Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

16894867 .. 16897329

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAGTCTCGTCCAATCTCACAAGTTTCACATCCCTTTCTCTCAGTTCCGCTCGCATTCTGTCTTCCACAAACCGGTCCTGCATTTGCTCCGTTCCTCTGACCAACAATCACATAAGCATAAGCACTTACAGGATCAATGTCAGAAGACCCATCTCGGTTAAGTCTATGTCTTCTTCCTCCTTCGGTTCTCGCCTCGAAGAGAGCGTCAAGAAGACGGTCGATGACAACCCAGTTGTGGTCTATTCCAAAACTTGGTGTTCGTACTCCTCTGAGGTGAAATCCTTGTTTAAAAGGCTTGGTGTGGAGCCAACCGTGATTGAATTGGATGAACTAGGTGCCCAAGGACCACAGTTGCAGAAGGTATTAGAGAGGCTTACAGGACAACATACTGTCCCAAATGTTTTTATTGGGGGGAAACACATCGGAGGTTGTACAGATACTGTGAAGCTACACCGAAAAGGTGAACTTGAACCTTTGCTCGCAGAAGCTAAATCCAAAAATACACAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

172

Amino Acids

18.66

Weight (kDa)

9.41

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	79 - 142	3.2e-17	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	266, 436
AfiI	CCNNNNNNNGG	3 cut(s)	75, 238, 255
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	323, 473
AluBI	AGCT	2 cut(s)	451, 491
AluI	AGCT	2 cut(s)	451, 491
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsiGI	ACCGGT	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	78, 347
AsuHPI	GGTGA	2 cut(s)	289, 476
AvaII	GGWCC	2 cut(s)	78, 347
BaeGI	GKGCMC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	4 cut(s)	57, 154, 165, 221
BccI	CCATC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	78, 347
BmgT120I	GGNCC	2 cut(s)	78, 347
BmiI	GGNNCC	2 cut(s)	309, 340
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	4 cut(s)	57, 154, 165, 221
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 238, 255
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	32, 334
BseLI	CCNNNNNNNGG	3 cut(s)	75, 238, 255
BseMII	CTCAG	2 cut(s)	58, 264
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	75, 238, 255
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	57, 265
BspLI	GGNNCC	2 cut(s)	309, 340
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	5 cut(s)	220, 316, 354, 394, 445
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	55, 483
BstDEI	CTNAG	2 cut(s)	44, 273
BstF5I	GGATG	2 cut(s)	32, 334
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	135
BstMCI	CGRYCG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	343
BstV2I	GAAGAC	4 cut(s)	57, 154, 165, 221
BtsCI	GGATG	2 cut(s)	32, 334
Cac8I	GCNNGC	2 cut(s)	55, 483
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	78, 347
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	265, 435
CspAI	ACCGGT	1 cut(s)	75
CviJI	RGCY	5 cut(s)	298, 310, 376, 451, 491
CviKI_1	RGCY	5 cut(s)	298, 310, 376, 451, 491
CviQI	GTAC	2 cut(s)	265, 435
DdeI	CTNAG	2 cut(s)	44, 273
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	78, 347
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	5 cut(s)	116, 122, 170, 390, 514
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	380
FokI	GGATG	2 cut(s)	19, 341
FspBI	CTAG	1 cut(s)	335
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	2 cut(s)	289, 476
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	4 cut(s)	102, 146, 274, 428
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	193, 355
HpyCH4III	ACNGT	5 cut(s)	220, 316, 354, 394, 445
HpyCH4V	TGCA	2 cut(s)	84, 358
HpyF3I	CTNAG	2 cut(s)	44, 273
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	95, 307
LpnPI	CCDG	5 cut(s)	89, 94, 118, 246, 366
MaeI	CTAG	1 cut(s)	335
MalI	GATC	1 cut(s)	137
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	57, 159, 165, 168, 212, 226
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	1 cut(s)	323
MnlI	CCTC	7 cut(s)	108, 190, 206, 268, 280, 366, 422
MseI	TTAA	2 cut(s)	162, 291
MspI	CCGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	135
NlaIV	GGNNCC	2 cut(s)	309, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	255
PinAI	ACCGGT	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	309, 340
PspPI	GGNCC	2 cut(s)	78, 347
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	266, 436
RsaNI	GTAC	2 cut(s)	265, 435
SaqAI	TTAA	2 cut(s)	162, 291
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	78, 347
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	8 cut(s)	279, 340, 366, 433, 453, 466, 478, 493
SinI	GGWCC	2 cut(s)	78, 347
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	5 cut(s)	220, 316, 354, 394, 445
TaqI	TCGA	2 cut(s)	198, 222
TasI	AATT	1 cut(s)	323
TatI	WGTACW	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	162, 291
Tru9I	TTAA	2 cut(s)	162, 291
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	78, 347
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.