTC 1 cut(s) 258
MboI GATC 6 cut(s) 292, 340, 591, 638, 658, 811
MboII GAAGA 4 cut(s) 62, 116, 252, 360
MluCI AATT 5 cut(s) 175, 530, 682, 700, 769
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 9 cut(s) 16, 46, 88, 140, 231, 318, 396, 594, 602
Mph1103I ATGCAT 2 cut(s) 208, 651
MseI TTAA 2 cut(s) 696, 783
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 153, 468
Mva1269I GAATGC 2 cut(s) 208, 805
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 203, 437, 725
NciI CCSGG 1 cut(s) 153
NdeII GATC 6 cut(s) 292, 340, 591, 638, 658, 811
NlaIII CATG 6 cut(s) 91, 253, 505, 592, 626, 653
NlaIV GGNNCC 1 cut(s) 733
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 2 cut(s) 208, 651
NspI RCATGY 1 cut(s) 653
PaeI GCATGC 1 cut(s) 653
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 265
PctI GAATGC 2 cut(s) 208, 805
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 6 cut(s) 12, 81, 84, 288, 676, 721
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 733
PspPI GGNCC 2 cut(s) 97, 149
PstI CTGCAG 3 cut(s) 84, 676, 740
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 5 cut(s) 218, 254, 397, 510, 742
RsaNI GTAC 5 cut(s) 217, 253, 396, 509, 741
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 696, 783
SatI GCNGC 6 cut(s) 11, 80, 83, 287, 675, 720
Sau3AI GATC 6 cut(s) 292, 340, 591, 638, 658, 811
Sau96I GGNCC 2 cut(s) 97, 149
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 153, 468
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 3 cut(s) 235, 373, 636
SfcI CTRYAG 3 cut(s) 80, 672, 736
SinI GGWCC 1 cut(s) 149
SphI GCATGC 1 cut(s) 653
Sse9I AATT 5 cut(s) 175, 530, 682, 700, 769
SsiI CCGC 2 cut(s) 190, 256
SspMI CTAG 2 cut(s) 494, 820
StyD4I CCNGG 2 cut(s) 151, 466
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 2 cut(s) 20, 682
TasI AATT 5 cut(s) 175, 530, 682, 700, 769
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 696, 783
Tru9I TTAA 2 cut(s) 696, 783
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 6 cut(s) 10, 79, 82, 286, 674, 719
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 4 cut(s) 104, 143, 564, 639
TspGWI ACGGA 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 530
XceI RCATGY 1 cut(s) 653
XspI CTAG 2 cut(s) 494, 820
Zsp2I ATGCAT 2 cut(s) 208, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.