Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

19510008 .. 19512968

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAGTCTCGAATAACCTCACCAATTTCACATCTGTTTCTCTAAATTCTGCTCGCATTCTTTCTTCTACGAACAAGTCCTCCATTTGCTCTGCTCCTTTGAGCAACAATTGCAGCCCAAGAGGCAGCTCAAGCATAAGCCTTTTCAGCATCAATGGCTCAAGAAGATGGAGATCCTTCTCTGTTAAGGCCATGGCTTCCTCTTTTGGTTCTCGGCTCGAAGAGAGCGTGAAGAAGACGGTGGATGAGAACCCAGTTGTTGTCTATTCCAAAACGTGGTGTTCGTACTCCTCTGAGGTGAAATCGTTGTTCAAAAGGCTTGGTGTGGAGCCGATGGTCATTGAATTGGATGAACTTGGTCCCCAAGGGCCACAGCTGCAAAAGGTATTGGAGAGGCTTACAGGACAGCATACTGTCCCGAATGTTTTTATTGCGGGGAAACACATTGGTGGTTGTACAGATACTGTGAAGCTATACCGAAAAGGTGAACTTGAACCTTTGCTGTCAGAAGCTAAGGCTAAAAACGCACAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

179

Amino Acids

19.35

Weight (kDa)

9.51

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	2 cut(s)	287, 457
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	313, 344, 494
AleI	CACNNNNGTG	1 cut(s)	447
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	129, 376, 472, 512, 534
AluI	AGCT	5 cut(s)	129, 376, 472, 512, 534
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	189, 368
ApeKI	GCWGC	3 cut(s)	114, 126, 376
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	359, 368
AsuHPI	GGTGA	3 cut(s)	13, 310, 497
AvaII	GGWCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	126, 138, 363
BccI	CCATC	2 cut(s)	162, 328
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	3 cut(s)	115, 127, 377
BlsI	GCNGC	3 cut(s)	116, 128, 378
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	359, 368
BmiI	GGNNCC	2 cut(s)	330, 361
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	115, 145
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	192, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	192, 364
BseGI	GGATG	2 cut(s)	250, 355
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	126, 138, 363
BshFI	GGCC	2 cut(s)	191, 370
BslFI	GGGAC	2 cut(s)	345, 401
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	345, 401
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	191, 370
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	191, 370
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	330, 361
BspPI	GGATC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	192, 364
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	2 cut(s)	192, 364
Bst4CI	ACNGT	3 cut(s)	241, 415, 466
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	294, 513
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	250, 355
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 123, 132, 147, 156, 376, 524
BstV1I	GCAGC	3 cut(s)	126, 138, 363
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	191, 370
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	250, 355
Cac8I	GCNNGC	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	359, 368
Csp6I	GTAC	2 cut(s)	286, 456
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	2 cut(s)	286, 456
DdeI	CTNAG	2 cut(s)	294, 513
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	192, 364
Eco47I	GGWCC	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	192, 364
ErhI	CCWWGG	2 cut(s)	192, 364
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	137, 194, 411, 475
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	345, 401
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	115, 127, 377
FokI	GGATG	2 cut(s)	257, 362
Fsp4HI	GCNGC	3 cut(s)	115, 127, 377
FspBI	CTAG	1 cut(s)	535
GluI	GCNGC	3 cut(s)	115, 127, 377
HaeIII	GGCC	2 cut(s)	191, 370
Hin1II	CATG	1 cut(s)	196
HphI	GGTGA	3 cut(s)	13, 310, 497
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	2 cut(s)	295, 508
Hpy188III	TCNNGA	3 cut(s)	10, 162, 418
Hpy8I	GTNNAC	1 cut(s)	488
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	241, 415, 466
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	114, 379
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 123, 132, 147, 156, 376, 524
HpyF3I	CTNAG	2 cut(s)	294, 513
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	100, 328
LpnPI	CCDG	2 cut(s)	267, 387
Lsp1109I	GCAGC	3 cut(s)	126, 138, 363
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	535
MaeII	ACGT	1 cut(s)	275
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	5 cut(s)	57, 177, 233, 244, 247
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	4 cut(s)	25, 46, 109, 344
MnlI	CCTC	7 cut(s)	29, 91, 116, 211, 289, 301, 387
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	7 cut(s)	111, 123, 132, 147, 156, 376, 524
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	330, 361
NmeAIII	GCCGAG	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 281
PctI	GAATGC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	116, 128, 378
PspN4I	GGNNCC	2 cut(s)	330, 361
PspPI	GGNCC	2 cut(s)	359, 368
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	287, 457
RsaNI	GTAC	2 cut(s)	286, 456
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	115, 127, 377
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	2 cut(s)	359, 368
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	130, 160
SmoI	CTYRAG	2 cut(s)	130, 160
Sse9I	AATT	4 cut(s)	25, 46, 109, 344
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	192, 364
TaaI	ACNGT	3 cut(s)	241, 415, 466
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	11, 219
TasI	AATT	4 cut(s)	25, 46, 109, 344
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	3 cut(s)	114, 126, 376
TspDTI	ATGAA	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.