Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013902

Physical Location & Seq

Genomic Coordinates Reverse (-)

28013640 .. 28014936

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTGTTGCCATGGTGATGCTTTGGTACAAAGAGTCTGTGAATTGTATGAGCAAATCTCAAGCCTTGAGAGCCTCAAACCCTCCAAAGATGTCAACATGCTCTTCACCCAACTTGTGCTCACATGCATGCCACCAAGTCCAATTGATGTTTCCAAGTTATGCCAAGGGGTGCAAGAAATAAGGTCAAAGCTTATAAGGCTTTGTGGAGAGGCAGAAGGACTTTTGGAGAATCATTTCTCAACCATCTTAGGCTCATATGAACACCCTCTTGACCATCTCACCATTTTCCCTTATTACTCTAATTACCTCAAGCTTAGCAAACTTGAGTTCACCATCCTTAGCCAACACTTCCCTCATGTTCCTAGCAAAATTGCCTTTGTGGGTTCAGGCCCTCTTCCTCTGACCTCAATTGTTTTGGCCTCCAATCACCTCACCACAACCTCTTTCCACAACTATGACATTGACCCTTCAGCCAATTCCAAGGCTCTTGGCCTGGTCTCGTCCGATCCTGACCTATCAAAAAGAATGGTTTTCCACACCACAGATATAATGGATGTCACAAATGCTTTAAAAGACTATGACGTTGTGTTTTTGGCAGCTCTTGTTGGCATGGACAAGATGGAGAAGCTGAAAATTATCGATCACTTGGCTAAGTACATGGCTCCAGGAGCAACTTTGATGCTAAGGAGTGCACATGGTGCCAGGGCCTTTCTGTATCCAGTGATTGATCCTTGTGATGATCTTAGAGGGTTTGAGGTTCTTTCTGTGTTTCATCCCACTGATGAAGTCATTAACTCAGTCGTGATTGCGCGTAAATACGCATTGCCTGCACAGCACTCATCACCAATTGATTCTCAGGGGCTTAATGCTGCTCCTATAATACTGCCCAACAAGTGTTCTGGGATTGAAGCCTTCAATCCCCTCCTCAATCATGGGAACATGATGATTGAGGAATTGGCCTTTGAGGAGCAGCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

327

Amino Acids

36.03

Weight (kDa)

