AT4G28210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012186
Physical Location & Seq
Forward (+)
13990595 .. 13992146
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28210.1

Sequence Viewer

Length: 1047 bp
ATGACGCTTTTAGCTCTCTCTTCTTCTCTGTCTTCTCCTTCCTTCTTCTGCCGCAATTCTCGTATTCGTTTCTCTCCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCGGGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCAACTGGAGAAAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCTCTTGTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGCCTTGTAGAGACTGCAATGTACAGTGTTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTAATTCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGGTGGGGTATGCAGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTGACCTCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTATCACAATTCAACGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAAATGGGCTGGATACAGACACTTGACTTGGATGATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

38.34

Weight (kDa)

9.76

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 84 - 348 1.5e-132 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 949
AccII CGCG 4 cut(s) 85, 152, 260, 775
AciI CCGC 7 cut(s) 52, 128, 260, 422, 689, 710, 775
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 990
AfaI GTAC 2 cut(s) 539, 770
AfiI CCNNNNNNNGG 2 cut(s) 242, 243
AflII CTTAAG 1 cut(s) 940
AgsI TTSAA 2 cut(s) 251, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AleI CACNNNNGTG 1 cut(s) 581
AluBI AGCT 6 cut(s) 14, 115, 323, 389, 403, 824
AluI AGCT 6 cut(s) 14, 115, 323, 389, 403, 824
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 6 cut(s) 161, 190, 268, 444, 521, 786
AlwI GGATC 1 cut(s) 491
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 6 cut(s) 667, 707, 821, 971, 974, 1001
ApoI RAATTY 1 cut(s) 121
AspLEI GCGC 2 cut(s) 152, 361
AsuC2I CCSGG 2 cut(s) 177, 562
AsuHPI GGTGA 2 cut(s) 116, 865
AsuII TTCGAA 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 949
BbsI GAAGAC 3 cut(s) 24, 472, 917
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 6 cut(s) 679, 719, 833, 958, 986, 988
BccI CCATC 1 cut(s) 509
BceAI ACGGC 3 cut(s) 655, 718, 946
BciVI GTATCC 1 cut(s) 1010
BcnI CCSGG 2 cut(s) 177, 562
BcoDI GTCTC 6 cut(s) 161, 190, 268, 444, 521, 786
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 3 cut(s) 630, 819, 972
BfrI CTTAAG 1 cut(s) 940
BfuI GTATCC 1 cut(s) 1010
BglII AGATCT 1 cut(s) 936
BisI GCNGC 8 cut(s) 52, 423, 668, 708, 822, 972, 975, 1002
BlsI GCNGC 8 cut(s) 53, 424, 669, 709, 823, 973, 976, 1003
Bme1390I CCNGG 2 cut(s) 177, 562
BmiI GGNNCC 3 cut(s) 174, 846, 951
BmrFI CCNGG 2 cut(s) 177, 562
BmsI GCATC 2 cut(s) 279, 623
BpiI GAAGAC 3 cut(s) 24, 472, 917
BpmI CTGGAG 2 cut(s) 309, 433
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 177, 562
BsaHI GRCGYC 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 5 cut(s) 176, 347, 597, 804, 848
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 243
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 540
BseDI CCNNGG 5 cut(s) 176, 347, 597, 804, 848
BseGI GGATG 2 cut(s) 614, 1041
BseLI CCNNNNNNNGG 2 cut(s) 242, 243
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 633, 741, 933
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 907
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 6 cut(s) 679, 719, 833, 958, 986, 988
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 4 cut(s) 85, 152, 260, 775
