Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004321.1

Orthogroup ID

OG0013412

Physical Location & Seq

Genomic Coordinates Reverse (-)

11582 .. 14512

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004321.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggcagtctcctctaacctgacaaatttcacatccgtttctctaaactctgctcgcattctttcttctacaaaccggtcctgcatttgctctgttcctctgagcaacaattacagttctcgaagcagctcaggcataagtgcttccgggatcaatgtccggagacccatgtcggttaagtctatgtcttcttcctcgttcggttctcggctcgaagagagcgtcaagaagacagtggaagagaacccagttgtggtctattccaaaagttggtgttcttctcgacgcagctcaggcataagtgcttccgggatcaatgtccggagacccatgtcggttaagtctatgtcttcttcctcgttcggttctcggctcgaagagagcgtcaagaagacagtggaagagaacccagttgtggtctattccaaaagttggtgttcgtactccgctgaggtgaaatccttgttcaaaaggcttggtgtggagccagctgtgattgaattggatgaactaggtgcccaaggaccacaggttcagaaggtattggagaggcttacaggacaacatactgtcccaaatgtttttattggggggaaacacattggaggttgtacagatactgtgaagctacaccgaaaaggtgaacttgaacctttgctggcagaagctaaatccaaaaacacacaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0015036 GO:0015037 GO:0015038 GO:0016043 GO:0016209 GO:0016226 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022607 GO:0031163 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

14-3-3 Glutaredoxin

Protein Analysis

230

Amino Acids

24.79

Weight (kDa)

