FvH4_6g44760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012186
Physical Location & Seq
Reverse (-)
34467486 .. 34470128
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44760.t1

Sequence Viewer

Length: 1041 bp
ATGGCGACCACCATTCCCATCCTCTCCTCTCCAAACCCCTCCATTCTCAGAACCAAATTCACTTCCTTCTCTCCTGTCACCGCCCGGCTTCAAAACCAAGCCATTCCCTTTCGGTCTGCAACCAAAATCCAATCTTGGAAGACAAACCAAACCCATAATCTTGGTGGGTTTCCAGGGAAAGGAGTTGGGTTTGTGTTTGAGAGGAAGTTGAGGGCTCGTGTGAGTGCAAAGGAGGATGGCGGTGATGAAGCTGAGGAGGAAAGTAGAGGAGAGAGTACTATGCCGGAGCGGTTTAGGTACTTGAACAAAGAAGCTCCTGACCCTCCTGTCAGGTGGCCTTGGTTTCTGGCATCGGCCTTTCTCATCTATGCATGGAGAGCTGTCTTGTTAGAATTATCTAACTGGAGAAAGGGTGCACTAGCTATTGTCCAATTTGTGGGATACCTCTTGAAGCTTAGCTTGGCCGTCATCTTTCATTTTGTAGGCGATCCCATCACCTACATGATCAGATTCGTAGAAACAATCTTCTATGCTGTTCGCGCTTACTACTCTGAGATAGTGGCGTACGCTCCAATTCCAGAGTTGACTACAGTTATCATGCTGGCTTCAGCTGTTCTTGCTATTGCAGAAGCTGTCGTTCCAAACTCTGTAAACTGTCAACCTATTCTGCTCACGTTATCTGGTGTGGTAGGCTATGCAGTTGTGTTTGATTACATCTCAGAGCCTTTCTTCTACACGATTCTAGTGGGGTTGTATGGTTACTCACGATTTGTTAAAAGGAGGGACGATGTTACATCTGCATTGCCAGCTGCAGCTGTGTTGGCTGCTGTAGGAGAACCATGGATTAGAGTTTTGGTTCTACCATTGTTTCTGGCATTGGCCATCTTTATTTATTCAAAGAAGCTTCCTGAAAGAAAGGAGGATCTTGTAGTCACCAACAGAAAGCTTCCATTGCCCTTGTTGGGCGCAGCCTTATCTATTGGAATTCGGCTTGCTGCTAACTGGGCTGGGTACCGACATTTGACATGGAAGATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.62

Weight (kDa)

