Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013902

Physical Location & Seq

Genomic Coordinates Reverse (-)

19628076 .. 19629050

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTGTTGCCAGGGAGATGCCTTGGTACAAAGAGTGTGTGAATTGTATGAGAAAATCTCAAGCTTAGAGAGCCTTAAACCCTCCCAAGATGTCAACATGCTCTTCACCCAACTCGTCCTGACATGCATACCGCCAAGTCCAATCGATGTTTCCAAGTTATGCCAAGGGGTGCAAGAAATAAGGTCAAATCTTATAAGGCTTTGTGGAGAGGCAGAAGGACTTTTGGAGAATCACTTCTCAACAATCCTAGGCTCATATGAGCACCCTCTCGACCATCTCGACATTTTCCCTTACTATTCCAATTACCTCAAGCTTAGCAAACTTGAGTTCAACATCCTTAGCCAACACTTCACCCGTGTGCCCAGCAAAATTGCCTTTGTGGGTTCTGGCCCTCTTCCCCTTACTTCAATTGTCTTGGCCTCCAATCACCTCACCAAAACCTCTTTTGACAACTATGACATCGACACTTTGGCCAACTCCATGGCTCTTGGCTTAGTGTCATCCGATCCTGACCTATCACAAAGGATGGTCTTCCACACCACAGATATAATGGATGTCACAACTGCTTTGAAAGACTATGAAGTTGTGTTTTTGGCTGCTCTTGTTGGCATGGACAAGATGGAGAAGCTGAAAATTATCGATCACTTGGCGAAATACATGGCCCCAGGAGCAACTTTGATGCTAAGGAGTGCACACGGTGCGAGAGCTTTTCTTTATCCGGTAATTGATCCTTGTGATGATCTTAGAGGGTTTGAGGTTCTCTCTGTGTTTCATCCCACCGATGAAGTAATTAATTCGATTGTCATCGCGCGTAAATACGCATTGCCTGTTCAGCATTCATCATCAATTGATTCTCAGGAGATTAATGCTGGTGCCATTAGACTTCCCAGCAAGTGTTGTGAGATTGAAGCCTTCAATCCTTTCCAAAAACTTGGCAGCATGATTGAGGAGTTGACCTTCGAGGAGCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

325

Amino Acids

36.07

Weight (kDa)

