MD09G1093800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012186
Physical Location & Seq
Forward (+)
6847455 .. 6854580
7126 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1093800.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGCGACTTCCATTCCCACCATCTCCGCTCCAACCCCCTCCATTCTCAGACTCAAAGTCGCTTCTTTTTCTCCCCCCAGAATCCGACCTCATATCCAAACAATCCCTTTTCGCAATTCACCCAAATTCCAATGTTTGAACCCAATACAAGCTCAGAAATTTCCTGGATTTTCCGGGAAAACAAATGGGTTTTTGTTTGATAGAAAGTTGAGGGTTTGTGCGAGTGCGAAAAATGAGGGTGTTGATGCAGCTGAGGAGGAGAGTAAAGGGGAGAGTACTATGCCTGAGAGGTTCAGGTACTTGACCAAGGAAGCTCCTGACCCTCCTGTTAGGTGGCCTTGGCTTGTAGCATTGGTGTTCCTTATCTACGCATGGAGAGCTGTCTTGCTGGAATTAGCTAACTGGAGAAAGGCTGCAGTGGGCGTTGTCAGTTTTGTGGGATACCTCTTGAAACTTATCCTGGCCCTAATCTTCCATTTCATTGGTGATCCCATTACTTCTGTGATCAGATTCGTAGAAACAACACTCTATGCCATACGCGCTTTCTACTCTGGCATAGTGGCATACGCTCCAATTCCAGAGTTGACAACAGTGATCATACTGGCATCCATTGTTCTTGCTATCGCAGAAGCTGTTGTTCCAAACGCCGTAAACTGTCAACCCTTTCTTCTCACAGCATCTGGCATAGTAGCCTATGCAGCAGTGGCAGGTTACATCTCAGAGCCTTTCTTCTGGACGATTCTATTGGGGTTCTACGGTTACTCACGATTAGTTAAAAAGAGGGATGATGTTACATCCGCATTGCCTGCAGCAGCTGTGATGGCTGCCATAGGAGAACCATGGGTTAGAGTTTTGGTAATCGCATCTTATCTGGCCTTGGCCATTTTTCACCACTCAAAGAAGGTATCAGAGAAAAAGGAGGAAATTGTAGTGACTAATAGGAAGCTTCCAATGCCCTTGCTCGGTGCAGGCTTAGCCATTGGAATTCGCCTTGCTGCTAAGTGGGCCGGGTACCGGCATTTGACATGGATGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.17

Weight (kDa)

9.78

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 81 - 346 1e-139 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 698
Acc65I GGTACC 1 cut(s) 1011
AccB1I GGYRCC 1 cut(s) 1011
AccBSI CCGCTC 1 cut(s) 29
AccII CGCG 1 cut(s) 540
AciI CCGC 2 cut(s) 27, 798
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 3 cut(s) 125, 158, 984
AfaI GTAC 3 cut(s) 277, 299, 1013
AfiI CCNNNNNNNGG 2 cut(s) 962, 1014
AgsI TTSAA 2 cut(s) 139, 451
AhdI GACNNNNNGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 163, 459
AluBI AGCT 8 cut(s) 152, 251, 314, 380, 398, 632, 815, 946
AluI AGCT 8 cut(s) 152, 251, 314, 380, 398, 632, 815, 946
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 3 cut(s) 632, 680, 815
AoxI GGCC 5 cut(s) 335, 462, 873, 879, 1005
ApeKI GCWGC 7 cut(s) 248, 413, 698, 809, 812, 824, 995
ApoI RAATTY 3 cut(s) 125, 158, 984
Asp718I GGTACC 1 cut(s) 1011
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 463, 1005
AsuC2I CCSGG 2 cut(s) 175, 1009
AsuHPI GGTGA 3 cut(s) 111, 497, 881
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 1011
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 7 cut(s) 260, 400, 710, 811, 821, 824, 982
BccI CCATC 2 cut(s) 29, 814
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 2 cut(s) 165, 461
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 2 cut(s) 504, 594
BcnI CCSGG 2 cut(s) 175, 1009
BfmI CTRYAG 2 cut(s) 414, 807
BfuAI ACCTGC 1 cut(s) 698
BfuI GTATCC 1 cut(s) 434
BisI GCNGC 7 cut(s) 249, 414, 699, 810, 813, 825, 996
BlpI GCTNAGC 1 cut(s) 973
BlsI GCNGC 7 cut(s) 250, 415, 700, 811, 814, 826, 997
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 4 cut(s) 165, 175, 461, 1009
BmeRI GACNNNNNGTC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 463, 1005
BmiI GGNNCC 1 cut(s) 1013
BmrFI CCNGG 4 cut(s) 165, 175, 461, 1009
BmsI GCATC 4 cut(s) 235, 614, 686, 872
BpmI CTGGAG 1 cut(s) 424
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 973
BpuMI CCSGG 2 cut(s) 175, 1009
BsaJI CCNNGG 4 cut(s) 306, 338, 839, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 962, 1014
