Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0013902

Physical Location & Seq

Genomic Coordinates Forward (+)

16932 .. 17924

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgtgctgccatggcgatgctttggtccaaagagtttgcgaactctacgagcaaatctcaagcctcgagagccttaaaccctcccaagatgtcaacactctctttacccaactcgttctcacatgcatgccaccaaatccaatcgatgtcaccaagctatgcaaaagtgtgcaagaaataaggtcaaacctcataagactctgcggagaagcagaaggactcttggagtctcatttctccaccatccttggctcctatgaaaaccctcttcaccatctcgacattttcccttactactccaactacctcaagctcagcaaacttgagcactcaatcctcacccaacactttcctcaggtaccttcgaaaatagcctttgtgggttctggccctcttccccttacctcgattgtcttggcctcaaaccacctcaccactacctctttccacaactatgatatcgaccctttggccaactccaaggctcttggcttggttgaatctgatcctgacctgtccaagaggatggtgttccacaccactgacataatggatgtcacgaggggtttgaaggactatgaagtggtgtttcttgctgctctggttgggatggacaagtctgcgaaggtgaagatcattgagcacttggccgagaacatgaatcccggagcgattttgatgctgaggagtgctcatggtgctagggcttttctgtatccggtgattgacccttgtgttgatcttgtaggttttgaggttctttctgtgtttcaccctactgatgaagttattaactcggttgtgattgcccggagatcctcgtatgcaccgccggcggggatacactcatcgtcgctcgatcagaaggctgggcttaatgttggtactgtaaaacttccgaacaagtgctctgaggttgaagccttcaatcctctcaatcatggcaacaatatgatcgaggaattggcctttgatcaggagcagctttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

330

Amino Acids

36.35

Weight (kDa)

