AT4G28860
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14246260 .. 14249872
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28860.1

Sequence Viewer

Length: 1245 bp
ATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCGGTGGTTCCTTTGGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTGTTAAGATCGAGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCTAAGCTATATAGAACTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAGATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGCTAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATAACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGGCCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGACGGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAACTCCTATTGAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTAATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAATATGAACATGCCATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGGGAAATGA

Protein Analysis

414

Amino Acids

46.71

Weight (kDa)

9.59

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 227 8.1e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 265 1.8e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 119 - 206 2.3e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
Acc65I GGTACC 1 cut(s) 1142
AccB1I GGYRCC 1 cut(s) 1142
AccB7I CCANNNNNTGG 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 1194
AccI GTMKAC 2 cut(s) 282, 574
AccII CGCG 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 5 cut(s) 192, 296, 514, 681, 1177
AdeI CACNNNGTG 1 cut(s) 736
AfaI GTAC 4 cut(s) 26, 357, 614, 1144
AfiI CCNNNNNNNGG 7 cut(s) 502, 641, 736, 797, 927, 1068, 1212
AflII CTTAAG 2 cut(s) 619, 647
AgsI TTSAA 2 cut(s) 179, 808
AhdI GACNNNNNGTC 1 cut(s) 589
AjnI CCWGG 1 cut(s) 925
AluBI AGCT 6 cut(s) 31, 77, 107, 145, 158, 163
AluI AGCT 6 cut(s) 31, 77, 107, 145, 158, 163
Alw26I GTCTC 4 cut(s) 269, 597, 918, 1012
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 4 cut(s) 409, 415, 456, 918
ApoI RAATTY 5 cut(s) 192, 296, 514, 681, 1177
AseI ATTAAT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 298
Asp718I GGTACC 1 cut(s) 1142
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 257, 409, 1040
AsuC2I CCSGG 1 cut(s) 1236
AsuHPI GGTGA 3 cut(s) 294, 1212, 1224
AvaII GGWCC 2 cut(s) 257, 1040
AvrII CCTAGG 1 cut(s) 412
BalI TGGCCA 1 cut(s) 458
BanI GGYRCC 1 cut(s) 1142
BauI CACGAG 1 cut(s) 942
BbvCI CCTCAGC 1 cut(s) 141
BccI CCATC 4 cut(s) 201, 215, 238, 1123
BceAI ACGGC 1 cut(s) 905
BciT130I CCWGG 1 cut(s) 927
BclI TGATCA 3 cut(s) 328, 781, 1087
BcnI CCSGG 1 cut(s) 1236
BcoDI GTCTC 4 cut(s) 269, 597, 918, 1012
BfaI CTAG 6 cut(s) 74, 342, 413, 587, 903, 933
BfmI CTRYAG 1 cut(s) 1065
BfrI CTTAAG 2 cut(s) 619, 647
BglII AGATCT 1 cut(s) 271
BisI GCNGC 3 cut(s) 19, 418, 812
BlnI CCTAGG 1 cut(s) 412
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 3 cut(s) 20, 419, 813
Bme1390I CCNGG 2 cut(s) 927, 1236
Bme18I GGWCC 2 cut(s) 257, 1040
BmeRI GACNNNNNGTC 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 257, 409, 1040
BmiI GGNNCC 2 cut(s) 55, 1144
BmrFI CCNGG 2 cut(s) 927, 1236
BmsI GCATC 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 1236
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 412, 635, 735, 926, 1235
BsaXI ACNNNNNCTCC 2 cut(s) 1066, 1096
Bsc4I CCNNNNNNNGG 7 cut(s) 502, 641, 736, 797, 927, 1068, 1212
Bse118I RCCGGY 2 cut(s) 1024, 1205
Bse1I ACTGG 3 cut(s) 459, 872, 1035
BseBI CCWGG 1 cut(s) 927
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 412, 635, 735, 926, 1235
BseGI GGATG 4 cut(s) 136, 492, 586, 1118
BseLI CCNNNNNNNGG 7 cut(s) 502, 641, 736, 797, 927, 1068, 1212
BseMII CTCAG 2 cut(s) 155, 929
BseNI ACTGG 3 cut(s) 459, 872, 1035
BseRI GAGGAG 2 cut(s) 990, 1087
