AT4G26483

rRNA (uridine-N3-)-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013902
Physical Location & Seq
Reverse (-)
13376647 .. 13376970
324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26483.1

Sequence Viewer

Length: 255 bp
ATGGATCCTGGAGCTCTGCTCATGCTTAGGAGTGCTCGAGGCCTTAGATCTTTCCTATATGTAGACGTTGATCCTTGTGATCTAAAAGGTTTCGAGGTCTTGGAAATCTATCACCCGTCCATGTCTGATGGCTTTGTGAACTCGGTAATGGTCGCACGCAAACTCACTGATCGATTAATTAAGTACGAGTGGTCAAGATTGGAGCCATACTTGTGGAACAAGGCAGATGATGATTTCCCTAATGAGGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431 Diphthami_syn_2

Protein Analysis

84

Amino Acids

9.74

Weight (kDa)

4.78

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAS PF03059 1 - 56 7.7e-17 Nicotianamine synthase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26483
fragaria_vesca FvH4_6g07450
malus_domestica MD04G1215600.v1.1 MD12G1205900.v1.1
prunus_persica Prupe.6G313000_v2.0.a1
pyrus_communis pycom04g17080 pycom12g19380
rosa_chinensis RchiOBHm_Chr3g0457051
rosa_laevigata RLG00000025248
rosa_multiflora Rmu_sc0000488.1_g000004
rosa_roxburghii Rroxscaffold_6G00422230
rosa_rugosa Rorug03G0018800
rosa_samantha Rh3AG078600 Rh3BG080400 Rh3CG080400 Rh3DG082200
rosa_wichuraiana Rw3G006750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AclWI GGATC 2 cut(s) 12, 65
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 244
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 2 cut(s) 16, 37
AlwI GGATC 2 cut(s) 12, 65
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 40
AseI ATTAAT 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 36
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 16, 37
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 9
BglII AGATCT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 6, 204
BmrFI CCNGG 1 cut(s) 9
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 244
BshFI GGCC 1 cut(s) 42
BshVI ATCGAT 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 16, 37
BsiHKCI CYCGRG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 244
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 16, 37
Bsp143I GATC 5 cut(s) 4, 47, 70, 79, 169
BspANI GGCC 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 6, 204
BspPI GGATC 2 cut(s) 12, 65
BssMI GATC 5 cut(s) 4, 47, 70, 79, 169
Bst2UI CCWGG 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 26, 44
BstKTI GATC 5 cut(s) 7, 50, 73, 82, 172
BstMBI GATC 5 cut(s) 4, 47, 70, 79, 169
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 4, 47
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 2 cut(s) 4, 47
Bsu15I ATCGAT 1 cut(s) 172
BsuRI GGCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 172
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 22, 121
CviJI RGCY 5 cut(s) 14, 42, 132, 205, 248
CviKI_1 RGCY 5 cut(s) 14, 42, 132, 205, 248
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 26, 44
DpnI GATC 5 cut(s) 6, 49, 72, 81, 171
DpnII GATC 5 cut(s) 4, 47, 70, 79, 169
Ecl136II GAGCTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 16
FaeI CATG 2 cut(s) 25, 124
FaiI YATR 5 cut(s) 23, 58, 60, 122, 208
FatI CATG 2 cut(s) 21, 120
FblI GTMKAC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 2 cut(s) 25, 124
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 64, 139
Hpy188I TCNGA 2 cut(s) 127, 254
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 64, 139
HpyCH4IV ACGT 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 26, 44
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 25, 124
Kzo9I GATC 5 cut(s) 4, 47, 70, 79, 169
LmnI GCTCC 2 cut(s) 11, 202
LpnPI CCDG 1 cut(s) 21
MaeII ACGT 1 cut(s) 66
MalI GATC 5 cut(s) 6, 49, 72, 81, 171
MboI GATC 5 cut(s) 4, 47, 70, 79, 169
MflI RGATCY 2 cut(s) 4, 47
MhlI GDGCHC 2 cut(s) 16, 37
MluCI AATT 1 cut(s) 177
MnlI CCTC 3 cut(s) 32, 88, 238
MseI TTAA 2 cut(s) 176, 180
MslI CAYNNNNRTG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
NdeII GATC 5 cut(s) 4, 47, 70, 79, 169
NlaIII CATG 2 cut(s) 25, 124
NlaIV GGNNCC 2 cut(s) 6, 204
PacI TTAATTAA 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 36
PceI AGGCCT 1 cut(s) 42
PfoI TCCNGGA 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 6, 204
PspXI VCTCGAGB 1 cut(s) 36
PsuI RGATCY 2 cut(s) 4, 47
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 211
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 176, 180
Sau3AI GATC 5 cut(s) 4, 47, 70, 79, 169
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 2 cut(s) 16, 37
SetI ASST 4 cut(s) 16, 69, 91, 99
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 42
SstI GAGCTC 1 cut(s) 16
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 7
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 37, 93, 172
TasI AATT 1 cut(s) 177
Tru1I TTAA 2 cut(s) 176, 180
Tru9I TTAA 2 cut(s) 176, 180
TscAI CASTG 1 cut(s) 172
TspRI CASTG 1 cut(s) 172
VspI ATTAAT 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.