Rh6BG291000

Monothiol glutaredoxin-S12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013412
Physical Location & Seq
Reverse (-)
51603888 .. 51608291
4404 bp
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UTR
Exon/CDS
Intron
Rh6BG291000.1

Sequence Viewer

Length: 447 bp
ATGGCAGTCTCCTCTAATCTGACAAATTTCACATCCGTTTCTCTAAACTCTGCTCGCATTCTTTCTTCTACAAACCGGTCCTGCATTTGCTCCGTTCCTCCGAGCAACAATTACAGTTCTCGAAGCAGCTCAGGCATAAGTGCTTCCGGGATCAATGTCCGGAGACCCATGTCGGTTAAGTCTATGTCTTCTTCCTCGTTCGGTTCTCGGCTCGAAGAGAGCGTCAAGAAGACAGTGGAAGAGAACCCAGTTGTGGTCTATTCCAAAAGTTGGTGTTCGTACTCCGCTGAGGTGAAATCCTTGTTCAAAAGGCTTGGTGTGGAGCCAGCTGTGATTGAATTGGATGAACTAGGTGCCCAAGGACCACAGGTTCAGAAGGTATTGGAGAGGCTTACAGGACAACATACTGTCCCAAATGTTTTTATTGGTAAGCAATCCTCTTTGTAA

Protein Analysis

148

Amino Acids

15.91

Weight (kDa)

9.51

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 84 - 145 4.3e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28730 AT4G28730
fragaria_vesca FvH4_2g20100
malus_domestica MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica Prupe.8G210900_v2.0.a1
pyrus_communis pycom05g16950 pycom10g14880
rosa_chinensis RchiOBHm_Chr6g0285841
rosa_laevigata RLG00000012605
rosa_multiflora Rmu_sc0004321.1_g000007
rosa_roxburghii Rroxscaffold_7G00182660
rosa_rugosa Rorug06G0177200
rosa_samantha Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana Rw6G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 253, 270
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 307, 338
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 2 cut(s) 129, 329
AluI AGCT 2 cut(s) 129, 329
Alw26I GTCTC 2 cut(s) 13, 157
AlwI GGATC 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsiGI ACCGGT 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 78, 362
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 2 cut(s) 78, 362
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 353
BbsI GAAGAC 2 cut(s) 180, 236
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 138
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 13, 157
BfaI CTAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 78, 362
BmgT120I GGNCC 2 cut(s) 78, 362
BmiI GGNNCC 2 cut(s) 324, 355
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 242
BoxI GACNNNNGTC 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 180, 236
Bpu10I CCTNAGC 2 cut(s) 130, 288
BpuMI CCSGG 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 2 cut(s) 75, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 270
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 2 cut(s) 253, 270
BseMII CTCAG 2 cut(s) 144, 279
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 3 cut(s) 76, 147, 160
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 253, 270
BsmAI GTCTC 2 cut(s) 13, 157
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 358
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 143, 280
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 324, 355
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 116, 235, 409
Bst6I CTCTTC 2 cut(s) 210, 234
BstC8I GCNNGC 2 cut(s) 55, 327
BstDEI CTNAG 2 cut(s) 130, 288
BstF5I GGATG 2 cut(s) 32, 349
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 13, 157
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstPAI GACNNNNGTC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 2 cut(s) 180, 236
BtsCI GGATG 2 cut(s) 32, 349
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 55, 327
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 78, 362
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 1 cut(s) 169
CviJI RGCY 6 cut(s) 129, 211, 313, 325, 329, 391
CviKI_1 RGCY 6 cut(s) 129, 211, 313, 325, 329, 391
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 130, 288
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 210, 234
EarI CTCTTC 2 cut(s) 210, 234
Eco130I CCWWGG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 78, 362
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 137, 170, 185, 405
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 19, 356
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 127
HapII CCGG 3 cut(s) 76, 147, 160
HgaI GACGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 172
HpaII CCGG 3 cut(s) 76, 147, 160
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 21, 102, 375
Hpy188III TCNNGA 3 cut(s) 120, 160, 226
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 3 cut(s) 116, 235, 409
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 130, 288
Hsp92II CATG 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 95, 322
LpnPI CCDG 9 cut(s) 89, 94, 117, 160, 173, 261, 339, 353, 381
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 1 cut(s) 350
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 6 cut(s) 57, 180, 183, 227, 241, 251
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 3 cut(s) 25, 109, 338
MnlI CCTC 5 cut(s) 22, 108, 205, 283, 381
MroI TCCGGA 1 cut(s) 159
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 2 cut(s) 287, 329
MspI CCGG 3 cut(s) 76, 147, 160
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 148
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 324, 355
NmeAIII GCCGAG 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 324, 355
PspPI GGNCC 2 cut(s) 78, 362
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 78, 362
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 358
SetI ASST 6 cut(s) 131, 294, 331, 355, 372, 381
SinI GGWCC 2 cut(s) 78, 362
Sse9I AATT 3 cut(s) 25, 109, 338
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 116, 235, 409
TaqI TCGA 2 cut(s) 121, 213
TasI AATT 3 cut(s) 25, 109, 338
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 2 cut(s) 25, 82
TspRI CASTG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 78, 362
XapI RAATTY 1 cut(s) 25
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.