9.64

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 82 - 346 6.3e-134 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
Acc65I GGTACC 1 cut(s) 1011
AccB1I GGYRCC 1 cut(s) 1011
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 540
AciI CCGC 3 cut(s) 81, 240, 289
AclWI GGATC 2 cut(s) 482, 930
AcoI YGGCCR 2 cut(s) 462, 879
AcsI RAATTY 2 cut(s) 56, 984
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 4 cut(s) 277, 299, 566, 1013
AfiI CCNNNNNNNGG 3 cut(s) 179, 436, 962
AgsI TTSAA 4 cut(s) 92, 304, 451, 897
AjnI CCWGG 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
Alw21I GWGCWC 1 cut(s) 418
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 2 cut(s) 482, 930
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 4 cut(s) 335, 354, 462, 879
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 5 cut(s) 809, 812, 824, 968, 995
ApoI RAATTY 2 cut(s) 56, 984
Asp718I GGTACC 1 cut(s) 1011
AspLEI GCGC 2 cut(s) 542, 968
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 70, 254, 487, 925
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 1011
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 796, 811, 824, 980, 982
BccI CCATC 4 cut(s) 26, 230, 500, 890
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 85
BfaI CTAG 2 cut(s) 419, 743
BfmI CTRYAG 3 cut(s) 588, 810, 828
BfuI GTATCC 1 cut(s) 434
BisI GCNGC 5 cut(s) 810, 813, 825, 969, 996
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 5 cut(s) 811, 814, 826, 970, 997
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 85, 174
BmiI GGNNCC 1 cut(s) 1013
BmrFI CCNGG 2 cut(s) 85, 174
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 1012
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 424
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 173, 338, 839
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 436, 962
Bse1I ACTGG 2 cut(s) 407, 1007
Bse3DI GCAATG 2 cut(s) 800, 950
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 173, 338, 839
BseGI GGATG 2 cut(s) 18, 241
BseLI CCNNNNNNNGG 3 cut(s) 179, 436, 962
BseMI GCAATG 2 cut(s) 800, 950
BseMII CTCAG 4 cut(s) 61, 243, 543, 732
BseNI ACTGG 2 cut(s) 407, 1007
BseRI GAGGAG 3 cut(s) 16, 269, 282
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 5 cut(s) 796, 811, 824, 980, 982
BseYI CCCAGC 1 cut(s) 1007
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 4 cut(s) 337, 356, 464, 881
BshNI GGYRCC 1 cut(s) 1011
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 2 cut(s) 85, 284
BsiWI CGTACG 1 cut(s) 564
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 3 cut(s) 179, 436, 962
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 4 cut(s) 337, 356, 464, 881
Bsp1286I GDGCHC 2 cut(s) 217, 418
Bsp143I GATC 3 cut(s) 487, 504, 922
Bsp1720I GCTNAGC 1 cut(s) 455
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 3 cut(s) 81, 240, 289
BspANI GGCC 4 cut(s) 337, 356, 464, 881
BspCNI CTCAG 4 cut(s) 60, 244, 544, 731
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 1013
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 2 cut(s) 482, 930
BspT107I GGYRCC 1 cut(s) 1011
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 2 cut(s) 800, 950
BsrI ACTGG 2 cut(s) 407, 1007
BssECI CCNNGG 3 cut(s) 173, 338, 839
BssMI GATC 3 cut(s) 487, 504, 922
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 338, 839
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 592, 656
BstC8I GCNNGC 3 cut(s) 603, 807, 993
BstDEI CTNAG 5 cut(s) 47, 252, 455, 552, 718
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 2 cut(s) 18, 241
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 2 cut(s) 542, 968
BstKTI GATC 3 cut(s) 490, 507, 925
BstMBI GATC 3 cut(s) 487, 504, 922
BstMWI GCNNNNNNNGC 7 cut(s) 377, 539, 617, 806, 821, 952, 1004
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 83, 172
BstSFI CTRYAG 3 cut(s) 588, 810, 828
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 5 cut(s) 796, 811, 824, 980, 982
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 922
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 922
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 4 cut(s) 337, 356, 464, 881
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 2 cut(s) 18, 241
Cac8I GCNNGC 3 cut(s) 603, 807, 993
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 2 cut(s) 542, 968
Csp6I GTAC 4 cut(s) 276, 298, 565, 1012
CviAII CATG 5 cut(s) 372, 502, 598, 840, 1026
CviQI GTAC 4 cut(s) 276, 298, 565, 1012
DdeI CTNAG 5 cut(s) 47, 252, 455, 552, 718
DpnI GATC 3 cut(s) 489, 506, 924