5.55

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26483
fragaria_vesca	FvH4_6g07450
malus_domestica	MD04G1215600.v1.1 MD12G1205900.v1.1
prunus_persica	Prupe.6G313000_v2.0.a1
pyrus_communis	pycom04g17080 pycom12g19380
rosa_chinensis	RchiOBHm_Chr3g0457051
rosa_laevigata	RLG00000025248
rosa_multiflora	Rmu_sc0000488.1_g000004
rosa_roxburghii	Rroxscaffold_6G00422230
rosa_rugosa	Rorug03G0018800
rosa_samantha	Rh3AG078600 Rh3BG080400 Rh3CG080400 Rh3DG082200
rosa_wichuraiana	Rw3G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	698
AccII	CGCG	1 cut(s)	811
AclWI	GGATC	2 cut(s)	500, 722
AcuI	CTGAAG	1 cut(s)	453
AdeI	CACNNNGTG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	27, 656
AgsI	TTSAA	2 cut(s)	908, 916
AjnI	CCWGG	3 cut(s)	492, 664, 701
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	5 cut(s)	190, 313, 599, 628, 973
AluI	AGCT	5 cut(s)	190, 313, 599, 628, 973
Alw21I	GWGCWC	2 cut(s)	120, 694
Alw26I	GTCTC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	500, 722
AoxI	GGCC	5 cut(s)	388, 417, 490, 705, 957
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	3 cut(s)	596, 869, 970
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	2 cut(s)	389, 705
AsuHPI	GGTGA	7 cut(s)	26, 97, 271, 322, 419, 424, 834
BaeGI	GKGCMC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	698
Bbv12I	GWGCWC	2 cut(s)	120, 694
BbvI	GCAGC	2 cut(s)	608, 856
BccI	CCATC	4 cut(s)	251, 282, 341, 613
BciT130I	CCWGG	3 cut(s)	494, 666, 703
BciVI	GTATCC	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	597, 870, 971
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	3 cut(s)	598, 871, 972
Bme1390I	CCNGG	3 cut(s)	494, 666, 703
BmgT120I	GGNCC	2 cut(s)	389, 705
BmiI	GGNNCC	2 cut(s)	663, 700
BmrFI	CCNGG	3 cut(s)	494, 666, 703
BmsI	GCATC	2 cut(s)	7, 669
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	2 cut(s)	338, 683
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	4 cut(s)	43, 86, 293, 344
Bsa29I	ATCGAT	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	4 cut(s)	10, 163, 480, 702
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	821
BseBI	CCWGG	3 cut(s)	494, 666, 703
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	4 cut(s)	10, 163, 480, 702
BseGI	GGATG	3 cut(s)	333, 559, 772
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	2 cut(s)	810, 869
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	2 cut(s)	914, 980
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	608, 856
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	811
BshFI	GGCC	5 cut(s)	390, 419, 492, 707, 959
BshNI	GGYRCC	1 cut(s)	698
BshVI	ATCGAT	1 cut(s)	639
BsiHKAI	GWGCWC	2 cut(s)	120, 694
BsmAI	GTCTC	1 cut(s)	502
BsnI	GGCC	5 cut(s)	390, 419, 492, 707, 959
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	120, 694
Bsp143I	GATC	4 cut(s)	505, 640, 727, 739
Bsp1720I	GCTNAGC	1 cut(s)	314
Bsp19I	CCATGG	1 cut(s)	10
BspANI	GGCC	5 cut(s)	390, 419, 492, 707, 959
BspCNI	CTCAG	2 cut(s)	809, 868
BspDI	ATCGAT	1 cut(s)	639
BspFNI	CGCG	1 cut(s)	811
BspLI	GGNNCC	2 cut(s)	663, 700
BspPI	GGATC	2 cut(s)	500, 722
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	4 cut(s)	10, 163, 480, 702
BssMI	GATC	4 cut(s)	505, 640, 727, 739
BssT1I	CCWWGG	3 cut(s)	10, 163, 480
Bst2UI	CCWGG	3 cut(s)	494, 666, 703
Bst6I	CTCTTC	2 cut(s)	107, 399
BstAPI	GCANNNNNTGC	2 cut(s)	698, 827
BstC8I	GCNNGC	2 cut(s)	128, 828
BstDEI	CTNAG	8 cut(s)	247, 314, 338, 651, 683, 743, 796, 855
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	333, 559, 772
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	4 cut(s)	508, 643, 730, 742
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	4 cut(s)	505, 640, 727, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 196, 668, 698, 827, 832
BstNI	CCWGG	3 cut(s)	494, 666, 703
BstNSI	RCATGY	3 cut(s)	100, 126, 130
BstSCI	CCNGG	3 cut(s)	492, 664, 701
BstSLI	GKGCMC	1 cut(s)	694
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	608, 856
Bsu15I	ATCGAT	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	390, 419, 492, 707, 959
BsuTUI	ATCGAT	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	333, 559, 772
BtsIMutI	CAGTG	2 cut(s)	726, 777
Cac8I	GCNNGC	2 cut(s)	128, 828
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	2 cut(s)	389, 705
