Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Forward (+)

14199043 .. 14200903

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAGTCACAGCATTTAACACATTGAAACTTGTATCGTCGTCTCTAGATCCGATTCCTTCAGTCTCTTGTTCTTCTTATTCCTTCTCTCTGATATATGTCGGATCTCCTTACAAGAGATGTCTAAAGCAGTCATGTTCTGTTCGAGCTATGACTTCTTCTTCTTCGGCTGCATCGTCTTCTTCTTCGTCCTTTGGATCGAGAATGGAAGAGAGTATTAGGAAAACAGTGACTGAGAACACTGTCGTTATTTACTCCAAAACTTGGTGCTCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTGTTGAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACTGGGCAACACACTGTTCCTAATGTTTTCGTATGTGGCAAGCACATTGGTGGCTGCACAGATACAGTGAAGCTTAACAGGAAAGGAGATCTGGAACTGATGTTAGCTGAAGCCAACGGTAAAAACGGTCAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

174

Amino Acids

18.81

Weight (kDa)

9.12

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	82 - 140	5.2e-14	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AclWI	GGATC	4 cut(s)	44, 112, 205, 345
AcuI	CTGAAG	3 cut(s)	45, 303, 516
AfaI	GTAC	2 cut(s)	280, 375
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	28, 301, 332
AleI	CACNNNNGTG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	149, 460, 494
AluI	AGCT	3 cut(s)	149, 460, 494
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	3 cut(s)	48, 70, 298
AlwI	GGATC	4 cut(s)	44, 112, 205, 345
AlwNI	CAGNNNCTG	2 cut(s)	233, 322
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	170, 441
AspS9I	GGNCC	2 cut(s)	347, 356
AvaII	GGWCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	171, 296
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	157, 428
BcoDI	GTCTC	3 cut(s)	48, 70, 298
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	365
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	2 cut(s)	171, 442
BlsI	GCNGC	2 cut(s)	172, 443
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	347, 356
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	171, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	3 cut(s)	327, 381, 394
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	327, 381, 394
BseXI	GCAGC	2 cut(s)	157, 428
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	3 cut(s)	48, 70, 298
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	5 cut(s)	49, 104, 197, 337, 475
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	4 cut(s)	44, 112, 205, 345
BsrI	ACTGG	3 cut(s)	327, 381, 394
BssMI	GATC	5 cut(s)	49, 104, 197, 337, 475
Bst4CI	ACNGT	7 cut(s)	229, 244, 278, 403, 454, 506, 515
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	234
BstKTI	GATC	5 cut(s)	52, 107, 200, 340, 478
BstMAI	GTCTC	3 cut(s)	48, 70, 298
BstMBI	GATC	5 cut(s)	49, 104, 197, 337, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 364
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	157, 428
BstV2I	GAAGAC	2 cut(s)	171, 296
BstX2I	RGATCY	3 cut(s)	49, 104, 475
BstYI	RGATCY	3 cut(s)	49, 104, 475
BsuRI	GGCC	1 cut(s)	358
BtsIMutI	CAGTG	5 cut(s)	234, 240, 320, 399, 459
Cac8I	GCNNGC	1 cut(s)	428
CaiI	CAGNNNCTG	2 cut(s)	233, 322
Cfr13I	GGNCC	2 cut(s)	347, 356
Csp6I	GTAC	2 cut(s)	279, 374
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	8 cut(s)	149, 170, 319, 358, 441, 460, 494, 500
CviKI_1	RGCY	8 cut(s)	149, 170, 319, 358, 441, 460, 494, 500
CviQI	GTAC	2 cut(s)	279, 374
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	5 cut(s)	51, 106, 199, 339, 477
DpnII	GATC	5 cut(s)	49, 104, 197, 337, 475
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	3 cut(s)	45, 303, 516
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	138
FaiI	YATR	6 cut(s)	97, 99, 136, 152, 274, 421
FatI	CATG	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	171, 442
Fsp4HI	GCNGC	2 cut(s)	171, 442
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	171, 442
HaeIII	GGCC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	4 cut(s)	54, 93, 104, 519
Hpy188III	TCNNGA	4 cut(s)	47, 201, 301, 479
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	69, 94, 364
HpyCH4III	ACNGT	7 cut(s)	229, 244, 278, 403, 454, 506, 515
HpyCH4V	TGCA	3 cut(s)	173, 367, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 364
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	49, 104, 197, 337, 475
LpnPI	CCDG	5 cut(s)	308, 362, 375, 451, 464
Lsp1109I	GCAGC	2 cut(s)	157, 428
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	7, 229
MalI	GATC	5 cut(s)	51, 106, 199, 339, 477
MboI	GATC	5 cut(s)	49, 104, 197, 337, 475
MboII	GAAGA	9 cut(s)	66, 150, 153, 156, 171, 174, 177, 221, 301
MflI	RGATCY	3 cut(s)	49, 104, 475
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	2 cut(s)	18, 462
MslI	CAYNNNNRTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	11, 364
NdeII	GATC	5 cut(s)	49, 104, 197, 337, 475
NlaIII	CATG	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	7, 229
OliI	CACNNNNGTG	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	172, 443
PspPI	GGNCC	2 cut(s)	347, 356
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	2 cut(s)	233, 322
PsuI	RGATCY	3 cut(s)	49, 104, 475
RsaI	GTAC	2 cut(s)	280, 375
RsaNI	GTAC	2 cut(s)	279, 374
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	18, 462
SatI	GCNGC	2 cut(s)	171, 442
Sau3AI	GATC	5 cut(s)	49, 104, 197, 337, 475
Sau96I	GGNCC	2 cut(s)	347, 356
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	4 cut(s)	151, 375, 462, 496
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	7 cut(s)	229, 244, 278, 403, 454, 506, 515
TaqI	TCGA	2 cut(s)	145, 200
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	18, 462
Tru9I	TTAA	2 cut(s)	18, 462
TscAI	CASTG	5 cut(s)	234, 247, 327, 406, 459
TseFI	GTSAC	2 cut(s)	7, 229
TseI	GCWGC	2 cut(s)	170, 441
Tsp45I	GTSAC	2 cut(s)	7, 229
TspRI	CASTG	5 cut(s)	234, 247, 327, 406, 459
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	46
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.