5.47

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26483
fragaria_vesca	FvH4_6g07450
malus_domestica	MD04G1215600.v1.1 MD12G1205900.v1.1
prunus_persica	Prupe.6G313000_v2.0.a1
pyrus_communis	pycom04g17080 pycom12g19380
rosa_chinensis	RchiOBHm_Chr3g0457051
rosa_laevigata	RLG00000025248
rosa_multiflora	Rmu_sc0000488.1_g000004
rosa_roxburghii	Rroxscaffold_6G00422230
rosa_rugosa	Rorug03G0018800
rosa_samantha	Rh3AG078600 Rh3BG080400 Rh3CG080400 Rh3DG082200
rosa_wichuraiana	Rw3G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	3 cut(s)	204, 830, 836
AclWI	GGATC	2 cut(s)	500, 810
AcoI	YGGCCR	2 cut(s)	471, 648
AfaI	GTAC	2 cut(s)	360, 886
AfiI	CCNNNNNNNGG	1 cut(s)	836
AgsI	TTSAA	4 cut(s)	500, 571, 920, 928
AluBI	AGCT	3 cut(s)	157, 313, 985
AluI	AGCT	3 cut(s)	157, 313, 985
Alw21I	GWGCWC	4 cut(s)	330, 645, 694, 911
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	500, 810
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	5 cut(s)	388, 417, 471, 648, 966
ApeKI	GCWGC	3 cut(s)	6, 596, 982
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	25, 389
AsuC2I	CCSGG	2 cut(s)	666, 811
AsuHPI	GGTGA	7 cut(s)	142, 263, 331, 424, 640, 733, 764
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	559
Bbv12I	GWGCWC	4 cut(s)	330, 645, 694, 911
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	251, 282, 520, 604
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciVI	GTATCC	2 cut(s)	726, 834
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	2 cut(s)	666, 811
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	702
BfuI	GTATCC	2 cut(s)	726, 834
BisI	GCNGC	3 cut(s)	7, 597, 983
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	3 cut(s)	8, 598, 984
Bme1390I	CCNGG	2 cut(s)	666, 811
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	25, 389
BmiI	GGNNCC	2 cut(s)	253, 360
BmrFI	CCNGG	2 cut(s)	666, 811
BmsI	GCATC	2 cut(s)	7, 669
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 676, 708
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu1102I	GCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	3 cut(s)	43, 293, 344
BpuMI	CCSGG	2 cut(s)	666, 811
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	10, 247, 480
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse118I	RCCGGY	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	10, 247, 480
BseGI	GGATG	4 cut(s)	243, 531, 559, 615
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMII	CTCAG	4 cut(s)	328, 368, 674, 903
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	583
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BshNI	GGYRCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	144
BsiHKAI	GWGCWC	4 cut(s)	330, 645, 694, 911
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	666, 719, 811, 833
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	4 cut(s)	330, 645, 694, 911
Bsp143I	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
Bsp1720I	GCTNAGC	1 cut(s)	314
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	204, 830, 836
BspANI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BspCNI	CTCAG	4 cut(s)	327, 367, 675, 904
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	253, 360
BspPI	GGATC	2 cut(s)	500, 810
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	832
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	3 cut(s)	10, 247, 480
BssMI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
BssSI	CACGAG	1 cut(s)	559
BssT1I	CCWWGG	3 cut(s)	10, 247, 480
Bst2BI	CACGAG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	889
Bst6I	CTCTTC	2 cut(s)	273, 399
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	128, 834
BstDEI	CTNAG	4 cut(s)	314, 354, 683, 912
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	243, 531, 559, 615
BstKTI	GATC	7 cut(s)	508, 636, 742, 818, 862, 957, 976
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
BstNSI	RCATGY	2 cut(s)	126, 130
BstSCI	CCNGG	2 cut(s)	664, 809
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	2 cut(s)	726, 834
BsuRI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	243, 531, 559, 615
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	128, 834
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	25, 389
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	359, 885
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	6 cut(s)	11, 123, 127, 658, 695, 941
CviQI	GTAC	2 cut(s)	359, 885
DdeI	CTNAG	4 cut(s)	314, 354, 683, 912
DpnI	GATC	7 cut(s)	507, 635, 741, 817, 861, 956, 975
DpnII	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
EaeI	YGGCCR	2 cut(s)	471, 648
Eam1104I	CTCTTC	2 cut(s)	273, 399
EarI	CTCTTC	2 cut(s)	273, 399
Eco130I	CCWWGG	3 cut(s)	10, 247, 480
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	3 cut(s)	10, 247, 480
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	3 cut(s)	10, 247, 480
FaeI	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
FatI	CATG	6 cut(s)	10, 122, 126, 657, 694, 940
FauI	CCCGC	1 cut(s)	829
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	3 cut(s)	7, 597, 983
FokI	GGATG	4 cut(s)	230, 538, 566, 622
Fsp4HI	GCNGC	3 cut(s)	7, 597, 983
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	3 cut(s)	7, 597, 983
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	5 cut(s)	390, 419, 473, 650, 968
HapII	CCGG	4 cut(s)	666, 719, 811, 833
Hin1II	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	5 cut(s)	198, 219, 227, 500, 661
HpaII	CCGG	4 cut(s)	666, 719, 811, 833
HphI	GGTGA	7 cut(s)	142, 263, 331, 424, 640, 733, 764
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	505, 864, 900, 913
Hpy188III	TCNNGA	5 cut(s)	67, 278, 509, 559, 977
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	856
HpyAV	CCTTC	6 cut(s)	209, 372, 565, 619, 859, 934
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4V	TGCA	4 cut(s)	126, 162, 172, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
HpyF3I	CTNAG	4 cut(s)	314, 354, 683, 912
Hsp92II	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
KpnI	GGTACC	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	832
KroNI	GCCGGC	1 cut(s)	834
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
LmnI	GCTCC	3 cut(s)	257, 668, 979
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	7, 669
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	148, 556
MalI	GATC	7 cut(s)	507, 635, 741, 817, 861, 956, 975
MboI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
MboII	GAAGA	3 cut(s)	260, 386, 643
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	4 cut(s)	330, 645, 694, 911
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	1 cut(s)	962
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	192, 213, 236
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	473
Mph1103I	ATGCAT	1 cut(s)	128
MreI	CGCCGGCG	1 cut(s)	832
MroNI	GCCGGC	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	75, 792, 876
MslI	CAYNNNNRTG	3 cut(s)	15, 125, 453
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	4 cut(s)	666, 719, 811, 833
MspR9I	CCNGG	2 cut(s)	666, 811
MwoI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
NaeI	GCCGGC	1 cut(s)	834
NciI	CCSGG	2 cut(s)	666, 811
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
NgoMIV	GCCGGC	1 cut(s)	832
NlaIII	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
NlaIV	GGNNCC	2 cut(s)	253, 360
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	148, 556
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	126, 130
NspV	TTCGAA	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	500, 661
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	8, 598, 984
PleI	GAGTC	3 cut(s)	192, 213, 235
PpsI	GAGTC	3 cut(s)	192, 213, 235
PspFI	CCCAGC	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	253, 360
PspPI	GGNCC	2 cut(s)	25, 389
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	2 cut(s)	360, 886
RsaNI	GTAC	2 cut(s)	359, 885
RseI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SaqAI	TTAA	3 cut(s)	75, 792, 876
SatI	GCNGC	3 cut(s)	7, 597, 983
Sau3AI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
Sau96I	GGNCC	2 cut(s)	25, 389
SchI	GAGTC	3 cut(s)	192, 213, 236
ScrFI	CCNGG	2 cut(s)	666, 811
SduI	GDGCHC	4 cut(s)	330, 645, 694, 911
SfaNI	GCATC	2 cut(s)	7, 669
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	365
SgrAI	CRCCGGYG	1 cut(s)	832
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SmlI	CTYRAG	4 cut(s)	58, 65, 308, 323
SmoI	CTYRAG	4 cut(s)	58, 65, 308, 323
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	1 cut(s)	962
SsiI	CCGC	3 cut(s)	204, 830, 836
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	664, 809
StyI	CCWWGG	3 cut(s)	10, 247, 480
TaaI	ACNGT	1 cut(s)	889
TaqI	TCGA	8 cut(s)	66, 144, 279, 365, 407, 462, 858, 957
TasI	AATT	1 cut(s)	962
TfiI	GAWTC	2 cut(s)	500, 661
Tru1I	TTAA	3 cut(s)	75, 792, 876
Tru9I	TTAA	3 cut(s)	75, 792, 876
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	148, 556
TseI	GCWGC	3 cut(s)	6, 596, 982
Tsp45I	GTSAC	2 cut(s)	148, 556
TspDTI	ATGAA	5 cut(s)	273, 594, 674, 798, 978
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	25
XceI	RCATGY	2 cut(s)	126, 130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.