5.04

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	6 - 274	1.2e-136	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26483
fragaria_vesca	FvH4_6g07450
malus_domestica	MD04G1215600.v1.1 MD12G1205900.v1.1
prunus_persica	Prupe.6G313000_v2.0.a1
pyrus_communis	pycom04g17080 pycom12g19380
rosa_chinensis	RchiOBHm_Chr3g0457051
rosa_laevigata	RLG00000025248
rosa_multiflora	Rmu_sc0000488.1_g000004
rosa_roxburghii	Rroxscaffold_6G00422230
rosa_rugosa	Rorug03G0018800
rosa_samantha	Rh3AG078600 Rh3BG080400 Rh3CG080400 Rh3DG082200
rosa_wichuraiana	Rw3G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	872
AccII	CGCG	2 cut(s)	809, 811
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	500, 722
AcoI	YGGCCR	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	698
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	331, 408, 571, 908, 916
AjnI	CCWGG	2 cut(s)	9, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	63, 313, 628, 707, 970
AluI	AGCT	5 cut(s)	63, 313, 628, 707, 970
Alw21I	GWGCWC	2 cut(s)	264, 694
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	500, 722
AoxI	GGCC	4 cut(s)	388, 417, 471, 660
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	3 cut(s)	596, 936, 967
AseI	ATTAAT	2 cut(s)	792, 864
Asp700I	GAANNNNTTC	1 cut(s)	233
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	2 cut(s)	389, 661
AsuHPI	GGTGA	4 cut(s)	97, 343, 419, 424
AvrII	CCTAGG	1 cut(s)	247
BaeGI	GKGCMC	2 cut(s)	363, 694
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	872
BbsI	GAAGAC	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	264, 694
BbvI	GCAGC	2 cut(s)	583, 948
BccI	CCATC	3 cut(s)	282, 520, 613
BciT130I	CCWGG	2 cut(s)	11, 666
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	597, 937, 968
BlnI	CCTAGG	1 cut(s)	247
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	3 cut(s)	598, 938, 969
Bme1390I	CCNGG	2 cut(s)	11, 666
BmgT120I	GGNCC	2 cut(s)	389, 661
BmiI	GGNNCC	2 cut(s)	663, 874
BmrFI	CCNGG	2 cut(s)	11, 666
BmsI	GCATC	2 cut(s)	7, 669
BpiI	GAAGAC	1 cut(s)	523
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 746, 778
Bpu10I	CCTNAGC	2 cut(s)	338, 683
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	3 cut(s)	43, 293, 344
Bsa29I	ATCGAT	2 cut(s)	144, 639
BsaBI	GATNNNNATC	1 cut(s)	803
BsaJI	CCNNGG	6 cut(s)	10, 21, 163, 247, 480, 664
BsaWI	WCCGGW	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	821
Bse8I	GATNNNNATC	1 cut(s)	803
BseBI	CCWGG	2 cut(s)	11, 666
BseCI	ATCGAT	2 cut(s)	144, 639
BseDI	CCNNGG	6 cut(s)	10, 21, 163, 247, 480, 664
BseGI	GGATG	5 cut(s)	333, 500, 531, 559, 772
BseJI	GATNNNNATC	1 cut(s)	803
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	1 cut(s)	869
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	2 cut(s)	363, 694
BseXI	GCAGC	2 cut(s)	583, 948
BseYI	CCCAGC	2 cut(s)	362, 887
Bsh1236I	CGCG	2 cut(s)	809, 811
BshFI	GGCC	4 cut(s)	390, 419, 473, 662
BshNI	GGYRCC	1 cut(s)	872
BshVI	ATCGAT	2 cut(s)	144, 639
BsiHKAI	GWGCWC	2 cut(s)	264, 694
BsiSI	CCGG	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	4 cut(s)	390, 419, 473, 662
Bsp1286I	GDGCHC	3 cut(s)	264, 363, 694
Bsp143I	GATC	4 cut(s)	505, 640, 727, 739
Bsp1720I	GCTNAGC	1 cut(s)	314
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	4 cut(s)	390, 419, 473, 662
BspCNI	CTCAG	1 cut(s)	868
BspDI	ATCGAT	2 cut(s)	144, 639
BspFNI	CGCG	2 cut(s)	809, 811
BspLI	GGNNCC	2 cut(s)	663, 874
BspPI	GGATC	2 cut(s)	500, 722
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	821
BssECI	CCNNGG	6 cut(s)	10, 21, 163, 247, 480, 664
BssMI	GATC	4 cut(s)	505, 640, 727, 739
BssT1I	CCWWGG	4 cut(s)	21, 163, 247, 480
Bst2UI	CCWGG	2 cut(s)	11, 666
Bst4CI	ACNGT	1 cut(s)	698
Bst6I	CTCTTC	2 cut(s)	107, 399
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstDEI	CTNAG	7 cut(s)	64, 314, 338, 493, 683, 743, 855
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	5 cut(s)	333, 500, 531, 559, 772
BstFNI	CGCG	2 cut(s)	809, 811
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	4 cut(s)	508, 643, 730, 742
BstMBI	GATC	4 cut(s)	505, 640, 727, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 668, 698, 832
BstNI	CCWGG	2 cut(s)	11, 666
BstNSI	RCATGY	2 cut(s)	100, 126
BstSCI	CCNGG	2 cut(s)	9, 664
BstSLI	GKGCMC	2 cut(s)	363, 694
BstUI	CGCG	2 cut(s)	809, 811
BstV1I	GCAGC	2 cut(s)	583, 948
BstV2I	GAAGAC	1 cut(s)	523
BstXI	CCANNNNNNTGG	2 cut(s)	481, 932
Bsu15I	ATCGAT	2 cut(s)	144, 639
BsuRI	GGCC	4 cut(s)	390, 419, 473, 662
BsuTUI	ATCGAT	2 cut(s)	144, 639
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	790
BtsCI	GGATG	5 cut(s)	333, 500, 531, 559, 772
