FvH4_3g45980

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017552
Physical Location & Seq
Reverse (-)
38186171 .. 38187570
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45980.t1

Sequence Viewer

Length: 1068 bp
ATGCAATCAATGAGAGACGTGTCCTTGTTTCTCTTGAAAAACTCTCTGGGATCGAAGATGAAGAAAGGCTTGAGAAACTTCTGCAACGACGATGGCTCAACCTCTACCCTCAACCAACATACCTCCCCAGTAGGTCCTCTCAATGTCGAGTCTGCAGGCTCTAATAAGCATTGGCCAAATGCTGCTGCTCATACTGATCATCAATATCGTCTTCAGGAAATGGAAAGGCAGCCAACGTTGGAGGAGATGATATTGAAGTTGGATTTGGAAGAAGAGATTGCAAGAAAATCAAAGGCGCTGCAGCTCATGAAAGAGGGACATGAAGACGACAATGATCACTACAATGTTGATATGAATGGACTAATAATGCGAGGACCGGGTAGGATGTCTTGCGTAAATAACTCCGATATTTTGCGGTCTGCAAGGAATGCATTGAATCAGTACCCTCGTTTCTCTCTTGATGGCAGGGATGCCATGTACCGCTCTTCCTTCAGAAACAACTTACATTTGCAGAAAGATGATATTGCTATTGTAGGAAAGGAAAAGCCGAGGCCAGCTCATCATCGTGATCACAGAAGAAGCTCAGATGTATGCAAGTCAATGAGTGAATATTTTGATGCAAGTAGCAGTACCACGAGGTCTTTGTATCGTCGTCGTTTGCCAGCAACTTTAGCAGGGGAGAGTGTGGTATGGTGCAAACCAGGTGTAGTAGCCAAACTGATGGGGCTAGACGCCATGCCAGTACCAGTAAGTGTTGGTGCTAAATTCAAAGGTAATAGTAATGAAAAGTTGCGTTACATCTTGAAGCAGAGTCAACGGAACATGATCACTATGAGGAGCACGGGTGATCAGAGACGTGAAATGGAGAAAAGATCAACAATGCATGCTATAGATCATAATATTCCTACAGCCGGTAATTGTAGCAGATTTATTAATTGTAAGATCAAAGGCAAGGCTGCTGCTACTTCTACCACTGGTTCCTGCAGTACCGCATCCAAAACTACTCCAGCTGGCAATTACGGTGTCATGAAGCCAGTAGTCACCATACAGCATTCAGATTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

356

Amino Acids

39.75

Weight (kDa)