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 3 cut(s) 147, 176, 561
BslI CCNNNNNNNGG 2 cut(s) 242, 243
BsmAI GTCTC 6 cut(s) 161, 190, 268, 444, 521, 786
BsmBI CGTCTC 2 cut(s) 268, 786
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 444
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 287, 952
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 2 cut(s) 496, 936
Bsp19I CCATGG 2 cut(s) 347, 848
BspACI CCGC 7 cut(s) 52, 128, 260, 422, 689, 710, 775
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 3 cut(s) 632, 740, 932
BspFNI CGCG 4 cut(s) 85, 152, 260, 775
BspLI GGNNCC 3 cut(s) 174, 846, 951
BspMAI CTGCAG 2 cut(s) 823, 976
BspPI GGATC 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 949
BspTI CTTAAG 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 176, 347, 597, 804, 848
BssMI GATC 2 cut(s) 496, 936
BssNI GRCGYC 1 cut(s) 990
BssT1I CCWWGG 2 cut(s) 347, 848
Bst4CI ACNGT 4 cut(s) 135, 542, 601, 748
Bst6I CTCTTC 4 cut(s) 25, 782, 816, 921
BstACI GRCGYC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 940
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 148, 627, 665
BstDEI CTNAG 4 cut(s) 200, 619, 727, 919
BstDSI CCRYGG 3 cut(s) 347, 597, 848
BstF5I GGATG 2 cut(s) 614, 1041
BstFNI CGCG 4 cut(s) 85, 152, 260, 775
BstHHI GCGC 2 cut(s) 152, 361
BstKTI GATC 2 cut(s) 499, 939
BstMAI GTCTC 6 cut(s) 161, 190, 268, 444, 521, 786
BstMBI GATC 2 cut(s) 496, 936
BstMWI GCNNNNNNNGC 6 cut(s) 386, 428, 437, 830, 980, 1010
BstSCI CCNGG 2 cut(s) 175, 560
BstSFI CTRYAG 3 cut(s) 630, 819, 972
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 4 cut(s) 85, 152, 260, 775
BstV1I GCAGC 6 cut(s) 679, 719, 833, 958, 986, 988
BstV2I GAAGAC 3 cut(s) 24, 472, 917
BstX2I RGATCY 1 cut(s) 936
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 1 cut(s) 936
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 3 cut(s) 347, 597, 848
BtsCI GGATG 2 cut(s) 614, 1041
BtsIMutI CAGTG 2 cut(s) 547, 627
Cac8I GCNNGC 3 cut(s) 148, 627, 665
CfoI GCGC 2 cut(s) 152, 361
Cfr10I RCCGGY 1 cut(s) 146
CseI GACGC 3 cut(s) 13, 266, 979
Csp6I GTAC 2 cut(s) 538, 769
CviAII CATG 3 cut(s) 348, 849, 892
CviQI GTAC 2 cut(s) 538, 769
DdeI CTNAG 4 cut(s) 200, 619, 727, 919
DpnI GATC 2 cut(s) 498, 938
DpnII GATC 2 cut(s) 496, 936
DraI TTTAAA 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 4 cut(s) 25, 782, 816, 921
EarI CTCTTC 4 cut(s) 25, 782, 816, 921
EciI GGCGGA 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 347, 848
Eco31I GGTCTC 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 347, 848
ErhI CCWWGG 2 cut(s) 347, 848
Esp3I CGTCTC 2 cut(s) 268, 786
FaeI CATG 3 cut(s) 351, 852, 895
FatI CATG 3 cut(s) 347, 848, 891
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 8 cut(s) 52, 423, 668, 708, 822, 972, 975, 1002
FokI GGATG 1 cut(s) 601
Fsp4HI GCNGC 8 cut(s) 52, 423, 668, 708, 822, 972, 975, 1002
FspBI CTAG 1 cut(s) 887
GlaI GCGC 2 cut(s) 151, 360
GluI GCNGC 8 cut(s) 52, 423, 668, 708, 822, 972, 975, 1002
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 2 cut(s) 309, 433
HaeIII GGCC 1 cut(s) 346
HapII CCGG 3 cut(s) 147, 176, 561
HgaI GACGC 3 cut(s) 13, 266, 979
HhaI GCGC 2 cut(s) 152, 361
Hin1I GRCGYC 1 cut(s) 990
Hin1II CATG 3 cut(s) 351, 852, 895
Hin6I GCGC 2 cut(s) 150, 359
HinP1I GCGC 2 cut(s) 150, 359
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 154, 300, 653, 931
HpaI GTTAAC 1 cut(s) 594
HpaII CCGG 3 cut(s) 147, 176, 561
HphI GGTGA 2 cut(s) 116, 865