9.71

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28730 AT4G28730
fragaria_vesca	FvH4_2g20100
malus_domestica	MD05G1184700.v1.1 MD10G1172500.v1.1
prunus_persica	Prupe.8G210900_v2.0.a1
pyrus_communis	pycom05g16950 pycom10g14880
rosa_chinensis	RchiOBHm_Chr6g0285841
rosa_laevigata	RLG00000012605
rosa_multiflora	Rmu_sc0004321.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182660
rosa_rugosa	Rorug06G0177200
rosa_samantha	Rh6AG289000 Rh6BG291000 Rh6CG291900 Rh6DG283900
rosa_wichuraiana	Rw6G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	2 cut(s)	270, 432
AccIII	TCCGGA	2 cut(s)	159, 321
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	158, 320
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	2 cut(s)	443, 613
AfiI	CCNNNNNNNGG	4 cut(s)	253, 270, 415, 432
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	469, 500, 650
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	5 cut(s)	129, 291, 491, 628, 668
AluI	AGCT	5 cut(s)	129, 291, 491, 628, 668
Alw26I	GTCTC	3 cut(s)	13, 157, 319
AlwI	GGATC	2 cut(s)	158, 320
AlwNI	CAGNNNCTG	1 cut(s)	620
Aor13HI	TCCGGA	2 cut(s)	159, 321
ApeKI	GCWGC	2 cut(s)	126, 288
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	4 cut(s)	207, 239, 369, 401
AsiGI	ACCGGT	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	78, 524
AsuC2I	CCSGG	2 cut(s)	148, 310
AsuHPI	GGTGA	2 cut(s)	466, 653
AvaII	GGWCC	2 cut(s)	78, 524
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	515
BbsI	GAAGAC	4 cut(s)	180, 236, 342, 398
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	138, 300
BcnI	CCSGG	2 cut(s)	148, 310
BcoDI	GTCTC	3 cut(s)	13, 157, 319
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	2 cut(s)	127, 289
BlsI	GCNGC	2 cut(s)	128, 290
Bme1390I	CCNGG	2 cut(s)	148, 310
Bme18I	GGWCC	2 cut(s)	78, 524
BmgT120I	GGNCC	2 cut(s)	78, 524
BmiI	GGNNCC	2 cut(s)	486, 517
BmrFI	CCNGG	2 cut(s)	148, 310
BmrI	ACTGGG	2 cut(s)	242, 404
BmuI	ACTGGG	2 cut(s)	242, 404
BoxI	GACNNNNGTC	2 cut(s)	169, 331
BpiI	GAAGAC	4 cut(s)	180, 236, 342, 398
Bpu10I	CCTNAGC	3 cut(s)	130, 292, 450
BpuMI	CCSGG	2 cut(s)	148, 310
BsaI	GGTCTC	2 cut(s)	157, 319
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	3 cut(s)	75, 159, 321
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 270, 415, 432
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	248, 410
BseAI	TCCGGA	2 cut(s)	159, 321
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	32, 511
BseLI	CCNNNNNNNGG	4 cut(s)	253, 270, 415, 432
BseMII	CTCAG	4 cut(s)	92, 144, 306, 441
BseNI	ACTGG	2 cut(s)	248, 410
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	138, 300
BshNI	GGYRCC	1 cut(s)	515
BshTI	ACCGGT	1 cut(s)	75
BsiSI	CCGG	5 cut(s)	76, 147, 160, 309, 322
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	4 cut(s)	253, 270, 415, 432
BsmAI	GTCTC	3 cut(s)	13, 157, 319
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	57
Bso31I	GGTCTC	2 cut(s)	157, 319
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp13I	TCCGGA	2 cut(s)	159, 321
Bsp1407I	TGTACA	1 cut(s)	611
Bsp143I	GATC	2 cut(s)	150, 312
BspACI	CCGC	1 cut(s)	447
BspCNI	CTCAG	4 cut(s)	93, 143, 305, 442
BspEI	TCCGGA	2 cut(s)	159, 321
BspLI	GGNNCC	2 cut(s)	486, 517
BspPI	GGATC	2 cut(s)	158, 320
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	2 cut(s)	157, 319
BsrFI	RCCGGY	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	248, 410
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	150, 312
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	5 cut(s)	116, 235, 397, 571, 622
Bst6I	CTCTTC	4 cut(s)	210, 234, 372, 396
BstAUI	TGTACA	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	55, 489, 660
BstDEI	CTNAG	4 cut(s)	101, 130, 292, 450
BstF5I	GGATG	2 cut(s)	32, 511
BstKTI	GATC	2 cut(s)	153, 315
BstMAI	GTCTC	3 cut(s)	13, 157, 319
BstMBI	GATC	2 cut(s)	150, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 294
BstPAI	GACNNNNGTC	2 cut(s)	169, 331
BstSCI	CCNGG	2 cut(s)	146, 308
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	138, 300
BstV2I	GAAGAC	4 cut(s)	180, 236, 342, 398
BtsCI	GGATG	2 cut(s)	32, 511
BtsIMutI	CAGTG	2 cut(s)	240, 402
Cac8I	GCNNGC	3 cut(s)	55, 489, 660
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	78, 524
CseI	GACGC	3 cut(s)	211, 294, 373
Csp6I	GTAC	2 cut(s)	442, 612
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	2 cut(s)	169, 331
CviQI	GTAC	2 cut(s)	442, 612
DdeI	CTNAG	4 cut(s)	101, 130, 292, 450
DpnI	GATC	2 cut(s)	152, 314
DpnII	GATC	2 cut(s)	150, 312
Eam1104I	CTCTTC	4 cut(s)	210, 234, 372, 396
EarI	CTCTTC	4 cut(s)	210, 234, 372, 396
Eco130I	CCWWGG	1 cut(s)	520
Eco31I	GGTCTC	2 cut(s)	157, 319
Eco47I	GGWCC	2 cut(s)	78, 524
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	2 cut(s)	172, 334
FaiI	YATR	8 cut(s)	137, 170, 185, 299, 332, 347, 567, 691
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	168, 330
Fnu4HI	GCNGC	2 cut(s)	127, 289
FokI	GGATG	2 cut(s)	19, 518
Fsp4HI	GCNGC	2 cut(s)	127, 289
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	2 cut(s)	127, 289
HapII	CCGG	5 cut(s)	76, 147, 160, 309, 322
HgaI	GACGC	3 cut(s)	211, 294, 373
Hin1II	CATG	2 cut(s)	172, 334
HpaII	CCGG	5 cut(s)	76, 147, 160, 309, 322
HphI	GGTGA	2 cut(s)	466, 653
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	2 cut(s)	102, 537
Hpy188III	TCNNGA	6 cut(s)	120, 160, 226, 282, 322, 388
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	5 cut(s)	116, 235, 397, 571, 622
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 294
HpyF3I	CTNAG	4 cut(s)	101, 130, 292, 450
Hsp92II	CATG	2 cut(s)	172, 334
Kpn2I	TCCGGA	2 cut(s)	159, 321
Kzo9I	GATC	2 cut(s)	150, 312
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	2 cut(s)	138, 300
MaeI	CTAG	1 cut(s)	512
MalI	GATC	2 cut(s)	152, 314
MboI	GATC	2 cut(s)	150, 312
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	3 cut(s)	25, 109, 500
MnlI	CCTC	7 cut(s)	22, 108, 205, 367, 445, 543, 599
MroI	TCCGGA	2 cut(s)	159, 321
MseI	TTAA	2 cut(s)	177, 339
MspA1I	CMGCKG	2 cut(s)	449, 491
MspI	CCGG	5 cut(s)	76, 147, 160, 309, 322
MspR9I	CCNGG	2 cut(s)	148, 310
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	132, 294
NciI	CCSGG	2 cut(s)	148, 310
NdeII	GATC	2 cut(s)	150, 312
NlaIII	CATG	2 cut(s)	172, 334
NlaIV	GGNNCC	2 cut(s)	486, 517
NmeAIII	GCCGAG	2 cut(s)	187, 349
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 381
PctI	GAATGC	1 cut(s)	57
PflMI	CCANNNNNTGG	2 cut(s)	270, 432
PfoI	TCCNGGA	2 cut(s)	146, 308
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	128, 290
PshAI	GACNNNNGTC	2 cut(s)	169, 331
PspN4I	GGNNCC	2 cut(s)	486, 517
PspPI	GGNCC	2 cut(s)	78, 524
PstNI	CAGNNNCTG	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	443, 613
RsaNI	GTAC	2 cut(s)	442, 612
SaqAI	TTAA	2 cut(s)	177, 339
SatI	GCNGC	2 cut(s)	127, 289
Sau3AI	GATC	2 cut(s)	150, 312
Sau96I	GGNCC	2 cut(s)	78, 524
ScrFI	CCNGG	2 cut(s)	148, 310
SduI	GDGCHC	1 cut(s)	520
SinI	GGWCC	2 cut(s)	78, 524
Sse9I	AATT	3 cut(s)	25, 109, 500
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	146, 308
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	5 cut(s)	116, 235, 397, 571, 622
TaqI	TCGA	4 cut(s)	121, 213, 283, 375
TasI	AATT	3 cut(s)	25, 109, 500
TatI	WGTACW	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	177, 339
Tru9I	TTAA	2 cut(s)	177, 339
TscAI	CASTG	2 cut(s)	240, 402
TseI	GCWGC	2 cut(s)	126, 288
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	240, 402
Van91I	CCANNNNNTGG	2 cut(s)	270, 432
VpaK11BI	GGWCC	2 cut(s)	78, 524
XapI	RAATTY	1 cut(s)	25
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.