MD17G1083500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012186
Physical Location & Seq
Forward (+)
6929563 .. 6931450
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1083500.v1.1.491

Sequence Viewer

Length: 681 bp
ATGGCGACTTCCATTCCCACATTCTCCGCTCCAACCCCCTCCATTCTCAGACTCAAAATCACTTCTTTTTCTCCCCCCAGAATCCAACCTCATATCCAAACAATCCCTTTTCGCAATTCACCCAAATTCCAATGTTTGAACCGAATCCAAGCTCAGAATTTTCCTGGGGTATCCTGGAAAACAAATGGGTTTTGGTTTGAGAGAAAGTTGAGGGTTCGTGCGAGTGTGAAAAATGAGGGTGTTGATGCAGCTGAGGAGGAGAGCAGAGGGGAGAGTACTATGCCTGAGCGGTTCAGGTACTTGACCAAGGAAGCTCCTGACCCTCCTGTCAGGTGGCCTTGGCTTGTAGCGTTGGTCTTCCTTATCTATGCATGGAGAGCCGTCTTGCTGGAATTAGCTAACTGGAGAAAGGCTGCTGTGGGCGTTGTCCGTTTTGTTGGATACCCCTTGAAACTTATCCTGGCCCTAATCTTCCATTTCATTGGTGATCCCATTACTTCCGTGATCAGATTCATAGAAACAACATTGTATGCCATACGCTCTTTCTACTCTGGCATAGTGGCATACGCTCCAATTCCAGAGTTGACGACAGTGATCATACTTGCATCAACTGTTCTTGCTATCGCAGAAGCTGTTGTTCCAAATGCTGTAAACCTTTTCTTCTCACAGCATCTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.56

Weight (kDa)