9.58

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 231 - 247 8e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26415
fragaria_vesca FvH4_3g45980
malus_domestica MD11G1000700.v1.1
prunus_persica Prupe.6G001000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0084091
rosa_laevigata RLG00000037081
rosa_roxburghii Rroxscaffold_1G00000550
rosa_samantha Rh5AG541700 Rh5BG567200 Rh5CG589000 Rh5DG575400
rosa_wichuraiana Rw5G050380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 483
AciI CCGC 3 cut(s) 415, 481, 990
AclI AACGTT 1 cut(s) 236
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 2 cut(s) 197, 475
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 5 cut(s) 443, 479, 631, 744, 988
AfiI CCNNNNNNNGG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 5 cut(s) 37, 256, 436, 769, 805
AjiI CACGTC 2 cut(s) 19, 857
AjnI CCWGG 1 cut(s) 700
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 5 cut(s) 304, 557, 582, 1010, 1065
AluI AGCT 5 cut(s) 304, 557, 582, 1010, 1065
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 2 cut(s) 9, 847
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 173, 551
ApeKI GCWGC 7 cut(s) 182, 185, 229, 298, 301, 956, 959
ApoI RAATTY 1 cut(s) 764
AseI ATTAAT 1 cut(s) 933
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 134, 374
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 857, 1033
AvaII GGWCC 2 cut(s) 134, 374
BalI TGGCCA 1 cut(s) 175
BauI CACGAG 1 cut(s) 634
BbsI GAAGAC 2 cut(s) 203, 330
Bbv12I GWGCWC 1 cut(s) 842
BbvI GCAGC 7 cut(s) 169, 172, 241, 285, 313, 943, 946
BccI CCATC 3 cut(s) 86, 455, 715
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 5 cut(s) 196, 334, 568, 825, 847
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 9, 847
BfaI CTAG 2 cut(s) 728, 1066
BfmI CTRYAG 5 cut(s) 153, 299, 888, 906, 982
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 7 cut(s) 183, 186, 230, 299, 302, 957, 960
BlsI GCNGC 7 cut(s) 184, 187, 231, 300, 303, 958, 961
Bme1390I CCNGG 2 cut(s) 378, 702
Bme18I GGWCC 2 cut(s) 134, 374
BmgBI CACGTC 2 cut(s) 19, 857
BmgT120I GGNCC 2 cut(s) 134, 374
BmiI GGNNCC 1 cut(s) 979
BmrFI CCNGG 2 cut(s) 378, 702
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 460, 607, 1001
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 2 cut(s) 203, 330
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 548
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 911
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 5 cut(s) 128, 740, 746, 979, 1034
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 3 cut(s) 390, 475, 992
BseLI CCNNNNNNNGG 1 cut(s) 911
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 5 cut(s) 128, 740, 746, 979, 1034
BseRI GAGGAG 2 cut(s) 257, 850
BseXI GCAGC 7 cut(s) 169, 172, 241, 285, 313, 943, 946
BshFI GGCC 2 cut(s) 175, 553
BsiHKAI GWGCWC 1 cut(s) 842
BsiSI CCGG 2 cut(s) 377, 912
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 911
BsmAI GTCTC 2 cut(s) 9, 847
BsmBI CGTCTC 2 cut(s) 9, 847
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 2 cut(s) 433, 1051
BsnI GGCC 2 cut(s) 175, 553
Bsp1286I GDGCHC 1 cut(s) 842
Bsp143I GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
BspACI CCGC 3 cut(s) 415, 481, 990
BspANI GGCC 2 cut(s) 175, 553
BspCNI CTCAG 1 cut(s) 596
BspHI TCATGA 2 cut(s) 306, 1026
BspLI GGNNCC 1 cut(s) 979
BspMAI CTGCAG 3 cut(s) 157, 303, 986
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 490
BsrBI CCGCTC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 911
BsrI ACTGG 5 cut(s) 128, 740, 746, 979, 1034
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 634
Bst2BI CACGAG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 1022
Bst6I CTCTTC 2 cut(s) 267, 490
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 5 cut(s) 157, 555, 663, 885, 1012
BstDEI CTNAG 1 cut(s) 583
BstF5I GGATG 3 cut(s) 390, 475, 992
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 9 cut(s) 53, 199, 337, 571, 828, 850, 875, 895, 945
BstMAI GTCTC 2 cut(s) 9, 847
BstMBI GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
BstMWI GCNNNNNNNGC 2 cut(s) 428, 671
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 2 cut(s) 376, 700
BstSFI CTRYAG 5 cut(s) 153, 299, 888, 906, 982
BstV1I GCAGC 7 cut(s) 169, 172, 241, 285, 313, 943, 946
BstV2I GAAGAC 2 cut(s) 203, 330
BstXI CCANNNNNNTGG 1 cut(s) 721
BsuRI GGCC 2 cut(s) 175, 553
BtrI CACGTC 2 cut(s) 19, 857
BtsCI GGATG 3 cut(s) 390, 475, 992
BtsIMutI CAGTG 1 cut(s) 972
Cac8I GCNNGC 5 cut(s) 157, 555, 663, 885, 1012
CciI TCATGA 2 cut(s) 306, 1026
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 2 cut(s) 134, 374
CseI GACGC 1 cut(s) 740
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 5 cut(s) 442, 478, 630, 743, 987
CviAII CATG 7 cut(s) 307, 320, 475, 736, 823, 884, 1027
CviQI GTAC 5 cut(s) 442, 478, 630, 743, 987
DdeI CTNAG 1 cut(s) 583
DpnI GATC 9 cut(s) 52, 198, 336, 570, 827, 849, 874, 894, 944
DpnII GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 267, 490
EarI CTCTTC 2 cut(s) 267, 490
