Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

31293650 .. 31301736

Gene Structure 8087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAGTCTCATACAATCTCACCAATTTCGCATCCGTTTCTCTAAATTCAGCTCGCATTCTTTCTTCTGCAAACAAGTCATCCATTTGCTCTCTTCCCCTCAGCAACAATAACAGTACGGGAGGCAGCTCGAGCACCAGCCTTTCCAGCGTCCATGGCAGCTCGAGACGATGGAGACCCATGTCGGTTCAGGCCATGGCTTCCTCCTCCTTCGGGTCTCGGCTCGAAGAGAGCGTTAAGAAGACGGTGGATGAGAACCCAGTTGTCGTCTATTCCAAAACTTGGTGTTCATACTCGTCTGAGGTGAAAACGTTGTTCAAAAGGCTTGGCGTGGAGCCGATCGTGATTGAATTGGATGAACTGGGTCCCCAAGGGCCACAGCTACAAAAGGTATTGGAGCGGCTTACAGGACAACATACTGTCCCAAATGTTTTTATTGGTGGGAAACACATTGGTGGTTGTACAGACACAGTGAAGTTATACCGAACAGGTGAACTCGAAACTTTACTCTCAGAAGCGAGTGCTAAGAATACACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

181

Amino Acids

19.35

Weight (kDa)

