Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007576

Physical Location & Seq

Genomic Coordinates Forward (+)

1397896 .. 1398954

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0016700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCTTATCTGGGTATTTGAAAGTAGCAACACTAAGCAATACATTGAGTGGGGCAGACTCCTATCCAAACAATGAGGAGACAAATCATGAAACAAAACCTAGCAAGCGGAAGAAAAGGAAGTCCATGGTTTGGGAGCACTTCACCATAGAAACTGTGAGTGCTGGGTGTAGAAGGGCATACTGCAACCAATGCAAGCGAAGCTATGCATATAGTAAAGGCTCAAAAGTTTATTCAGGGCATAGCTGCACGCGTCTGCCTTTCTTGGACGTGTGGACTTCCTCTCAAGGGGTGGGGTATGTGTCTGTTAGCCATGCTGTTAAGCTTCATCTTCCCTTCAATGGTCAACTATTGAAGAAAATCCGGGACAGCATCAAGTACGTGACGACTTCATGGTCCCATGATGAAAAGTTTCTTGTTCTTAAGAAACAGCTTCAAGTCCCAAGTGAAAGGACCATATTTGTTGATAAGCAAACTCGGTGGAATACCGCATATCAAATGTTGGTGGCTGCTTCGGAGTTGAAGCAAGTTTTTTCTTGCTTGGATACATATGATGCCGAATTCAACAAACAAGTCCCCTCAATGGAAGATTGGAAGCAAGTGTCAAGGATTGAGGGACATCTGTCTGGAGGTATCACCAATGAGGAACCCCTTGTTAGTAACCTTGCTCGAACAATGCTAGAAAAAATTAATAGGTACGGGAAGAATTGTAGCCTGACTTTGGCTACAGCAGTGGTCATGGATCCGAGCTCGGGGTACAAGATGAAGTATATTGAGTTCAGTTTCACCAGAATTTATAGGGAAGAAGAAGCTCCGACATGTATCAAGATGGTTGATGATCGAATCCACGAGCTATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

287

Amino Acids

32.94

Weight (kDa)

