Prupe.3G231600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012186
Physical Location & Seq
Reverse (-)
22869876 .. 22872425
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G231600.1

Sequence Viewer

Length: 1041 bp
ATGGCGACTTCCATTCCAGCCCTCTCCGCTCCAAGCCCCTCTACTCTCAGACTCAAAATTACTTCATTTTCTCCTCTCAGCATTCGACCACGTAAACAAACCATTCAATTTCGCTCTTCAACCAAAGTTCAAATTTTGAACCCAATACAAGCTCATAATTTTCCTGGGTTTTCCGGGAAAGCAATTGGGTTTTTGTTTGAAAGAAGATTAAGGGTTCGTGTGAGTGCAAAAAGTGATGGCGTTGATGAAGCTGAGGAAGAGACTGGAGGAGAGAGTACTATGCCTGAGCGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGGTGGCCTTGGTTTGTAGCATTGGTCTTCCTTATTTATGCATGGAGAGCTGTCTTACTGGAATTAGCTAACTGGAGAAAGGCTGCACTGGCTGTTGTCCGTTTTGTGGGATACCTCTTGAAACTTATCTTGGCCCTAATCTTCCATTTCCTTGGTGATCCCATTACTTTCATAATCAGATTCATAGAAACAACAATCTATACCCTTCGCTCTTTCTACTCTGGCATAGTGGCATATGCTCCAATTCCAGAATTGACAACGGTTATCATGCTGGCATCAACTGTCCTTGCTATCGCAGAAGCTGTTGTTCCAAACTCTATAAACTGTCAACCTTTTCTTCTCACAGCATCTGGTGTGGTAGGCTATGCAGCTGTGACAGGTTACATCTCAGAGCCTTTCTTCTGGACGATTCTAATGGGGTTGTACGGTTACTCACGATTTGTTAAAAAGAGGGATGATGTTACATCTGCATTGCCCGCAGCAGCTGTGCTGGCTGCTGTAGGAGAACCATATATTAGAGTTTTGGTGATCTCATCATATCTCGCCTTAGCCATTTTGCACCACTCAAAGAAGCTTTCGGAAAGAAAGGAAGAAATTGTAGTGACTAATAGGAAGCTTCCAATGCCCTTGCTCGGCGTAGCCTTAGCCATCGGAATTCATCTTGCTGCCAAGTGGGCTGGGTACCGGCATTTGACATGGATGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.48

Weight (kDa)