Eco47I GGWCC 2 cut(s) 134, 374
Eco57I CTGAAG 2 cut(s) 197, 475
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 700
EcoT22I ATGCAT 2 cut(s) 433, 885
Esp3I CGTCTC 2 cut(s) 9, 847
FaeI CATG 7 cut(s) 310, 323, 478, 739, 826, 887, 1030
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 330
FatI CATG 7 cut(s) 306, 319, 474, 735, 822, 883, 1026
FbaI TGATCA 5 cut(s) 196, 334, 568, 825, 847
Fnu4HI GCNGC 7 cut(s) 183, 186, 230, 299, 302, 957, 960
FokI GGATG 3 cut(s) 397, 482, 979
Fsp4HI GCNGC 7 cut(s) 183, 186, 230, 299, 302, 957, 960
FspBI CTAG 2 cut(s) 728, 1066
GlaI GCGC 1 cut(s) 297
GluI GCNGC 7 cut(s) 183, 186, 230, 299, 302, 957, 960
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 2 cut(s) 175, 553
HapII CCGG 2 cut(s) 377, 912
HgaI GACGC 1 cut(s) 740
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 7 cut(s) 310, 323, 478, 739, 826, 887, 1030
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 815
HindII GTYRAC 1 cut(s) 815
HinfI GANTC 3 cut(s) 149, 436, 811
HpaII CCGG 2 cut(s) 377, 912
HphI GGTGA 2 cut(s) 857, 1033
Hpy166II GTNNAC 1 cut(s) 815
Hpy188I TCNGA 5 cut(s) 406, 494, 586, 852, 1057
Hpy188III TCNNGA 7 cut(s) 34, 215, 307, 458, 566, 802, 1027
Hpy8I GTNNAC 1 cut(s) 815
Hpy99I CGWCG 3 cut(s) 92, 654, 657
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 1 cut(s) 1022
HpyCH4IV ACGT 3 cut(s) 18, 236, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 671
HpyF3I CTNAG 1 cut(s) 583
HpySE526I ACGT 3 cut(s) 18, 236, 856
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 7 cut(s) 310, 323, 478, 739, 826, 887, 1030
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 5 cut(s) 196, 334, 568, 825, 847
Kzo9I GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 837
Lsp1109I GCAGC 7 cut(s) 169, 172, 241, 285, 313, 943, 946
LweI GCATC 3 cut(s) 460, 607, 1001
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 2 cut(s) 728, 1066
MaeII ACGT 3 cut(s) 18, 236, 856
MaeIII GTNAC 2 cut(s) 794, 1039
MalI GATC 9 cut(s) 52, 198, 336, 570, 827, 849, 874, 894, 944
MbiI CCGCTC 1 cut(s) 483
MboI GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
MboII GAAGA 8 cut(s) 67, 73, 203, 281, 284, 335, 477, 588
MhlI GDGCHC 1 cut(s) 842
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 4 cut(s) 764, 916, 934, 1015
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 2 cut(s) 158, 820
MmeI TCCRAC 2 cut(s) 219, 240
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 2 cut(s) 433, 885
MscI TGGCCA 1 cut(s) 175
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 2 cut(s) 342, 564
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 377, 912
MspR9I CCNGG 2 cut(s) 378, 702
Mva1269I GAATGC 2 cut(s) 433, 1051
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 428, 671
NciI CCSGG 1 cut(s) 378
NdeII GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
NlaIII CATG 7 cut(s) 310, 323, 478, 739, 826, 887, 1030
NlaIV GGNNCC 1 cut(s) 979
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 1039
NsiI ATGCAT 2 cut(s) 433, 885
NspI RCATGY 1 cut(s) 887
PaeI GCATGC 1 cut(s) 887
PagI TCATGA 2 cut(s) 306, 1026
PciSI GCTCTTC 1 cut(s) 490
PctI GAATGC 2 cut(s) 433, 1051
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 7 cut(s) 184, 187, 231, 300, 303, 958, 961
PleI GAGTC 2 cut(s) 157, 819
PpsI GAGTC 2 cut(s) 157, 819
PpuMI RGGWCCY 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 933
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 979
PspPI GGNCC 2 cut(s) 134, 374
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 3 cut(s) 157, 303, 986
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 5 cut(s) 443, 479, 631, 744, 988
RsaNI GTAC 5 cut(s) 442, 478, 630, 743, 987
RseI CAYNNNNRTG 2 cut(s) 342, 564
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 7 cut(s) 183, 186, 230, 299, 302, 957, 960
Sau3AI GATC 9 cut(s) 50, 196, 334, 568, 825, 847, 872, 892, 942
Sau96I GGNCC 2 cut(s) 134, 374
SchI GAGTC 2 cut(s) 158, 820
ScrFI CCNGG 2 cut(s) 378, 702
SduI GDGCHC 1 cut(s) 842
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 3 cut(s) 460, 607, 1001
SfcI CTRYAG 5 cut(s) 153, 299, 888, 906, 982
SinI GGWCC 2 cut(s) 134, 374
SmiMI CAYNNNNRTG 2 cut(s) 342, 564
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SphI GCATGC 1 cut(s) 887
Sse9I AATT 4 cut(s) 764, 916, 934, 1015
SsiI CCGC 3 cut(s) 415, 481, 990
SspI AATATT 2 cut(s) 611, 901
SspMI CTAG 2 cut(s) 728, 1066
StyD4I CCNGG 2 cut(s) 376, 700
TaaI ACNGT 1 cut(s) 1022
TaiI ACGT 3 cut(s) 21, 239, 859
TaqI TCGA 2 cut(s) 53, 147
TasI AATT 4 cut(s) 764, 916, 934, 1015
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 1 cut(s) 1039
TseI GCWGC 7 cut(s) 182, 185, 229, 298, 301, 956, 959
Tsp45I GTSAC 1 cut(s) 1039
TspDTI ATGAA 6 cut(s) 74, 323, 336, 368, 798, 1043
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 1 cut(s) 979
VpaK11BI GGWCC 2 cut(s) 134, 374
VspI ATTAAT 1 cut(s) 933
XapI RAATTY 1 cut(s) 764
XceI RCATGY 1 cut(s) 887
XspI CTAG 2 cut(s) 728, 1066
Zsp2I ATGCAT 2 cut(s) 433, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.