Rmu_sc0008565.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008565.1
OG0012186
Physical Location & Seq
Forward (+)
17829 .. 19173
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008565.1_g000007.1.cds

Sequence Viewer

Length: 852 bp
atgacgtggcaagaaaccaaggaaacggcgccgtatagaaccggtaagcaaaaggcaaaggaagccctagggtttgtgtttgggctttcgattccctatataaacaacccccacagctgcttcaacatcacaagaaatcccgtagcctctcctcttctagcattggccttcctcatctatgcatggagagctgtcttgttagagttatctaactggaaaaagggtgcactggctgttgtccaatttgtgggatacctcttgaagctttgcttggcccttatcttccatttcataggtgatcctatcacttacacgatcagattcgtagaaacaactatctatgctgttcgcgcttactactctggcatagtagcatatgctccaattcgagagttgactacagttatcatgctggcttcagctgttcttgctattgcagaagctgtcgttccaaactcagcaaactgccaacctattctgctcacgttatctggagtagtaggctatgcagttgtgtttaattacatctcagagcctttcttctacacgattctagtgggtttgtatggttactcacgatttgtgaaaaagagggatgatgttacatctgcattgccttgcgccgctgtgctggctgctgttggagaaccgtggattagagttttggttataccattgtttctggcattggccatttataaccattcgaagaagcttcctgaaagaaaggaagatgttgtagtgaccaacaggaagcttccattgcccttgttgggcgcagccttagctattggaattcggcttgctgccaagtgggctggataccggcatctaacatggaagatagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.38

Weight (kDa)

9.6

Isoelectric Point (pI)

