Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

18238456 .. 18241767

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTCTGCCTCTGTGGCTTGTGTTCTCCTCAGTCCAACTGCCAAAAGCCTCAAACCAACGGCAGCGGAGGAAGCAAGCAAAGTGAGATAGGCCAAAAAGCCAAGCAAAAAGCTCCGAGAAAGCCGGAAGCCACCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGCAACAACAGCAATGGCAGTCTCATATAATCTCACCAATTTCGCATCCGTTTCTCTAAATTCCCCTCGCATTCTTTCGTCTGCAAACAAGTCATCCAGTTTCTGTGTTCCTTTCAACAACAGTTACAGTTCGGGAGGTAGCTCGAGCACCAACCTTTCCAGCGTCCATGGCGGCTCGAGACGATGGAGACCCATGTCGGTTCAGGCCATGGCGTCCTCCTCCTTCGGTTCCCGGCTCGAAGAGAGCGTTAAGAAGACGGTGGATGAGAACCCTGTTGTCGTCTATTCCAAAACTTGGTGTTCGTACTCATCTGAGGTGAAATCGTTATTCAAAAGGCTTGGTGTGGAGCCGATCGTGATTGAATTGGATGAACTGGGTCCCCAAGGACCACAGCTGCAAAAGGTATTGGAGAGGCTTACAGGACAACATACTGTCCCTAATGTTTTTATCGGTGGGAAACACATTGGGGGTTGTACAGATACTGTGAAGTTATACCGAAAAGGTGAACTTGAAACTTTGCTCTCAGAAGCGAGTGCTAAAAATACACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

242

Amino Acids

26.16

Weight (kDa)