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	2 cut(s)	389, 661
ClaI	ATCGAT	2 cut(s)	144, 639
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	6 cut(s)	97, 123, 481, 610, 658, 940
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	7 cut(s)	64, 314, 338, 493, 683, 743, 855
DpnI	GATC	4 cut(s)	507, 642, 729, 741
DpnII	GATC	4 cut(s)	505, 640, 727, 739
DraIII	CACNNNGTG	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	107, 399
EarI	CTCTTC	2 cut(s)	107, 399
Eco130I	CCWWGG	4 cut(s)	21, 163, 247, 480
EcoRII	CCWGG	2 cut(s)	9, 664
EcoT14I	CCWWGG	4 cut(s)	21, 163, 247, 480
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	4 cut(s)	21, 163, 247, 480
FaeI	CATG	6 cut(s)	100, 126, 484, 613, 661, 943
FatI	CATG	6 cut(s)	96, 122, 480, 609, 657, 939
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	597, 937, 968
FokI	GGATG	5 cut(s)	320, 487, 538, 566, 759
Fsp4HI	GCNGC	3 cut(s)	597, 937, 968
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	3 cut(s)	597, 937, 968
GsaI	CCCAGC	2 cut(s)	366, 891
HaeIII	GGCC	4 cut(s)	390, 419, 473, 662
HapII	CCGG	1 cut(s)	719
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	6 cut(s)	100, 126, 484, 613, 661, 943
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	2 cut(s)	94, 954
HindII	GTYRAC	2 cut(s)	94, 954
HindIII	AAGCTT	2 cut(s)	61, 311
HinfI	GANTC	2 cut(s)	229, 851
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	4 cut(s)	97, 343, 419, 424
Hpy166II	GTNNAC	3 cut(s)	94, 692, 954
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	5 cut(s)	118, 269, 278, 509, 857
Hpy8I	GTNNAC	3 cut(s)	94, 692, 954
HpyAV	CCTTC	3 cut(s)	209, 922, 967
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4V	TGCA	3 cut(s)	126, 172, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 668, 698, 832
HpyF3I	CTNAG	7 cut(s)	64, 314, 338, 493, 683, 743, 855
Hsp92II	CATG	6 cut(s)	100, 126, 484, 613, 661, 943
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	4 cut(s)	505, 640, 727, 739
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	668, 964
Lsp1109I	GCAGC	2 cut(s)	583, 948
LweI	GCATC	2 cut(s)	7, 669
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	4 cut(s)	507, 642, 729, 741
MboI	GATC	4 cut(s)	505, 640, 727, 739
MboII	GAAGA	3 cut(s)	94, 386, 523
MfeI	CAATTG	2 cut(s)	408, 846
MhlI	GDGCHC	3 cut(s)	264, 363, 694
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	9 cut(s)	41, 301, 369, 408, 633, 723, 789, 793, 846
MluNI	TGGCCA	1 cut(s)	473
Mox20I	TGGCCA	1 cut(s)	473
Mph1103I	ATGCAT	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	4 cut(s)	75, 792, 864, 973
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	11, 666
MunI	CAATTG	2 cut(s)	408, 846
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	2 cut(s)	11, 666
MvnI	CGCG	2 cut(s)	809, 811
MwoI	GCNNNNNNNGC	4 cut(s)	69, 668, 698, 832
NcoI	CCATGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	4 cut(s)	505, 640, 727, 739
NlaIII	CATG	6 cut(s)	100, 126, 484, 613, 661, 943
NlaIV	GGNNCC	2 cut(s)	663, 874
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	100, 126
OliI	CACNNNNGTG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	835
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	229, 851
PkrI	GCNGC	3 cut(s)	598, 938, 969
PshBI	ATTAAT	2 cut(s)	792, 864
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	9, 664
PspFI	CCCAGC	2 cut(s)	362, 887
PspGI	CCWGG	2 cut(s)	9, 664
PspN4I	GGNNCC	2 cut(s)	663, 874
PspPI	GGNCC	2 cut(s)	389, 661
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	75, 792, 864, 973
SatI	GCNGC	3 cut(s)	597, 937, 968
Sau3AI	GATC	4 cut(s)	505, 640, 727, 739
Sau96I	GGNCC	2 cut(s)	389, 661
ScrFI	CCNGG	2 cut(s)	11, 666
SduI	GDGCHC	3 cut(s)	264, 363, 694
SfaNI	GCATC	2 cut(s)	7, 669
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	58, 308, 323
SmoI	CTYRAG	3 cut(s)	58, 308, 323
Sse9I	AATT	9 cut(s)	41, 301, 369, 408, 633, 723, 789, 793, 846
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	9, 664
StyI	CCWWGG	4 cut(s)	21, 163, 247, 480
TaaI	ACNGT	1 cut(s)	698
TaqI	TCGA	7 cut(s)	144, 270, 279, 462, 639, 797, 960
TasI	AATT	9 cut(s)	41, 301, 369, 408, 633, 723, 789, 793, 846
TfiI	GAWTC	2 cut(s)	229, 851
Tru1I	TTAA	4 cut(s)	75, 792, 864, 973
Tru9I	TTAA	4 cut(s)	75, 792, 864, 973
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	3 cut(s)	596, 936, 967
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	594, 761, 798, 828
VneI	GTGCAC	1 cut(s)	690
VspI	ATTAAT	2 cut(s)	792, 864
XceI	RCATGY	2 cut(s)	100, 126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmaJI	CCTAGG	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.