9.05

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	88 - 151	1.2e-16	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	400
AciI	CCGC	1 cut(s)	400
AclI	AACGTT	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	2 cut(s)	118, 463
AfiI	CCNNNNNNNGG	2 cut(s)	213, 282
AgsI	TTSAA	2 cut(s)	319, 350
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	53, 129, 162, 382, 540
AluI	AGCT	5 cut(s)	53, 129, 162, 382, 540
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	4 cut(s)	13, 160, 169, 222
Ama87I	CYCGRG	2 cut(s)	130, 163
AoxI	GGCC	2 cut(s)	192, 374
ApeKI	GCWGC	2 cut(s)	126, 159
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	365, 374
AsuHPI	GGTGA	3 cut(s)	13, 316, 503
AvaI	CYCGRG	2 cut(s)	130, 163
AvaII	GGWCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	138, 171
BccI	CCATC	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	13, 160, 169, 222
BisI	GCNGC	3 cut(s)	127, 160, 401
BlsI	GCNGC	3 cut(s)	128, 161, 402
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	2 cut(s)	130, 163
BmgT120I	GGNCC	2 cut(s)	365, 374
BmiI	GGNNCC	3 cut(s)	336, 366, 367
BmrI	ACTGGG	2 cut(s)	254, 371
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	2 cut(s)	254, 371
BoxI	GACNNNNGTC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	101
BsaI	GGTCTC	2 cut(s)	169, 222
BsaJI	CCNNGG	3 cut(s)	154, 195, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 282
Bse1I	ACTGG	2 cut(s)	260, 366
BseDI	CCNNGG	3 cut(s)	154, 195, 370
BseGI	GGATG	4 cut(s)	32, 80, 256, 361
BseLI	CCNNNNNNNGG	2 cut(s)	213, 282
BseMII	CTCAG	3 cut(s)	115, 291, 525
BseNI	ACTGG	2 cut(s)	260, 366
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	138, 171
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	194, 376
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	130, 163
BslFI	GGGAC	2 cut(s)	351, 407
BslI	CCNNNNNNNGG	2 cut(s)	213, 282
BsmAI	GTCTC	4 cut(s)	13, 160, 169, 222
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	351, 407
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	194, 376
Bso31I	GGTCTC	2 cut(s)	169, 222
BsoBI	CYCGRG	2 cut(s)	130, 163
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	339
Bsp19I	CCATGG	2 cut(s)	154, 195
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	194, 376
BspCNI	CTCAG	3 cut(s)	114, 292, 524
BspLI	GGNNCC	3 cut(s)	336, 366, 367
BspTNI	GGTCTC	2 cut(s)	169, 222
BsrBI	CCGCTC	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	260, 366
BssECI	CCNNGG	3 cut(s)	154, 195, 370
BssMI	GATC	1 cut(s)	339
BssT1I	CCWWGG	3 cut(s)	154, 195, 370
Bst4CI	ACNGT	4 cut(s)	116, 247, 421, 472
Bst6I	CTCTTC	2 cut(s)	99, 222
BstAUI	TGTACA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	4 cut(s)	101, 300, 511, 525
BstDSI	CCRYGG	2 cut(s)	154, 195
BstF5I	GGATG	4 cut(s)	32, 80, 256, 361
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	4 cut(s)	13, 160, 169, 222
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 147, 156
BstPAI	GACNNNNGTC	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	138, 171
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	194, 376
BtgI	CCRYGG	2 cut(s)	154, 195
BtsCI	GGATG	4 cut(s)	32, 80, 256, 361
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	365, 374
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	117, 462
CviAII	CATG	3 cut(s)	155, 181, 196
CviQI	GTAC	2 cut(s)	117, 462
DdeI	CTNAG	4 cut(s)	101, 300, 511, 525
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	99, 222
EarI	CTCTTC	2 cut(s)	99, 222
Eco130I	CCWWGG	3 cut(s)	154, 195, 370
Eco31I	GGTCTC	2 cut(s)	169, 222
Eco47I	GGWCC	1 cut(s)	365
Eco88I	CYCGRG	2 cut(s)	130, 163
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	154, 195, 370
ErhI	CCWWGG	3 cut(s)	154, 195, 370
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	3 cut(s)	158, 184, 199
FaiI	YATR	7 cut(s)	13, 156, 182, 197, 292, 417, 481
FaqI	GGGAC	2 cut(s)	351, 407
FatI	CATG	3 cut(s)	154, 180, 195
Fnu4HI	GCNGC	3 cut(s)	127, 160, 401
FokI	GGATG	4 cut(s)	19, 67, 263, 368
Fsp4HI	GCNGC	3 cut(s)	127, 160, 401
GluI	GCNGC	3 cut(s)	127, 160, 401
HaeIII	GGCC	2 cut(s)	194, 376
HgaI	GACGC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	158, 184, 199
HphI	GGTGA	3 cut(s)	13, 316, 503
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	2 cut(s)	301, 514
Hpy188III	TCNNGA	2 cut(s)	165, 343
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	4 cut(s)	116, 247, 421, 472
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 147, 156
HpyF3I	CTNAG	4 cut(s)	101, 300, 511, 525
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	158, 184, 199
KflI	GGGWCCC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	334, 397
LpnPI	CCDG	7 cut(s)	151, 160, 176, 273, 347, 393, 474
Lsp1109I	GCAGC	2 cut(s)	138, 171
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	311
MalI	GATC	1 cut(s)	341
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	1 cut(s)	339
MboII	GAAGA	4 cut(s)	57, 86, 239, 253
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	3 cut(s)	25, 46, 350
MnlI	CCTC	5 cut(s)	110, 116, 214, 217, 295
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	132, 147, 156
NcoI	CCATGG	2 cut(s)	154, 195
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	3 cut(s)	158, 184, 199
NlaIV	GGNNCC	3 cut(s)	336, 366, 367
NmeAIII	GCCGAG	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	453
PaeR7I	CTCGAG	2 cut(s)	130, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	128, 161, 402
Ple19I	CGATCG	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	181
Psp1406I	AACGTT	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	336, 366, 367
PspPI	GGNCC	2 cut(s)	365, 374
PspPPI	RGGWCCY	1 cut(s)	365
PspXI	VCTCGAGB	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	118, 463
RsaNI	GTAC	2 cut(s)	117, 462
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	127, 160, 401
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	365, 374
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	9 cut(s)	55, 131, 164, 306, 314, 384, 393, 493, 542
SfaNI	GCATC	1 cut(s)	41
Sfr274I	CTCGAG	2 cut(s)	130, 163
SinI	GGWCC	1 cut(s)	365
SlaI	CTCGAG	2 cut(s)	130, 163
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	130, 163
SmoI	CTYRAG	2 cut(s)	130, 163
Sse9I	AATT	3 cut(s)	25, 46, 350
SsiI	CCGC	1 cut(s)	400
StyI	CCWWGG	3 cut(s)	154, 195, 370
TaaI	ACNGT	4 cut(s)	116, 247, 421, 472
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	4 cut(s)	131, 164, 225, 498
TasI	AATT	3 cut(s)	25, 46, 350
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	477
TseI	GCWGC	2 cut(s)	126, 159
TspDTI	ATGAA	2 cut(s)	279, 372
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	477
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	46
XhoI	CTCGAG	2 cut(s)	130, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.