9.27

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	465
AciI	CCGC	2 cut(s)	66, 342
AcsI	RAATTY	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	476, 646
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	4 cut(s)	286, 502, 533, 683
AluBI	AGCT	4 cut(s)	113, 312, 565, 723
AluI	AGCT	4 cut(s)	113, 312, 565, 723
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	4 cut(s)	161, 196, 343, 352
AlwNI	CAGNNNCTG	2 cut(s)	273, 653
Ama87I	CYCGRG	2 cut(s)	313, 346
AoxI	GGCC	2 cut(s)	91, 375
ApeKI	GCWGC	2 cut(s)	63, 565
ApoI	RAATTY	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	548, 557
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	196, 499, 686
AvaI	CYCGRG	2 cut(s)	313, 346
AvaII	GGWCC	2 cut(s)	548, 557
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	75, 552
BccI	CCATC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	4 cut(s)	161, 196, 343, 352
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	64, 343, 566
BlsI	GCNGC	3 cut(s)	65, 344, 567
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	548, 557
BmeT110I	CYCGRG	2 cut(s)	313, 346
BmgT120I	GGNCC	2 cut(s)	548, 557
BmiI	GGNNCC	4 cut(s)	400, 519, 549, 550
BmrFI	CCNGG	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	554
BoxI	GACNNNNGTC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	337, 378, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	267, 549
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	337, 378, 553
BseGI	GGATG	4 cut(s)	215, 263, 439, 544
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	44, 474, 708
BseNI	ACTGG	2 cut(s)	267, 549
BseRI	GAGGAG	2 cut(s)	18, 379
BseXI	GCAGC	2 cut(s)	75, 552
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	93, 377
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	2 cut(s)	313, 346
BsiSI	CCGG	2 cut(s)	125, 403
BslFI	GGGAC	2 cut(s)	534, 590
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	4 cut(s)	161, 196, 343, 352
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	534, 590
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	93, 377
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	313, 346
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	644
Bsp143I	GATC	1 cut(s)	522
Bsp19I	CCATGG	2 cut(s)	337, 378
BspACI	CCGC	2 cut(s)	66, 342
BspANI	GGCC	2 cut(s)	93, 377
BspCNI	CTCAG	3 cut(s)	43, 475, 707
BspLI	GGNNCC	4 cut(s)	400, 519, 549, 550
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	267, 549
BssECI	CCNNGG	3 cut(s)	337, 378, 553
BssMI	GATC	1 cut(s)	522
BssNI	GRCGYC	1 cut(s)	383
BssT1I	CCWWGG	3 cut(s)	337, 378, 553
Bst4CI	ACNGT	5 cut(s)	293, 299, 430, 604, 655
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	30, 483, 694
BstDSI	CCRYGG	2 cut(s)	337, 378
BstF5I	GGATG	4 cut(s)	215, 263, 439, 544
BstKTI	GATC	1 cut(s)	525
BstMAI	GTCTC	4 cut(s)	161, 196, 343, 352
BstMBI	GATC	1 cut(s)	522
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 72, 179, 339
BstPAI	GACNNNNGTC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	75, 552
BstV2I	GAAGAC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	93, 377
BtgI	CCRYGG	2 cut(s)	337, 378
BtsCI	GGATG	4 cut(s)	215, 263, 439, 544
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	2 cut(s)	273, 653
Cfr13I	GGNCC	2 cut(s)	548, 557
CseI	GACGC	2 cut(s)	322, 372
Csp6I	GTAC	2 cut(s)	475, 645
CviAII	CATG	3 cut(s)	338, 364, 379
CviQI	GTAC	2 cut(s)	475, 645
DdeI	CTNAG	3 cut(s)	30, 483, 694
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	3 cut(s)	337, 378, 553
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	548, 557
Eco88I	CYCGRG	2 cut(s)	313, 346
EcoO109I	RGGNCCY	1 cut(s)	548
EcoT14I	CCWWGG	3 cut(s)	337, 378, 553
ErhI	CCWWGG	3 cut(s)	337, 378, 553
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	3 cut(s)	341, 367, 382
FaiI	YATR	7 cut(s)	196, 198, 339, 365, 380, 600, 664
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	534, 590
FatI	CATG	3 cut(s)	337, 363, 378
Fnu4HI	GCNGC	3 cut(s)	64, 343, 566
FokI	GGATG	4 cut(s)	202, 250, 446, 551
Fsp4HI	GCNGC	3 cut(s)	64, 343, 566
GluI	GCNGC	3 cut(s)	64, 343, 566
HaeIII	GGCC	2 cut(s)	93, 377
HapII	CCGG	2 cut(s)	125, 403
HgaI	GACGC	2 cut(s)	322, 372
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	3 cut(s)	341, 367, 382
HpaII	CCGG	2 cut(s)	125, 403
HphI	GGTGA	3 cut(s)	196, 499, 686
Hpy166II	GTNNAC	1 cut(s)	677
Hpy188I	TCNGA	3 cut(s)	117, 484, 697
Hpy188III	TCNNGA	3 cut(s)	303, 348, 526
Hpy8I	GTNNAC	1 cut(s)	677
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	5 cut(s)	293, 299, 430, 604, 655
HpyCH4V	TGCA	2 cut(s)	254, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 72, 179, 339
HpyF3I	CTNAG	3 cut(s)	30, 483, 694
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	3 cut(s)	341, 367, 382
KflI	GGGWCCC	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	522
LmnI	GCTCC	2 cut(s)	118, 517
LpnPI	CCDG	8 cut(s)	138, 280, 343, 359, 416, 456, 530, 576
Lsp1109I	GCAGC	2 cut(s)	75, 552
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	524
MboI	GATC	1 cut(s)	522
MboII	GAAGA	2 cut(s)	422, 436
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	208, 229, 533
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	66, 565
MspI	CCGG	2 cut(s)	125, 403
MspR9I	CCNGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	15, 72, 179, 339
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	2 cut(s)	337, 378
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	3 cut(s)	341, 367, 382
NlaIV	GGNNCC	4 cut(s)	400, 519, 549, 550
PaeR7I	CTCGAG	2 cut(s)	313, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PctI	GAATGC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	65, 344, 567
Ple19I	CGATCG	1 cut(s)	525
PpuMI	RGGWCCY	1 cut(s)	548
PshAI	GACNNNNGTC	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	548
PspN4I	GGNNCC	4 cut(s)	400, 519, 549, 550
PspPI	GGNCC	2 cut(s)	548, 557
PspPPI	RGGWCCY	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	313
PstNI	CAGNNNCTG	2 cut(s)	273, 653
PvuI	CGATCG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	2 cut(s)	476, 646
RsaNI	GTAC	2 cut(s)	475, 645
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	64, 343, 566
Sau3AI	GATC	1 cut(s)	522
Sau96I	GGNCC	2 cut(s)	548, 557
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	9 cut(s)	115, 310, 314, 327, 489, 567, 576, 676, 725
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	2 cut(s)	313, 346
SinI	GGWCC	2 cut(s)	548, 557
SlaI	CTCGAG	2 cut(s)	313, 346
SmlI	CTYRAG	2 cut(s)	313, 346
SmoI	CTYRAG	2 cut(s)	313, 346
Sse9I	AATT	3 cut(s)	208, 229, 533
SsiI	CCGC	2 cut(s)	66, 342
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	3 cut(s)	337, 378, 553
TaaI	ACNGT	5 cut(s)	293, 299, 430, 604, 655
TaqI	TCGA	3 cut(s)	314, 347, 408
TasI	AATT	3 cut(s)	208, 229, 533
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseI	GCWGC	2 cut(s)	63, 565
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	465
VpaK11BI	GGWCC	2 cut(s)	548, 557
XapI	RAATTY	1 cut(s)	229
XhoI	CTCGAG	2 cut(s)	313, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.