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	26, 655
CviQI	GTAC	2 cut(s)	26, 655
DdeI	CTNAG	8 cut(s)	247, 314, 338, 651, 683, 743, 796, 855
DpnI	GATC	4 cut(s)	507, 642, 729, 741
DpnII	GATC	4 cut(s)	505, 640, 727, 739
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	698
Eam1104I	CTCTTC	2 cut(s)	107, 399
EarI	CTCTTC	2 cut(s)	107, 399
Eco130I	CCWWGG	3 cut(s)	10, 163, 480
Eco31I	GGTCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	453
EcoO109I	RGGNCCY	2 cut(s)	389, 705
EcoRII	CCWGG	3 cut(s)	492, 664, 701
EcoT14I	CCWWGG	3 cut(s)	10, 163, 480
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	3 cut(s)	10, 163, 480
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	597, 870, 971
FokI	GGATG	3 cut(s)	320, 566, 759
Fsp4HI	GCNGC	3 cut(s)	597, 870, 971
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	3 cut(s)	597, 870, 971
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	5 cut(s)	390, 419, 492, 707, 959
HhaI	GCGC	1 cut(s)	811
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	188, 311
HinfI	GANTC	3 cut(s)	33, 229, 851
HphI	GGTGA	7 cut(s)	26, 97, 271, 322, 419, 424, 834
Hpy166II	GTNNAC	3 cut(s)	94, 330, 692
Hpy188I	TCNGA	2 cut(s)	402, 505
Hpy188III	TCNNGA	3 cut(s)	269, 509, 802
Hpy8I	GTNNAC	3 cut(s)	94, 330, 692
HpyAV	CCTTC	3 cut(s)	209, 477, 922
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	126, 172, 692, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 196, 668, 698, 827, 832
HpyF3I	CTNAG	8 cut(s)	247, 314, 338, 651, 683, 743, 796, 855
HpySE526I	ACGT	1 cut(s)	582
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	4 cut(s)	505, 640, 727, 739
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	4 cut(s)	667, 668, 877, 967
Lsp1109I	GCAGC	2 cut(s)	608, 856
LweI	GCATC	2 cut(s)	7, 669
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	4 cut(s)	507, 642, 729, 741
MboI	GATC	4 cut(s)	505, 640, 727, 739
MboII	GAAGA	2 cut(s)	94, 386
MfeI	CAATTG	3 cut(s)	141, 408, 846
MhlI	GDGCHC	2 cut(s)	120, 694
MluCI	AATT	9 cut(s)	41, 141, 301, 369, 408, 475, 633, 846, 953
MlyI	GAGTC	1 cut(s)	42
Mph1103I	ATGCAT	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	3 cut(s)	569, 792, 864
MslI	CAYNNNNRTG	3 cut(s)	15, 125, 453
MspR9I	CCNGG	3 cut(s)	494, 666, 703
MunI	CAATTG	3 cut(s)	141, 408, 846
MvaI	CCWGG	3 cut(s)	494, 666, 703
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	6 cut(s)	69, 196, 668, 698, 827, 832
NcoI	CCATGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	4 cut(s)	505, 640, 727, 739
NlaIV	GGNNCC	2 cut(s)	663, 700
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	3 cut(s)	100, 126, 130
PaeI	GCATGC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	229, 851
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	598, 871, 972
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	492, 664, 701
PspGI	CCWGG	3 cut(s)	492, 664, 701
PspN4I	GGNNCC	2 cut(s)	663, 700
PspPI	GGNCC	2 cut(s)	389, 705
RsaI	GTAC	2 cut(s)	27, 656
RsaNI	GTAC	2 cut(s)	26, 655
RseI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	569, 792, 864
SatI	GCNGC	3 cut(s)	597, 870, 971
Sau3AI	GATC	4 cut(s)	505, 640, 727, 739
Sau96I	GGNCC	2 cut(s)	389, 705
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	3 cut(s)	494, 666, 703
SduI	GDGCHC	2 cut(s)	120, 694
SfaNI	GCATC	2 cut(s)	7, 669
SmiMI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SmlI	CTYRAG	4 cut(s)	58, 65, 308, 323
SmoI	CTYRAG	4 cut(s)	58, 65, 308, 323
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	9 cut(s)	41, 141, 301, 369, 408, 475, 633, 846, 953
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	492, 664, 701
StyI	CCWWGG	3 cut(s)	10, 163, 480
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	639
TasI	AATT	9 cut(s)	41, 141, 301, 369, 408, 475, 633, 846, 953
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	2 cut(s)	229, 851
Tru1I	TTAA	3 cut(s)	569, 792, 864
Tru9I	TTAA	3 cut(s)	569, 792, 864
TscAI	CASTG	2 cut(s)	726, 784
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	3 cut(s)	596, 869, 970
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	273, 761, 798, 966
TspRI	CASTG	2 cut(s)	726, 784
VneI	GTGCAC	1 cut(s)	690
XceI	RCATGY	3 cut(s)	100, 126, 130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.