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 411, 417, 458, 920
BshNI GGYRCC 1 cut(s) 1142
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 3 cut(s) 1025, 1206, 1235
BslI CCNNNNNNNGG 7 cut(s) 502, 641, 736, 797, 927, 1068, 1212
BsmAI GTCTC 4 cut(s) 269, 597, 918, 1012
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 4 cut(s) 411, 417, 458, 920
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 114, 271, 328, 781, 1087
Bsp1720I GCTNAGC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 635
BspANI GGCC 4 cut(s) 411, 417, 458, 920
BspCNI CTCAG 2 cut(s) 154, 928
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 55, 1144
BspT107I GGYRCC 1 cut(s) 1142
BspTI CTTAAG 2 cut(s) 619, 647
BsrBI CCGCTC 1 cut(s) 1194
BsrFI RCCGGY 2 cut(s) 1024, 1205
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 3 cut(s) 459, 872, 1035
BssAI RCCGGY 2 cut(s) 1024, 1205
BssECI CCNNGG 5 cut(s) 412, 635, 735, 926, 1235
BssMI GATC 5 cut(s) 114, 271, 328, 781, 1087
BssSI CACGAG 1 cut(s) 942
BssT1I CCWWGG 2 cut(s) 412, 635
Bst2BI CACGAG 1 cut(s) 942
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 4 cut(s) 125, 287, 313, 1016
BstAFI CTTAAG 2 cut(s) 619, 647
BstAPI GCANNNNNTGC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 141, 159, 915, 984
BstDSI CCRYGG 2 cut(s) 635, 735
BstF5I GGATG 4 cut(s) 136, 492, 586, 1118
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 117, 274, 331, 784, 1090
BstMAI GTCTC 4 cut(s) 269, 597, 918, 1012
BstMBI GATC 5 cut(s) 114, 271, 328, 781, 1087
BstMWI GCNNNNNNNGC 2 cut(s) 417, 536
BstNI CCWGG 1 cut(s) 927
BstNSI RCATGY 1 cut(s) 1114
BstSCI CCNGG 2 cut(s) 925, 1234
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 4 cut(s) 411, 417, 458, 920
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 635, 735
BtsCI GGATG 4 cut(s) 136, 492, 586, 1118
BtsIMutI CAGTG 2 cut(s) 770, 1042
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 2 cut(s) 1024, 1205
Cfr13I GGNCC 3 cut(s) 257, 409, 1040
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 4 cut(s) 25, 356, 613, 1143
CviAII CATG 5 cut(s) 406, 636, 995, 1111, 1228
CviQI GTAC 4 cut(s) 25, 356, 613, 1143
DdeI CTNAG 4 cut(s) 141, 159, 915, 984
DpnI GATC 5 cut(s) 116, 273, 330, 783, 1089
DpnII GATC 5 cut(s) 114, 271, 328, 781, 1087
DraIII CACNNNGTG 1 cut(s) 736
DriI GACNNNNNGTC 1 cut(s) 589
EaeI YGGCCR 1 cut(s) 456
Eam1105I GACNNNNNGTC 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 412, 635
Eco32I GATATC 3 cut(s) 371, 467, 699
Eco47I GGWCC 2 cut(s) 257, 1040
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 925
EcoRV GATATC 3 cut(s) 371, 467, 699
EcoT14I CCWWGG 2 cut(s) 412, 635
ErhI CCWWGG 2 cut(s) 412, 635
FaeI CATG 5 cut(s) 409, 639, 998, 1114, 1231
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 5 cut(s) 405, 635, 994, 1110, 1227
FauI CCCGC 2 cut(s) 1132, 1187
FbaI TGATCA 3 cut(s) 328, 781, 1087
FblI GTMKAC 2 cut(s) 282, 574
Fnu4HI GCNGC 3 cut(s) 19, 418, 812
FokI GGATG 4 cut(s) 123, 479, 593, 1105
Fsp4HI GCNGC 3 cut(s) 19, 418, 812
FspBI CTAG 6 cut(s) 74, 342, 413, 587, 903, 933
GlaI GCGC 1 cut(s) 200
GluI GCNGC 3 cut(s) 19, 418, 812
HaeIII GGCC 4 cut(s) 411, 417, 458, 920
HapII CCGG 3 cut(s) 1025, 1206, 1235
HhaI GCGC 1 cut(s) 201
Hin1II CATG 5 cut(s) 409, 639, 998, 1114, 1231
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 4 cut(s) 427, 590, 801, 1075
HpaII CCGG 3 cut(s) 1025, 1206, 1235
HphI GGTGA 3 cut(s) 294, 1212, 1224
Hpy166II GTNNAC 4 cut(s) 283, 575, 658, 1096
Hpy188I TCNGA 4 cut(s) 35, 1012, 1022, 1163
Hpy188III TCNNGA 8 cut(s) 97, 118, 176, 266, 316, 470, 805, 821
Hpy8I GTNNAC 4 cut(s) 283, 575, 658, 1096
HpyAV CCTTC 4 cut(s) 103, 173, 641, 833
HpyCH4III ACNGT 4 cut(s) 125, 287, 313, 1016