Bse118I RCCGGY 1 cut(s) 1014
Bse1I ACTGG 2 cut(s) 407, 606
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 2 cut(s) 165, 461
BseDI CCNNGG 4 cut(s) 306, 338, 839, 876
BseGI GGATG 4 cut(s) 605, 790, 794, 1035
BseLI CCNNNNNNNGG 2 cut(s) 962, 1014
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 5 cut(s) 61, 167, 243, 276, 732
BseNI ACTGG 2 cut(s) 407, 606
BseRI GAGGAG 2 cut(s) 269, 272
BseXI GCAGC 7 cut(s) 260, 400, 710, 811, 821, 824, 982
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 5 cut(s) 337, 464, 875, 881, 1007
BshNI GGYRCC 1 cut(s) 1011
BsiSI CCGG 3 cut(s) 174, 1008, 1015
BslI CCNNNNNNNGG 2 cut(s) 962, 1014
BsnI GGCC 5 cut(s) 337, 464, 875, 881, 1007
Bsp143I GATC 3 cut(s) 487, 504, 594
Bsp1720I GCTNAGC 1 cut(s) 973
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 2 cut(s) 27, 798
BspANI GGCC 5 cut(s) 337, 464, 875, 881, 1007
BspCNI CTCAG 5 cut(s) 60, 166, 244, 277, 731
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 1013
BspMAI CTGCAG 2 cut(s) 418, 811
BspMI ACCTGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 1011
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 407, 606
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 4 cut(s) 306, 338, 839, 876
BssMI GATC 3 cut(s) 487, 504, 594
BssT1I CCWWGG 4 cut(s) 306, 338, 839, 876
Bst2UI CCWGG 2 cut(s) 165, 461
Bst4CI ACNGT 3 cut(s) 592, 656, 758
BstAPI GCANNNNNTGC 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 807, 970
BstDEI CTNAG 7 cut(s) 47, 153, 252, 285, 718, 973, 999
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 4 cut(s) 605, 790, 794, 1035
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 3 cut(s) 490, 507, 597
BstMBI GATC 3 cut(s) 487, 504, 594
BstMWI GCNNNNNNNGC 9 cut(s) 377, 539, 698, 704, 806, 821, 952, 974, 1004
BstNI CCWGG 2 cut(s) 165, 461
BstSCI CCNGG 4 cut(s) 163, 173, 459, 1007
BstSFI CTRYAG 2 cut(s) 414, 807
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 7 cut(s) 260, 400, 710, 811, 821, 824, 982
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 5 cut(s) 337, 464, 875, 881, 1007
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 4 cut(s) 605, 790, 794, 1035
BtsI GCAGTG 2 cut(s) 423, 708
BtsIMutI CAGTG 3 cut(s) 423, 597, 708
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 807, 970
CaiI CAGNNNCTG 3 cut(s) 632, 680, 815
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 2 cut(s) 463, 1005
Csp6I GTAC 3 cut(s) 276, 298, 1012
CviAII CATG 3 cut(s) 372, 840, 1026
CviQI GTAC 3 cut(s) 276, 298, 1012
DdeI CTNAG 7 cut(s) 47, 153, 252, 285, 718, 973, 999
DpnI GATC 3 cut(s) 489, 506, 596
DpnII GATC 3 cut(s) 487, 504, 594
DriI GACNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 879
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 4 cut(s) 306, 338, 839, 876
EcoRI GAATTC 1 cut(s) 984
EcoRII CCWGG 2 cut(s) 163, 459
EcoT14I CCWWGG 4 cut(s) 306, 338, 839, 876
ErhI CCWWGG 4 cut(s) 306, 338, 839, 876
FaeI CATG 3 cut(s) 375, 843, 1029
FatI CATG 3 cut(s) 371, 839, 1025
FbaI TGATCA 2 cut(s) 504, 594
Fnu4HI GCNGC 7 cut(s) 249, 414, 699, 810, 813, 825, 996
FokI GGATG 3 cut(s) 592, 781, 797
Fsp4HI GCNGC 7 cut(s) 249, 414, 699, 810, 813, 825, 996
GlaI GCGC 1 cut(s) 541
GluI GCNGC 7 cut(s) 249, 414, 699, 810, 813, 825, 996
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 5 cut(s) 337, 464, 875, 881, 1007