DpnII GATC 3 cut(s) 487, 504, 922
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 2 cut(s) 462, 879
Eco130I CCWWGG 2 cut(s) 338, 839
Eco24I GRGCYC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 984
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 338, 839
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 338, 839
FaeI CATG 5 cut(s) 375, 505, 601, 843, 1029
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 797
FatI CATG 5 cut(s) 371, 501, 597, 839, 1025
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 810, 813, 825, 969, 996
FokI GGATG 2 cut(s) 5, 248
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 810, 813, 825, 969, 996
FspBI CTAG 2 cut(s) 419, 743
GlaI GCGC 2 cut(s) 541, 967
GluI GCNGC 5 cut(s) 810, 813, 825, 969, 996
GsaI CCCAGC 1 cut(s) 1011
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 4 cut(s) 337, 356, 464, 881
HapII CCGG 2 cut(s) 85, 284
HhaI GCGC 2 cut(s) 542, 968
Hin1II CATG 5 cut(s) 375, 505, 601, 843, 1029
Hin6I GCGC 2 cut(s) 540, 966
HinP1I GCGC 2 cut(s) 540, 966
HincII GTYRAC 2 cut(s) 585, 659
HindII GTYRAC 2 cut(s) 585, 659
HindIII AAGCTT 3 cut(s) 452, 902, 944
HinfI GANTC 2 cut(s) 510, 739
HpaII CCGG 2 cut(s) 85, 284
HphI GGTGA 4 cut(s) 70, 254, 487, 925
Hpy166II GTNNAC 4 cut(s) 416, 585, 652, 659
Hpy188I TCNGA 4 cut(s) 50, 509, 553, 721
Hpy188III TCNNGA 5 cut(s) 317, 448, 578, 765, 908
Hpy8I GTNNAC 4 cut(s) 416, 585, 652, 659
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 592, 656
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 8 cut(s) 119, 227, 371, 416, 626, 698, 800, 812
HpyF10VI GCNNNNNNNGC 7 cut(s) 377, 539, 617, 806, 821, 952, 1004
HpyF3I CTNAG 5 cut(s) 47, 252, 455, 552, 718
HpySE526I ACGT 1 cut(s) 674
Hsp92II CATG 5 cut(s) 375, 505, 601, 843, 1029
HspAI GCGC 2 cut(s) 540, 966
KpnI GGTACC 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 487, 504, 922
LmnI GCTCC 3 cut(s) 286, 319, 574
Lsp1109I GCAGC 5 cut(s) 796, 811, 824, 980, 982
LweI GCATC 1 cut(s) 359
MaeI CTAG 2 cut(s) 419, 743
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 4 cut(s) 76, 758, 790, 931
MalI GATC 3 cut(s) 489, 506, 924
MbiI CCGCTC 1 cut(s) 289
MboI GATC 3 cut(s) 487, 504, 922
MboII GAAGA 3 cut(s) 151, 517, 721
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 217, 418
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 5 cut(s) 56, 392, 431, 573, 984
MluNI TGGCCA 1 cut(s) 881
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 373
MscI TGGCCA 1 cut(s) 881
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 3 cut(s) 611, 809, 815
MspI CCGG 2 cut(s) 85, 284
MspR9I CCNGG 2 cut(s) 85, 174
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 7 cut(s) 377, 539, 617, 806, 821, 952, 1004
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 839
NdeII GATC 3 cut(s) 487, 504, 922
NlaIII CATG 5 cut(s) 375, 505, 601, 843, 1029
NlaIV GGNNCC 1 cut(s) 1013
NmuCI GTSAC 2 cut(s) 76, 931
NsiI ATGCAT 1 cut(s) 373
PfeI GAWTC 2 cut(s) 510, 739
Pfl23II CGTACG 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 5 cut(s) 811, 814, 826, 970, 997
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 172
PspLI CGTACG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 1013
PstI CTGCAG 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 922
PvuII CAGCTG 3 cut(s) 611, 809, 815
RsaI GTAC 4 cut(s) 277, 299, 566, 1013
RsaNI GTAC 4 cut(s) 276, 298, 565, 1012
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 5 cut(s) 810, 813, 825, 969, 996
Sau3AI GATC 3 cut(s) 487, 504, 922
ScaI AGTACT 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 85, 174
SduI GDGCHC 2 cut(s) 217, 418
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 3 cut(s) 588, 810, 828
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 5 cut(s) 56, 392, 431, 573, 984
SsiI CCGC 3 cut(s) 81, 240, 289
SspMI CTAG 2 cut(s) 419, 743
StyD4I CCNGG 2 cut(s) 83, 172
StyI CCWWGG 2 cut(s) 338, 839
TaaI ACNGT 2 cut(s) 592, 656
TaiI ACGT 1 cut(s) 677
TaqII GACCGA 1 cut(s) 102
TasI AATT 5 cut(s) 56, 392, 431, 573, 984
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 2 cut(s) 510, 739
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TseFI GTSAC 2 cut(s) 76, 931
TseI GCWGC 5 cut(s) 809, 812, 824, 968, 995
Tsp45I GTSAC 2 cut(s) 76, 931
TspDTI ATGAA 2 cut(s) 261, 464
Van91I CCANNNNNTGG 1 cut(s) 436
VneI GTGCAC 1 cut(s) 414
XapI RAATTY 2 cut(s) 56, 984
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 2 cut(s) 419, 743
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.