9.87

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1011
AccB1I GGYRCC 1 cut(s) 1011
AccBSI CCGCTC 2 cut(s) 29, 289
AciI CCGC 3 cut(s) 27, 289, 807
AclWI GGATC 2 cut(s) 314, 482
AcsI RAATTY 2 cut(s) 132, 984
AfaI GTAC 4 cut(s) 277, 299, 755, 1013
AfiI CCNNNNNNNGG 2 cut(s) 436, 962
AgsI TTSAA 6 cut(s) 107, 120, 131, 139, 200, 451
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 314, 482
AlwNI CAGNNNCTG 3 cut(s) 632, 680, 815
AoxI GGCC 2 cut(s) 335, 462
ApeKI GCWGC 6 cut(s) 413, 698, 809, 812, 824, 995
ApoI RAATTY 2 cut(s) 132, 984
Asp718I GGTACC 1 cut(s) 1011
AspS9I GGNCC 1 cut(s) 463
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 497, 868
BanI GGYRCC 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 349
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 6 cut(s) 400, 710, 811, 821, 824, 982
BccI CCATC 2 cut(s) 230, 986
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 434
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 828
BfuI GTATCC 1 cut(s) 434
BglI GCCNNNNNGGC 1 cut(s) 1004
BisI GCNGC 6 cut(s) 414, 699, 810, 813, 825, 996
BlsI GCNGC 6 cut(s) 415, 700, 811, 814, 826, 997
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 165, 175
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 1013
BmrFI CCNGG 2 cut(s) 165, 175
BmsI GCATC 2 cut(s) 614, 686
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 2 cut(s) 285, 424
Bpu10I CCTNAGC 4 cut(s) 252, 285, 877, 973
BpuMI CCSGG 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 164, 338, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 962
Bse118I RCCGGY 1 cut(s) 1014
Bse1I ACTGG 4 cut(s) 268, 393, 407, 423
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 164, 338, 481
BseGI GGATG 2 cut(s) 790, 1035
BseLI CCNNNNNNNGG 2 cut(s) 436, 962
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 5 cut(s) 61, 91, 243, 276, 732
BseNI ACTGG 4 cut(s) 268, 393, 407, 423
BseRI GAGGAG 2 cut(s) 63, 282
BseXI GCAGC 6 cut(s) 400, 710, 811, 821, 824, 982
BseYI CCCAGC 1 cut(s) 1007
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 2 cut(s) 337, 464
BshNI GGYRCC 1 cut(s) 1011
BsiSI CCGG 2 cut(s) 174, 1015
BslI CCNNNNNNNGG 2 cut(s) 436, 962
BsmAI GTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 2 cut(s) 337, 464
Bsp143I GATC 3 cut(s) 319, 487, 858
BspACI CCGC 3 cut(s) 27, 289, 807
BspANI GGCC 2 cut(s) 337, 464
BspCNI CTCAG 5 cut(s) 60, 90, 244, 277, 731
BspLI GGNNCC 1 cut(s) 1013
BspPI GGATC 2 cut(s) 314, 482
BspQI GCTCTTC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 1011
BsrBI CCGCTC 2 cut(s) 29, 289
BsrDI GCAATG 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 1014
BsrI ACTGG 4 cut(s) 268, 393, 407, 423
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 3 cut(s) 164, 338, 481
BssMI GATC 3 cut(s) 319, 487, 858
BssT1I CCWWGG 2 cut(s) 338, 481
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 4 cut(s) 592, 613, 656, 758
Bst6I CTCTTC 2 cut(s) 121, 252
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 603, 807, 822
BstDEI CTNAG 7 cut(s) 47, 77, 252, 285, 718, 877, 973
BstF5I GGATG 2 cut(s) 790, 1035
BstKTI GATC 3 cut(s) 322, 490, 861
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 319, 487, 858
BstMWI GCNNNNNNNGC 7 cut(s) 26, 377, 419, 806, 821, 952, 1004
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 163, 173
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 6 cut(s) 400, 710, 811, 821, 824, 982
BstV2I GAAGAC 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 2 cut(s) 337, 464
BtsCI GGATG 2 cut(s) 790, 1035
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 3 cut(s) 603, 807, 822
CaiI CAGNNNCTG 3 cut(s) 632, 680, 815
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 1 cut(s) 463
Csp6I GTAC 4 cut(s) 276, 298, 754, 1012
CviAII CATG 3 cut(s) 372, 598, 1026
CviQI GTAC 4 cut(s) 276, 298, 754, 1012
DdeI CTNAG 7 cut(s) 47, 77, 252, 285, 718, 877, 973
DpnI GATC 3 cut(s) 321, 489, 860
DpnII GATC 3 cut(s) 319, 487, 858
Eam1104I CTCTTC 2 cut(s) 121, 252