21.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 247
AccII CGCG 1 cut(s) 351
AciI CCGC 1 cut(s) 624
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 247, 773
AgeI ACCGGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 124, 262
AjiI CACGTC 1 cut(s) 6
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 8 cut(s) 117, 191, 265, 422, 443, 715, 757, 788
AluI AGCT 8 cut(s) 117, 191, 265, 422, 443, 715, 757, 788
Alw21I GWGCWC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 3 cut(s) 165, 273, 690
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 117, 635, 779, 806
ApoI RAATTY 1 cut(s) 795
AsiGI ACCGGT 1 cut(s) 41
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 4 cut(s) 31, 353, 623, 779
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 707
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 692
BanI GGYRCC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 4 cut(s) 104, 622, 791, 793
BceAI ACGGC 2 cut(s) 16, 42
BciVI GTATCC 2 cut(s) 245, 815
BfaI CTAG 3 cut(s) 68, 158, 554
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 2 cut(s) 245, 815
BglI GCCNNNNNGGC 1 cut(s) 815
BisI GCNGC 5 cut(s) 118, 624, 636, 780, 807
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 5 cut(s) 119, 625, 637, 781, 808
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 838
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 784
Bpu14I TTCGAA 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 18, 67, 650
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 773
Bse118I RCCGGY 2 cut(s) 41, 825
Bse1I ACTGG 2 cut(s) 218, 234
Bse3DI GCAATG 2 cut(s) 611, 761
BseDI CCNNGG 3 cut(s) 18, 67, 650
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 247, 773
BseMI GCAATG 2 cut(s) 611, 761
BseMII CTCAG 2 cut(s) 471, 543
BseNI ACTGG 2 cut(s) 218, 234
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 4 cut(s) 104, 622, 791, 793
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 3 cut(s) 167, 275, 692
BshNI GGYRCC 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 42, 826
BslI CCNNNNNNNGG 2 cut(s) 247, 773
BsnI GGCC 3 cut(s) 167, 275, 692
Bsp119I TTCGAA 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 298, 315
BspACI CCGC 1 cut(s) 624
BspANI GGCC 3 cut(s) 167, 275, 692
BspCNI CTCAG 2 cut(s) 470, 542
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 707
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 611, 761
BsrFI RCCGGY 2 cut(s) 41, 825
BsrI ACTGG 2 cut(s) 218, 234
BssAI RCCGGY 2 cut(s) 41, 825
BssECI CCNNGG 3 cut(s) 18, 67, 650
BssMI GATC 2 cut(s) 298, 315
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 18, 67
Bst4CI ACNGT 2 cut(s) 403, 651
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 414, 633, 804
BstDEI CTNAG 3 cut(s) 457, 529, 784
BstDSI CCRYGG 1 cut(s) 650
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 4 cut(s) 31, 353, 623, 779
BstKTI GATC 2 cut(s) 301, 318
BstMBI GATC 2 cut(s) 298, 315
BstMWI GCNNNNNNNGC 8 cut(s) 62, 188, 350, 428, 632, 763, 785, 815
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 4 cut(s) 104, 622, 791, 793
BsuI GTATCC 2 cut(s) 245, 815
BsuRI GGCC 3 cut(s) 167, 275, 692
BtgI CCRYGG 1 cut(s) 650
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 414, 633, 804
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 4 cut(s) 31, 353, 623, 779
Cfr10I RCCGGY 2 cut(s) 41, 825
Cfr13I GGNCC 1 cut(s) 274
CspAI ACCGGT 1 cut(s) 41
CviAII CATG 3 cut(s) 183, 409, 837
DdeI CTNAG 3 cut(s) 457, 529, 784
DinI GGCGCC 1 cut(s) 30
DpnI GATC 2 cut(s) 300, 317
DpnII GATC 2 cut(s) 298, 315
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 18, 67
Eco57I CTGAAG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 18, 67
EcoT22I ATGCAT 1 cut(s) 184
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 18, 67
FaeI CATG 3 cut(s) 186, 412, 840
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 182, 408, 836
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 118, 624, 636, 780, 807
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 5 cut(s) 118, 624, 636, 780, 807
FspBI CTAG 3 cut(s) 68, 158, 554
GlaI GCGC 4 cut(s) 30, 352, 622, 778
GluI GCNGC 5 cut(s) 118, 624, 636, 780, 807
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 167, 275, 692
HapII CCGG 2 cut(s) 42, 826
HhaI GCGC 4 cut(s) 31, 353, 623, 779
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 3 cut(s) 186, 412, 840
Hin6I GCGC 4 cut(s) 29, 351, 621, 777
HinP1I GCGC 4 cut(s) 29, 351, 621, 777
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 3 cut(s) 263, 713, 755
HinfI GANTC 3 cut(s) 91, 321, 550
HpaII CCGG 2 cut(s) 42, 826
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 227, 396
Hpy188I TCNGA 2 cut(s) 320, 532
Hpy188III TCNNGA 5 cut(s) 259, 389, 492, 576, 719
Hpy8I GTNNAC 2 cut(s) 227, 396
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 403, 651
HpyCH4IV ACGT 2 cut(s) 5, 485
HpyCH4V TGCA 5 cut(s) 182, 227, 437, 509, 611
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 188, 350, 428, 632, 763, 785, 815
HpyF3I CTNAG 3 cut(s) 457, 529, 784
HpySE526I ACGT 2 cut(s) 5, 485
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 3 cut(s) 186, 412, 840
HspAI GCGC 4 cut(s) 29, 351, 621, 777
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 298, 315
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 4 cut(s) 104, 622, 791, 793
LweI GCATC 1 cut(s) 838
MaeI CTAG 3 cut(s) 68, 158, 554
MaeII ACGT 2 cut(s) 5, 485
MaeIII GTNAC 3 cut(s) 569, 601, 742
MalI GATC 2 cut(s) 300, 317
MboI GATC 2 cut(s) 298, 315
MboII GAAGA 5 cut(s) 146, 274, 532, 721, 743
MhlI GDGCHC 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 4 cut(s) 242, 384, 520, 795
MluNI TGGCCA 1 cut(s) 692
Mly113I GGCGCC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 5 cut(s) 157, 162, 182, 266, 585
Mox20I TGGCCA 1 cut(s) 692
Mph1103I ATGCAT 1 cut(s) 184
MscI TGGCCA 1 cut(s) 692
MseI TTAA 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 3 cut(s) 117, 422, 626
MspI CCGG 2 cut(s) 42, 826
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 8 cut(s) 62, 188, 350, 428, 632, 763, 785, 815
NarI GGCGCC 1 cut(s) 29
NdeI CATATG 1 cut(s) 376
NdeII GATC 2 cut(s) 298, 315
NlaIII CATG 3 cut(s) 186, 412, 840
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 742
NsiI ATGCAT 1 cut(s) 184
NspV TTCGAA 1 cut(s) 707
PfeI GAWTC 3 cut(s) 91, 321, 550
PflMI CCANNNNNTGG 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 41
PkrI GCNGC 5 cut(s) 119, 625, 637, 781, 808
PluTI GGCGCC 1 cut(s) 32
PsiI TTATAA 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 443
PvuII CAGCTG 2 cut(s) 117, 422
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 5 cut(s) 118, 624, 636, 780, 807
Sau3AI GATC 2 cut(s) 298, 315
Sau96I GGNCC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 1 cut(s) 399
SfoI GGCGCC 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 707
Sse9I AATT 4 cut(s) 242, 384, 520, 795
SsiI CCGC 1 cut(s) 624
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 3 cut(s) 68, 158, 554
StyI CCWWGG 2 cut(s) 18, 67
TaaI ACNGT 2 cut(s) 403, 651
TaiI ACGT 2 cut(s) 8, 488
TaqI TCGA 3 cut(s) 89, 388, 707
TasI AATT 4 cut(s) 242, 384, 520, 795
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 3 cut(s) 91, 321, 550
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 4 cut(s) 117, 635, 779, 806
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 1 cut(s) 280
TspRI CASTG 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 225
XapI RAATTY 1 cut(s) 795
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 3 cut(s) 68, 158, 554
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.