9.15

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	199 - 287	6.6e-19	hAT-like transposase, RNase-H fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28860 AT4G28860 AT4G28880 AT4G28880 AT4G28880 AT4G28880
fragaria_vesca	FvH4_1g05680 FvH4_1g05680
malus_domestica	MD02G1058000.v1.1 MD15G1192500.v1.1
prunus_persica	Prupe.7G224800_v2.0.a1 Prupe.7G224800_v2.0.a1
pyrus_communis	pycom02g04710 pycom15g17220
rosa_chinensis	RchiOBHm_Chr2g0091351
rosa_laevigata	RLG00000016214
rosa_multiflora	Rmu_sc0002270.1_g000051
rosa_roxburghii	Rroxscaffold_2G00150190
rosa_rugosa	Rorug02G0016600 Rorug02G0016700 Rorug02G0016800
rosa_samantha	Rh2AG061500 Rh2BG060900
rosa_wichuraiana	Rw2G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	394
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	109, 489
AclWI	GGATC	2 cut(s)	737, 750
AcsI	RAATTY	2 cut(s)	560, 792
AfaI	GTAC	3 cut(s)	380, 698, 758
AfiI	CCNNNNNNNGG	6 cut(s)	132, 288, 341, 583, 721, 752
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	3 cut(s)	251, 270, 818
AgsI	TTSAA	6 cut(s)	22, 340, 355, 437, 523, 565
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	7 cut(s)	204, 246, 325, 433, 750, 812, 853
AluI	AGCT	7 cut(s)	204, 246, 325, 433, 750, 812, 853
Alw21I	GWGCWC	2 cut(s)	141, 752
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	737, 750
Ama87I	CYCGRG	1 cut(s)	751
ApeKI	GCWGC	2 cut(s)	246, 509
ApoI	RAATTY	2 cut(s)	560, 792
AseI	ATTAAT	1 cut(s)	690
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	396, 453
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	136, 628, 778
AvaI	CYCGRG	1 cut(s)	751
AvaII	GGWCC	2 cut(s)	396, 453
BamHI	GGATCC	1 cut(s)	742
BanII	GRGCYC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	141, 752
BbvI	GCAGC	2 cut(s)	233, 496
BccI	CCATC	1 cut(s)	823
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	102, 680
BfmI	CTRYAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	247, 510
BlsI	GCNGC	2 cut(s)	248, 511
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	396, 453
BmeT110I	CYCGRG	1 cut(s)	751
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	396, 453
BmiI	GGNNCC	3 cut(s)	398, 648, 744
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	381, 544
BoxI	GACNNNNGTC	1 cut(s)	622
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	6 cut(s)	132, 288, 341, 583, 721, 752
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	6 cut(s)	132, 288, 341, 583, 721, 752
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	233, 496
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	141, 752
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	5 cut(s)	380, 382, 425, 560, 630
BslI	CCNNNNNNNGG	6 cut(s)	132, 288, 341, 583, 721, 752
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	5 cut(s)	380, 382, 425, 560, 630
BsoBI	CYCGRG	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	141, 752
Bsp143I	GATC	2 cut(s)	742, 838
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	2 cut(s)	109, 489
BspFNI	CGCG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	398, 648, 744
BspPI	GGATC	2 cut(s)	737, 750
BspTI	CTTAAG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	742, 838
BssSI	CACGAG	1 cut(s)	848
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	848
Bst4CI	ACNGT	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	107, 197, 251
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	745, 841
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	742, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 201
BstNSI	RCATGY	1 cut(s)	822
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	233, 496
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	538
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	3 cut(s)	107, 197, 251
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	396, 453
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	379, 697, 757
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
CviAII	CATG	7 cut(s)	89, 127, 314, 393, 401, 739, 819
CviQI	GTAC	3 cut(s)	379, 697, 757
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	744, 840
DpnII	GATC	2 cut(s)	742, 838
DrdI	GACNNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	396, 453
Eco53kI	GAGCTC	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	7 cut(s)	92, 130, 317, 396, 404, 742, 822
FaqI	GGGAC	5 cut(s)	380, 382, 425, 560, 630
FatI	CATG	7 cut(s)	88, 126, 313, 392, 400, 738, 818
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	247, 510
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	2 cut(s)	247, 510
FspBI	CTAG	2 cut(s)	102, 680
GluI	GCNGC	2 cut(s)	247, 510
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	648
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	7 cut(s)	92, 130, 317, 396, 404, 742, 822
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	59, 843
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	3 cut(s)	136, 628, 778
Hpy166II	GTNNAC	2 cut(s)	276, 347
Hpy188I	TCNGA	3 cut(s)	517, 747, 816
Hpy188III	TCNNGA	3 cut(s)	89, 627, 826
Hpy8I	GTNNAC	2 cut(s)	276, 347
HpyAV	CCTTC	2 cut(s)	168, 346
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	270, 381
HpyCH4V	TGCA	4 cut(s)	186, 195, 209, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 201
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	270, 381
Hsp92II	CATG	7 cut(s)	92, 130, 317, 396, 404, 742, 822
Kzo9I	GATC	2 cut(s)	742, 838
LmnI	GCTCC	2 cut(s)	136, 817
LpnPI	CCDG	6 cut(s)	150, 222, 377, 612, 728, 802
Lsp1109I	GCAGC	2 cut(s)	233, 496
LweI	GCATC	2 cut(s)	381, 544
MaeI	CTAG	2 cut(s)	102, 680
MaeII	ACGT	2 cut(s)	270, 381
MaeIII	GTNAC	2 cut(s)	382, 659
MalI	GATC	2 cut(s)	744, 840
MboI	GATC	2 cut(s)	742, 838
MboII	GAAGA	7 cut(s)	124, 323, 367, 599, 715, 815, 818
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	2 cut(s)	141, 752
MluCI	AATT	4 cut(s)	560, 687, 706, 792
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	6 cut(s)	70, 292, 589, 607, 623, 637
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	3 cut(s)	321, 423, 690
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	192, 201
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	2 cut(s)	742, 838
NlaIII	CATG	7 cut(s)	92, 130, 317, 396, 404, 742, 822
NlaIV	GGNNCC	3 cut(s)	398, 648, 744
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	822
PagI	TCATGA	1 cut(s)	88
PciI	ACATGT	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	843
PflMI	CCANNNNNTGG	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	248, 511
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	382
PscI	ACATGT	1 cut(s)	818
PshAI	GACNNNNGTC	1 cut(s)	622
PshBI	ATTAAT	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	3 cut(s)	398, 648, 744
PspPI	GGNCC	2 cut(s)	396, 453
PsrI	GAACNNNNNNTAC	2 cut(s)	761, 793
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	3 cut(s)	380, 698, 758
RsaNI	GTAC	3 cut(s)	379, 697, 757
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	321, 423, 690
SatI	GCNGC	2 cut(s)	247, 510
Sau3AI	GATC	2 cut(s)	742, 838
Sau96I	GGNCC	2 cut(s)	396, 453
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	141, 752
SfaNI	GCATC	2 cut(s)	381, 544
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	2 cut(s)	396, 453
SmlI	CTYRAG	2 cut(s)	285, 422
SmoI	CTYRAG	2 cut(s)	285, 422
Sse9I	AATT	4 cut(s)	560, 687, 706, 792
SsiI	CCGC	2 cut(s)	109, 489
SspMI	CTAG	2 cut(s)	102, 680
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	273, 384
TaqI	TCGA	2 cut(s)	670, 841
TasI	AATT	4 cut(s)	560, 687, 706, 792
TfiI	GAWTC	1 cut(s)	843
Tru1I	TTAA	3 cut(s)	321, 423, 690
Tru9I	TTAA	3 cut(s)	321, 423, 690
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	246, 509
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	5 cut(s)	105, 317, 381, 420, 779
TspRI	CASTG	1 cut(s)	738
Van91I	CCANNNNNTGG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	396, 453
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	2 cut(s)	560, 792
XceI	RCATGY	1 cut(s)	822
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	102, 680
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.