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 5 cut(s) 305, 730, 922, 936, 995
Hpy188III TCNNGA 2 cut(s) 326, 742
Hpy8I GTNNAC 1 cut(s) 594
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 3 cut(s) 48, 52, 825
HpyCH4III ACNGT 4 cut(s) 135, 542, 601, 748
HpyF10VI GCNNNNNNNGC 6 cut(s) 386, 428, 437, 830, 980, 1010
HpyF3I CTNAG 4 cut(s) 200, 619, 727, 919
Hsp92I GRCGYC 1 cut(s) 990
Hsp92II CATG 3 cut(s) 351, 852, 895
HspAI GCGC 2 cut(s) 150, 359
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 2 cut(s) 496, 936
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 4 cut(s) 178, 262, 328, 844
Lsp1109I GCAGC 6 cut(s) 679, 719, 833, 958, 986, 988
LweI GCATC 2 cut(s) 279, 623
MaeI CTAG 1 cut(s) 887
MaeIII GTNAC 2 cut(s) 679, 799
MalI GATC 2 cut(s) 498, 938
MboI GATC 2 cut(s) 496, 936
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 2 cut(s) 287, 952
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 5 cut(s) 55, 121, 336, 603, 901
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 3 cut(s) 163, 662, 940
MmeI TCCRAC 2 cut(s) 432, 1018
MnlI CCTC 6 cut(s) 207, 628, 814, 925, 928, 939
Mox20I TGGCCA 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 99, 140, 593, 941
MslI CAYNNNNRTG 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 2 cut(s) 710, 824
MspCI CTTAAG 1 cut(s) 940
MspI CCGG 3 cut(s) 147, 176, 561
MspR9I CCNGG 2 cut(s) 177, 562
MvnI CGCG 4 cut(s) 85, 152, 260, 775
MwoI GCNNNNNNNGC 6 cut(s) 386, 428, 437, 830, 980, 1010
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 177, 562
NcoI CCATGG 2 cut(s) 347, 848
NdeII GATC 2 cut(s) 496, 936
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 351, 852, 895
NlaIV GGNNCC 3 cut(s) 174, 846, 951
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 1 cut(s) 799
NspV TTCGAA 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 816
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 8 cut(s) 53, 424, 669, 709, 823, 973, 976, 1003
PleI GAGTC 3 cut(s) 162, 661, 939
PpsI GAGTC 3 cut(s) 162, 661, 939
PspFI CCCAGC 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 174, 846, 951
PstI CTGCAG 2 cut(s) 823, 976
PsuI RGATCY 1 cut(s) 936
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 539, 770
RsaNI GTAC 2 cut(s) 538, 769
RseI CAYNNNNRTG 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 4 cut(s) 99, 140, 593, 941
SatI GCNGC 8 cut(s) 52, 423, 668, 708, 822, 972, 975, 1002
Sau3AI GATC 2 cut(s) 496, 936
SchI GAGTC 3 cut(s) 163, 662, 940
ScrFI CCNGG 2 cut(s) 177, 562
SduI GDGCHC 2 cut(s) 287, 952
SfaNI GCATC 2 cut(s) 279, 623
SfcI CTRYAG 3 cut(s) 630, 819, 972
SfuI TTCGAA 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
Sse9I AATT 5 cut(s) 55, 121, 336, 603, 901
SsiI CCGC 7 cut(s) 52, 128, 260, 422, 689, 710, 775
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 2 cut(s) 175, 560
StyI CCWWGG 2 cut(s) 347, 848
TaaI ACNGT 4 cut(s) 135, 542, 601, 748
TaqI TCGA 1 cut(s) 458
TasI AATT 5 cut(s) 55, 121, 336, 603, 901
TatI WGTACW 1 cut(s) 537
TauI GCSGC 2 cut(s) 54, 425
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 4 cut(s) 99, 140, 593, 941
Tru9I TTAA 4 cut(s) 99, 140, 593, 941
TscAI CASTG 2 cut(s) 547, 627
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 6 cut(s) 667, 707, 821, 971, 974, 1001
Tsp45I GTSAC 1 cut(s) 799
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 547, 627
Vha464I CTTAAG 1 cut(s) 940
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.