9.99

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 81 - 218 7.2e-71 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccBSI CCGCTC 2 cut(s) 29, 289
AciI CCGC 2 cut(s) 27, 289
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 2 cut(s) 125, 157
AfaI GTAC 2 cut(s) 277, 299
AgsI TTSAA 2 cut(s) 139, 451
AjnI CCWGG 3 cut(s) 163, 173, 459
AluBI AGCT 5 cut(s) 152, 251, 314, 398, 632
AluI AGCT 5 cut(s) 152, 251, 314, 398, 632
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 2 cut(s) 632, 673
AoxI GGCC 2 cut(s) 335, 462
ApeKI GCWGC 2 cut(s) 248, 413
ApoI RAATTY 2 cut(s) 125, 157
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 111, 497
BbsI GAAGAC 1 cut(s) 349
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 260, 400
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 3 cut(s) 165, 175, 461
BciVI GTATCC 2 cut(s) 181, 434
BclI TGATCA 2 cut(s) 504, 594
BfuI GTATCC 2 cut(s) 181, 434
BisI GCNGC 2 cut(s) 249, 414
BlsI GCNGC 2 cut(s) 250, 415
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 165, 175, 461
BmgT120I GGNCC 1 cut(s) 463
BmrFI CCNGG 3 cut(s) 165, 175, 461
BmsI GCATC 2 cut(s) 235, 614
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 424
Bpu10I CCTNAGC 2 cut(s) 252, 285
BsaJI CCNNGG 3 cut(s) 164, 306, 338
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 3 cut(s) 165, 175, 461
BseDI CCNNGG 3 cut(s) 164, 306, 338
BseMII CTCAG 4 cut(s) 61, 167, 243, 276
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 269, 272
BseXI GCAGC 2 cut(s) 260, 400
BshFI GGCC 2 cut(s) 337, 464
BsnI GGCC 2 cut(s) 337, 464
Bsp143I GATC 3 cut(s) 487, 504, 594
BspACI CCGC 2 cut(s) 27, 289
BspANI GGCC 2 cut(s) 337, 464
BspCNI CTCAG 4 cut(s) 60, 166, 244, 277
BspPI GGATC 1 cut(s) 482
BsrBI CCGCTC 2 cut(s) 29, 289
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 164, 306, 338
BssMI GATC 3 cut(s) 487, 504, 594
BssT1I CCWWGG 2 cut(s) 306, 338
Bst2UI CCWGG 3 cut(s) 165, 175, 461
Bst4CI ACNGT 2 cut(s) 592, 613
BstDEI CTNAG 4 cut(s) 47, 153, 252, 285
BstKTI GATC 3 cut(s) 490, 507, 597
BstMBI GATC 3 cut(s) 487, 504, 594
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 3 cut(s) 165, 175, 461
BstSCI CCNGG 3 cut(s) 163, 173, 459
BstV1I GCAGC 2 cut(s) 260, 400
BstV2I GAAGAC 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuI GTATCC 2 cut(s) 181, 434
BsuRI GGCC 2 cut(s) 337, 464
BtsIMutI CAGTG 1 cut(s) 597
CaiI CAGNNNCTG 2 cut(s) 632, 673
Cfr13I GGNCC 1 cut(s) 463
Csp6I GTAC 2 cut(s) 276, 298
CviAII CATG 1 cut(s) 372
CviQI GTAC 2 cut(s) 276, 298
DdeI CTNAG 4 cut(s) 47, 153, 252, 285
DpnI GATC 3 cut(s) 489, 506, 596
DpnII GATC 3 cut(s) 487, 504, 594
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 306, 338
EcoRII CCWGG 3 cut(s) 163, 173, 459
EcoT14I CCWWGG 2 cut(s) 306, 338
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 2 cut(s) 306, 338
FaeI CATG 1 cut(s) 375
FatI CATG 1 cut(s) 371
FbaI TGATCA 2 cut(s) 504, 594
Fnu4HI GCNGC 2 cut(s) 249, 414
Fsp4HI GCNGC 2 cut(s) 249, 414
GluI GCNGC 2 cut(s) 249, 414
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 2 cut(s) 337, 464
Hin1II CATG 1 cut(s) 375
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 4 cut(s) 51, 81, 144, 510
HphI GGTGA 2 cut(s) 111, 497
Hpy166II GTNNAC 2 cut(s) 585, 652
Hpy188I TCNGA 3 cut(s) 50, 156, 509
Hpy188III TCNNGA 2 cut(s) 317, 578
Hpy8I GTNNAC 2 cut(s) 585, 652
HpyCH4III ACNGT 2 cut(s) 592, 613
HpyCH4V TGCA 3 cut(s) 248, 371, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 4 cut(s) 47, 153, 252, 285
Hsp92II CATG 1 cut(s) 375
Ksp22I TGATCA 2 cut(s) 504, 594
Kzo9I GATC 3 cut(s) 487, 504, 594
LmnI GCTCC 3 cut(s) 34, 319, 574
Lsp1109I GCAGC 2 cut(s) 260, 400
LweI GCATC 2 cut(s) 235, 614
MalI GATC 3 cut(s) 489, 506, 596
MbiI CCGCTC 2 cut(s) 29, 289
MboI GATC 3 cut(s) 487, 504, 594
MboII GAAGA 3 cut(s) 349, 463, 652
MluCI AATT 5 cut(s) 115, 125, 157, 392, 573
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 3 cut(s) 56, 109, 418
MnlI CCTC 8 cut(s) 49, 99, 204, 229, 247, 250, 260, 333
Mph1103I ATGCAT 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 165, 175, 461
MvaI CCWGG 3 cut(s) 165, 175, 461
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 3 cut(s) 487, 504, 594
NlaIII CATG 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 373
PfeI GAWTC 3 cut(s) 81, 144, 510
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 250, 415
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 163, 173, 459
PspGI CCWGG 3 cut(s) 163, 173, 459
PspPI GGNCC 1 cut(s) 463
PstNI CAGNNNCTG 2 cut(s) 632, 673
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 277, 299
RsaNI GTAC 2 cut(s) 276, 298
SatI GCNGC 2 cut(s) 249, 414
Sau3AI GATC 3 cut(s) 487, 504, 594
Sau96I GGNCC 1 cut(s) 463
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 165, 175, 461
SetI ASST 9 cut(s) 91, 154, 253, 299, 316, 335, 400, 634, 657
SfaNI GCATC 2 cut(s) 235, 614
Sse9I AATT 5 cut(s) 115, 125, 157, 392, 573
SsiI CCGC 2 cut(s) 27, 289
StyD4I CCNGG 3 cut(s) 163, 173, 459
StyI CCWWGG 2 cut(s) 306, 338
TaaI ACNGT 2 cut(s) 592, 613
TasI AATT 5 cut(s) 115, 125, 157, 392, 573
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 81, 144, 510
TscAI CASTG 1 cut(s) 597
TseI GCWGC 2 cut(s) 248, 413
TspDTI ATGAA 2 cut(s) 469, 502
TspGWI ACGGA 2 cut(s) 419, 490
TspRI CASTG 1 cut(s) 597
XapI RAATTY 2 cut(s) 125, 157
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.