HapII CCGG 3 cut(s) 174, 1008, 1015
HhaI GCGC 1 cut(s) 542
Hin1II CATG 3 cut(s) 375, 843, 1029
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 2 cut(s) 585, 659
HindII GTYRAC 2 cut(s) 585, 659
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 4 cut(s) 51, 81, 510, 739
HpaII CCGG 3 cut(s) 174, 1008, 1015
HphI GGTGA 3 cut(s) 111, 497, 881
Hpy166II GTNNAC 3 cut(s) 585, 652, 659
Hpy188I TCNGA 6 cut(s) 50, 86, 156, 509, 721, 910
Hpy188III TCNNGA 5 cut(s) 317, 448, 578, 733, 765
Hpy8I GTNNAC 3 cut(s) 585, 652, 659
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 3 cut(s) 592, 656, 758
HpyCH4V TGCA 5 cut(s) 248, 416, 698, 809, 968
HpyF10VI GCNNNNNNNGC 9 cut(s) 377, 539, 698, 704, 806, 821, 952, 974, 1004
HpyF3I CTNAG 7 cut(s) 47, 153, 252, 285, 718, 973, 999
Hsp92II CATG 3 cut(s) 375, 843, 1029
HspAI GCGC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 1015
Ksp22I TGATCA 2 cut(s) 504, 594
Kzo9I GATC 3 cut(s) 487, 504, 594
LmnI GCTCC 3 cut(s) 34, 319, 574
Lsp1109I GCAGC 7 cut(s) 260, 400, 710, 811, 821, 824, 982
LweI GCATC 4 cut(s) 235, 614, 686, 872
MaeIII GTNAC 4 cut(s) 710, 758, 790, 931
MalI GATC 3 cut(s) 489, 506, 596
MbiI CCGCTC 1 cut(s) 29
MboI GATC 3 cut(s) 487, 504, 594
MboII GAAGA 3 cut(s) 463, 659, 721
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 7 cut(s) 115, 125, 158, 392, 573, 924, 984
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 2 cut(s) 56, 109
Mox20I TGGCCA 1 cut(s) 881
MscI TGGCCA 1 cut(s) 881
MseI TTAA 1 cut(s) 774
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 2 cut(s) 251, 815
MspI CCGG 3 cut(s) 174, 1008, 1015
MspR9I CCNGG 4 cut(s) 165, 175, 461, 1009
MvaI CCWGG 2 cut(s) 165, 461
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 9 cut(s) 377, 539, 698, 704, 806, 821, 952, 974, 1004
NciI CCSGG 2 cut(s) 175, 1009
NcoI CCATGG 1 cut(s) 839
NdeII GATC 3 cut(s) 487, 504, 594
NlaIII CATG 3 cut(s) 375, 843, 1029
NlaIV GGNNCC 1 cut(s) 1013
NmuCI GTSAC 1 cut(s) 931
PfeI GAWTC 3 cut(s) 81, 510, 739
PfoI TCCNGGA 2 cut(s) 163, 173
PkrI GCNGC 7 cut(s) 250, 415, 700, 811, 814, 826, 997
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 163, 459
PspGI CCWGG 2 cut(s) 163, 459
PspN4I GGNNCC 1 cut(s) 1013
PspPI GGNCC 2 cut(s) 463, 1005
PstI CTGCAG 2 cut(s) 418, 811
PstNI CAGNNNCTG 3 cut(s) 632, 680, 815
PvuII CAGCTG 2 cut(s) 251, 815
RsaI GTAC 3 cut(s) 277, 299, 1013
RsaNI GTAC 3 cut(s) 276, 298, 1012
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 7 cut(s) 249, 414, 699, 810, 813, 825, 996
Sau3AI GATC 3 cut(s) 487, 504, 594
Sau96I GGNCC 2 cut(s) 463, 1005
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 4 cut(s) 165, 175, 461, 1009
SfaNI GCATC 4 cut(s) 235, 614, 686, 872
SfcI CTRYAG 2 cut(s) 414, 807
Sse9I AATT 7 cut(s) 115, 125, 158, 392, 573, 924, 984
SsiI CCGC 2 cut(s) 27, 798
StyD4I CCNGG 4 cut(s) 163, 173, 459, 1007
StyI CCWWGG 4 cut(s) 306, 338, 839, 876
TaaI ACNGT 3 cut(s) 592, 656, 758
TasI AATT 7 cut(s) 115, 125, 158, 392, 573, 924, 984
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 81, 510, 739
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 3 cut(s) 423, 597, 708
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 7 cut(s) 248, 413, 698, 809, 812, 824, 995
Tsp45I GTSAC 1 cut(s) 931
TspDTI ATGAA 1 cut(s) 469
TspRI CASTG 3 cut(s) 423, 597, 708
XapI RAATTY 3 cut(s) 125, 158, 984
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.