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 376, 530, 539, 546, 723, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 417, 536
HpyF3I CTNAG 4 cut(s) 141, 159, 915, 984
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 5 cut(s) 409, 639, 998, 1114, 1231
HspAI GCGC 1 cut(s) 199
KpnI GGTACC 1 cut(s) 1146
Ksp22I TGATCA 3 cut(s) 328, 781, 1087
Kzo9I GATC 5 cut(s) 114, 271, 328, 781, 1087
LmnI GCTCC 1 cut(s) 1191
LweI GCATC 1 cut(s) 463
MaeI CTAG 6 cut(s) 74, 342, 413, 587, 903, 933
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 1230
MalI GATC 5 cut(s) 116, 273, 330, 783, 1089
MbiI CCGCTC 1 cut(s) 1194
MboI GATC 5 cut(s) 114, 271, 328, 781, 1087
MboII GAAGA 4 cut(s) 52, 281, 703, 706
MflI RGATCY 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 6 cut(s) 192, 296, 441, 514, 681, 1177
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 2 cut(s) 599, 1084
MmeI TCCRAC 1 cut(s) 1193
MnlI CCTC 9 cut(s) 150, 176, 617, 706, 968, 971, 1065, 1156, 1183
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 298
MscI TGGCCA 1 cut(s) 458
MseI TTAA 5 cut(s) 111, 518, 620, 648, 1056
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 1064
MspCI CTTAAG 2 cut(s) 619, 647
MspI CCGG 3 cut(s) 1025, 1206, 1235
MspR9I CCNGG 2 cut(s) 927, 1236
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 927
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 417, 536
NciI CCSGG 1 cut(s) 1236
NcoI CCATGG 1 cut(s) 635
NdeII GATC 5 cut(s) 114, 271, 328, 781, 1087
NlaIII CATG 5 cut(s) 409, 639, 998, 1114, 1231
NlaIV GGNNCC 2 cut(s) 55, 1144
NmuCI GTSAC 1 cut(s) 1230
NspI RCATGY 1 cut(s) 1114
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 427, 801
PflFI GACNNNGTC 1 cut(s) 1016
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 3 cut(s) 20, 419, 813
PleI GAGTC 2 cut(s) 598, 1083
PpsI GAGTC 2 cut(s) 598, 1083
PshBI ATTAAT 1 cut(s) 1056
PsiI TTATAA 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 925
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 55, 1144
PspPI GGNCC 3 cut(s) 257, 409, 1040
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 1016
RsaI GTAC 4 cut(s) 26, 357, 614, 1144
RsaNI GTAC 4 cut(s) 25, 356, 613, 1143
SaqAI TTAA 5 cut(s) 111, 518, 620, 648, 1056
SatI GCNGC 3 cut(s) 19, 418, 812
Sau3AI GATC 5 cut(s) 114, 271, 328, 781, 1087
Sau96I GGNCC 3 cut(s) 257, 409, 1040
SchI GAGTC 2 cut(s) 599, 1084
ScrFI CCNGG 2 cut(s) 927, 1236
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 257, 1040
SmlI CTYRAG 2 cut(s) 619, 647
SmoI CTYRAG 2 cut(s) 619, 647
Sse9I AATT 6 cut(s) 192, 296, 441, 514, 681, 1177
SspMI CTAG 6 cut(s) 74, 342, 413, 587, 903, 933
StyD4I CCNGG 2 cut(s) 925, 1234
StyI CCWWGG 2 cut(s) 412, 635
TaaI ACNGT 4 cut(s) 125, 287, 313, 1016
TaiI ACGT 1 cut(s) 10
TaqI TCGA 5 cut(s) 87, 96, 117, 267, 973
TaqII GACCGA 1 cut(s) 245
TasI AATT 6 cut(s) 192, 296, 441, 514, 681, 1177
TatI WGTACW 3 cut(s) 24, 355, 612
TauI GCSGC 3 cut(s) 21, 420, 814
TfiI GAWTC 2 cut(s) 427, 801
Tru1I TTAA 5 cut(s) 111, 518, 620, 648, 1056
Tru9I TTAA 5 cut(s) 111, 518, 620, 648, 1056
TscAI CASTG 2 cut(s) 777, 1042
TseFI GTSAC 1 cut(s) 1230
Tsp45I GTSAC 1 cut(s) 1230
TspDTI ATGAA 7 cut(s) 168, 738, 746, 1011, 1116, 1121, 1216
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 777, 1042
Tth111I GACNNNGTC 1 cut(s) 1016
Van91I CCANNNNNTGG 1 cut(s) 736
Vha464I CTTAAG 2 cut(s) 619, 647
VpaK11BI GGWCC 2 cut(s) 257, 1040
VspI ATTAAT 1 cut(s) 1056
XapI RAATTY 5 cut(s) 192, 296, 514, 681, 1177
XceI RCATGY 1 cut(s) 1114
XmaJI CCTAGG 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 282, 574
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 6 cut(s) 74, 342, 413, 587, 903, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.