EarI CTCTTC 2 cut(s) 121, 252
Eco130I CCWWGG 2 cut(s) 338, 481
EcoRI GAATTC 1 cut(s) 984
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 338, 481
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 2 cut(s) 338, 481
FaeI CATG 3 cut(s) 375, 601, 1029
FatI CATG 3 cut(s) 371, 597, 1025
FauI CCCGC 1 cut(s) 814
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 6 cut(s) 414, 699, 810, 813, 825, 996
FokI GGATG 1 cut(s) 797
Fsp4HI GCNGC 6 cut(s) 414, 699, 810, 813, 825, 996
GluI GCNGC 6 cut(s) 414, 699, 810, 813, 825, 996
GsaI CCCAGC 1 cut(s) 1011
GsuI CTGGAG 2 cut(s) 285, 424
HaeIII GGCC 2 cut(s) 337, 464
HapII CCGG 2 cut(s) 174, 1015
Hin1II CATG 3 cut(s) 375, 601, 1029
HincII GTYRAC 1 cut(s) 659
HindII GTYRAC 1 cut(s) 659
HindIII AAGCTT 2 cut(s) 902, 944
HinfI GANTC 3 cut(s) 51, 510, 739
HpaII CCGG 2 cut(s) 174, 1015
HphI GGTGA 2 cut(s) 497, 868
Hpy166II GTNNAC 2 cut(s) 95, 659
Hpy188I TCNGA 5 cut(s) 50, 509, 721, 910, 983
Hpy188III TCNNGA 5 cut(s) 317, 448, 578, 733, 765
Hpy8I GTNNAC 2 cut(s) 95, 659
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 4 cut(s) 592, 613, 656, 758
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 6 cut(s) 227, 371, 416, 698, 800, 889
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 377, 419, 806, 821, 952, 1004
HpyF3I CTNAG 7 cut(s) 47, 77, 252, 285, 718, 877, 973
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 375, 601, 1029
KpnI GGTACC 1 cut(s) 1015
Kzo9I GATC 3 cut(s) 319, 487, 858
LguI GCTCTTC 1 cut(s) 121
LmnI GCTCC 3 cut(s) 34, 319, 574
Lsp1109I GCAGC 6 cut(s) 400, 710, 811, 821, 824, 982
LweI GCATC 2 cut(s) 614, 686
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 5 cut(s) 703, 710, 758, 790, 931
MalI GATC 3 cut(s) 321, 489, 860
MbiI CCGCTC 2 cut(s) 29, 289
MboI GATC 3 cut(s) 319, 487, 858
MboII GAAGA 8 cut(s) 108, 216, 269, 349, 463, 659, 721, 932
MfeI CAATTG 1 cut(s) 183
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 9 cut(s) 32, 49, 84, 247, 260, 324, 333, 455, 774
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 2 cut(s) 209, 774
MspA1I CMGCKG 2 cut(s) 701, 815
MspI CCGG 2 cut(s) 174, 1015
MspR9I CCNGG 2 cut(s) 165, 175
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 7 cut(s) 26, 377, 419, 806, 821, 952, 1004
NciI CCSGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 565
NdeII GATC 3 cut(s) 319, 487, 858
NlaIII CATG 3 cut(s) 375, 601, 1029
NlaIV GGNNCC 1 cut(s) 1013
NmeAIII GCCGAG 1 cut(s) 942
NmuCI GTSAC 2 cut(s) 703, 931
NsiI ATGCAT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 121
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 510, 739
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 6 cut(s) 415, 700, 811, 814, 826, 997
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Ppu21I YACGTR 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 1013
PspPI GGNCC 1 cut(s) 463
PstNI CAGNNNCTG 3 cut(s) 632, 680, 815
PvuII CAGCTG 2 cut(s) 701, 815
RsaI GTAC 4 cut(s) 277, 299, 755, 1013
RsaNI GTAC 4 cut(s) 276, 298, 754, 1012
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 2 cut(s) 209, 774
SatI GCNGC 6 cut(s) 414, 699, 810, 813, 825, 996
Sau3AI GATC 3 cut(s) 319, 487, 858
Sau96I GGNCC 1 cut(s) 463
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 165, 175
SfaNI GCATC 2 cut(s) 614, 686
SfcI CTRYAG 1 cut(s) 828
SsiI CCGC 3 cut(s) 27, 289, 807
StyD4I CCNGG 2 cut(s) 163, 173
StyI CCWWGG 2 cut(s) 338, 481
TaaI ACNGT 4 cut(s) 592, 613, 656, 758
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 85
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 2 cut(s) 510, 739
Tru1I TTAA 2 cut(s) 209, 774
Tru9I TTAA 2 cut(s) 209, 774
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 703, 931
TseI GCWGC 6 cut(s) 413, 698, 809, 812, 824, 995
Tsp45I GTSAC 2 cut(s) 703, 931
TspDTI ATGAA 5 cut(s) 54, 261, 490, 502, 977
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 423
XapI RAATTY 2 cut(s) 132, 984
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.