Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

27959319 .. 27960010

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGCTACCTTCATGAAGTCTTGAAGAAGTGTAAGATGGTGAATATGGTTGCCTTTGTCGATCCTGATCAGACTGGTACACTTGGGTGTGGAAATCCCACTGAAAGGGCTCGGTCTTTGTCAGATCGATATAAGCAAGGGAGGTTAGGGCAAATCTTTGTGGTTCCATATAACTCAGGTGCTCATTGGATGTTGACGGTTGTGAACCCAAATGAAGAAGTCGTGCACTTCATGGATCCACTTAAAAGGCGATTCGATACTGGGGAATGGAAATCTATTGTCAACAACTCAATTAAAATCTATAATGCTCACAAGAATCGGAAAGGAAGGAAAGTAATTCAATGGAAGAATCTTGCTGTGAGTCGGTTGAACTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

126

Amino Acids

14.61

Weight (kDa)

9.96

Isoelectric Point (pI)

22.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	56, 230, 243
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	25, 341, 370
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	2 cut(s)	184, 228
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	3 cut(s)	56, 230, 243
ApaLI	GTGCAC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	184, 228
BccI	CCATC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	67
BfaI	CTAG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	165, 237
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	79, 265
Bse8I	GATNNNNATC	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	127
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	79, 265
BseSI	GKGCMC	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	184, 228
BslI	CCNNNNNNNGG	1 cut(s)	105
Bsp1286I	GDGCHC	3 cut(s)	112, 184, 228
Bsp143I	GATC	4 cut(s)	61, 67, 124, 235
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	165, 237
BspPI	GGATC	3 cut(s)	56, 230, 243
BsrI	ACTGG	2 cut(s)	79, 265
BssMI	GATC	4 cut(s)	61, 67, 124, 235
Bst4CI	ACNGT	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	4 cut(s)	64, 70, 127, 238
BstMBI	GATC	4 cut(s)	61, 67, 124, 235
BstSLI	GKGCMC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	99
CciI	TCATGA	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	14, 232
CviJI	RGCY	2 cut(s)	6, 110
CviKI_1	RGCY	2 cut(s)	6, 110
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	4 cut(s)	63, 69, 126, 237
DpnII	GATC	4 cut(s)	61, 67, 124, 235
Eco24I	GRGCYC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	2 cut(s)	17, 235
FaiI	YATR	7 cut(s)	15, 47, 132, 169, 171, 233, 303
FatI	CATG	2 cut(s)	13, 231
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	379
Hin1II	CATG	2 cut(s)	17, 235
HincII	GTYRAC	2 cut(s)	195, 283
HindII	GTYRAC	2 cut(s)	195, 283
HinfI	GANTC	4 cut(s)	252, 316, 349, 361
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	5 cut(s)	80, 195, 205, 226, 283
Hpy188I	TCNGA	3 cut(s)	72, 124, 321
Hpy188III	TCNNGA	3 cut(s)	14, 22, 65
Hpy8I	GTNNAC	5 cut(s)	80, 195, 205, 226, 283
HpyAV	CCTTC	2 cut(s)	20, 321
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	17, 235
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	61, 67, 124, 235
LpnPI	CCDG	4 cut(s)	60, 78, 162, 246
MaeI	CTAG	1 cut(s)	379
MalI	GATC	4 cut(s)	63, 69, 126, 237
MboI	GATC	4 cut(s)	61, 67, 124, 235
MboII	GAAGA	3 cut(s)	37, 227, 358
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	3 cut(s)	112, 184, 228
MluCI	AATT	2 cut(s)	291, 336
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	2 cut(s)	243, 294
MslI	CAYNNNNRTG	1 cut(s)	85
NdeII	GATC	4 cut(s)	61, 67, 124, 235
NlaIII	CATG	2 cut(s)	17, 235
NlaIV	GGNNCC	2 cut(s)	165, 237
OliI	CACNNNNGTG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	252, 316, 349
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	165, 237
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	243, 294
Sau3AI	GATC	4 cut(s)	61, 67, 124, 235
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	112, 184, 228
SetI	ASST	4 cut(s)	8, 12, 146, 181
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	291, 336
SspMI	CTAG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	60, 127, 255
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	291, 336
TfiI	GAWTC	3 cut(s)	252, 316, 349
Tru1I	TTAA	2 cut(s)	243, 294
Tru9I	TTAA	2 cut(s)	243, 294
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	30, 220, 228
TspRI	CASTG	1 cut(s)	106
VneI	GTGCAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.