Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007576

Physical Location & Seq

Genomic Coordinates Forward (+)

3059774 .. 3061683

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTTGCTGATCAAATGATTACAAGGATAGAGTTTGCGCACTCGAAAGGTTTTCTGCACAGAGATATAAAACCTGATAATTTCCTCATGGGTCTTGGTCGAAAAGCAAATCAGGTTTACATAATTGATTTTGGTCTTGCGAAAAGATATCGAGACGCGACAACCAATCGTCACATCCCATACAGGGAGAATAAGAACTTAACAGGAACCGCACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAGAGTCGGCGGGATGATTTGGAGTCTCTTGGATATGTTCTTCTATATTTTCTCAGAGGAAGCCTTCCGTGGCAGGGTTTAAAAGCTGCCACAAAAAAGCAAAAATATGACAAAATTTGTGAGAAGAAGTTATCAACCCCTATTGAGGTTCTATGCAAATCTCACCCGGTGGAGTTCGCATCATATTTCCATTACTGCCATTCACTGACATTCGATCAGCGACCTGATTACGGATTCTTGAAACGCCTATTCCGTGATTTGTTTTCTCGTGAAGGGTATGAATTTGATTACGTATTTGATTGGACCATCATTAAGTACCAGCAATCACAAAAGAATGATTCTCCGGTTCCTGGAGGAAGCAACAGTCATGCAATGCCAGTGCGGGTAGATAATCATCAAGTTTCCTTTAGTGAACTTTTGCATATCTTACCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

229

Amino Acids

26.59

Weight (kDa)

9.16

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28860 AT4G28860 AT4G28880 AT4G28880 AT4G28880 AT4G28880
fragaria_vesca	FvH4_1g05680 FvH4_1g05680
malus_domestica	MD02G1058000.v1.1 MD15G1192500.v1.1
prunus_persica	Prupe.7G224800_v2.0.a1 Prupe.7G224800_v2.0.a1
pyrus_communis	pycom02g04710 pycom15g17220
rosa_chinensis	RchiOBHm_Chr2g0091351
rosa_laevigata	RLG00000016214
rosa_multiflora	Rmu_sc0002270.1_g000051
rosa_roxburghii	Rroxscaffold_2G00150190
rosa_rugosa	Rorug02G0016600 Rorug02G0016700 Rorug02G0016800
rosa_samantha	Rh2AG061500 Rh2BG060900
rosa_wichuraiana	Rw2G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	39
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	210, 259, 631
AcsI	RAATTY	2 cut(s)	363, 530
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	5 cut(s)	184, 323, 394, 479, 599
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	225, 335, 684
AluI	AGCT	3 cut(s)	225, 335, 684
Alw26I	GTCTC	2 cut(s)	147, 279
ApeKI	GCWGC	2 cut(s)	225, 335
ApoI	RAATTY	2 cut(s)	363, 530
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	212, 322
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	147, 279
BisI	GCNGC	2 cut(s)	226, 336
BlsI	GCNGC	2 cut(s)	227, 337
Bme1390I	CCNGG	2 cut(s)	416, 600
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	208, 597
BmrFI	CCNGG	2 cut(s)	416, 600
BmsI	GCATC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 323, 394, 479, 599
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	174, 268
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	5 cut(s)	184, 323, 394, 479, 599
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	212, 322
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	416, 593
BslI	CCNNNNNNNGG	5 cut(s)	184, 323, 394, 479, 599
BsmAI	GTCTC	2 cut(s)	147, 279
BsmBI	CGTCTC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	10, 463
BspACI	CCGC	3 cut(s)	210, 259, 631
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	208, 597
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	10, 463
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	6, 223
BstDEI	CTNAG	1 cut(s)	302
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	174, 268
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	13, 466
BstMAI	GTCTC	2 cut(s)	147, 279
BstMBI	GATC	2 cut(s)	10, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 256
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	414, 598
BstSNI	TACGTA	1 cut(s)	541
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	212, 322
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	174, 268
BtsIMutI	CAGTG	2 cut(s)	452, 633
Cac8I	GCNNGC	2 cut(s)	6, 223
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	88, 617
CviJI	RGCY	4 cut(s)	225, 312, 335, 684
CviKI_1	RGCY	4 cut(s)	225, 312, 335, 684
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	2 cut(s)	12, 465
DpnII	GATC	2 cut(s)	10, 463
DraI	TTTAAA	1 cut(s)	330
DraIII	CACNNNGTG	1 cut(s)	418
Eco105I	TACGTA	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	91, 620
FatI	CATG	2 cut(s)	87, 616
FauI	CCCGC	2 cut(s)	252, 624
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	226, 336
FokI	GGATG	2 cut(s)	161, 275
Fsp4HI	GCNGC	2 cut(s)	226, 336
FspI	TGCGCA	1 cut(s)	39
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	226, 336
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	621
HapII	CCGG	2 cut(s)	416, 593
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	91, 620
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	4 cut(s)	253, 272, 483, 587
HpaII	CCGG	2 cut(s)	416, 593
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	118, 662
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	152, 487, 518
Hpy8I	GTNNAC	2 cut(s)	118, 662
HpyAV	CCTTC	2 cut(s)	323, 515
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	2 cut(s)	214, 540
HpyCH4V	TGCA	6 cut(s)	58, 221, 228, 405, 620, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 256
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	214, 540
Hsp92II	CATG	2 cut(s)	91, 620
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 463
Lsp1109I	GCAGC	2 cut(s)	212, 322
LweI	GCATC	1 cut(s)	437
MaeII	ACGT	2 cut(s)	214, 540
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	12, 465
MboI	GATC	2 cut(s)	10, 463
MboII	GAAGA	2 cut(s)	281, 385
MluCI	AATT	5 cut(s)	79, 123, 243, 363, 530
MlyI	GAGTC	2 cut(s)	262, 281
MnlI	CCTC	4 cut(s)	95, 299, 388, 596
MseI	TTAA	3 cut(s)	200, 329, 561
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	2 cut(s)	416, 593
MspR9I	CCNGG	2 cut(s)	416, 600
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	218, 256
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	2 cut(s)	10, 463
NlaIII	CATG	2 cut(s)	91, 620
NlaIV	GGNNCC	2 cut(s)	208, 597
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	483, 587
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	227, 337
PleI	GAGTC	2 cut(s)	261, 280
PpsI	GAGTC	2 cut(s)	261, 280
Ppu21I	YACGTR	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	208, 597
PspPI	GGNCC	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	200, 329, 561
SatI	GCNGC	2 cut(s)	226, 336
Sau3AI	GATC	2 cut(s)	10, 463
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	2 cut(s)	262, 281
ScrFI	CCNGG	2 cut(s)	416, 600
SfaNI	GCATC	1 cut(s)	437
SinI	GGWCC	1 cut(s)	552
SnaBI	TACGTA	1 cut(s)	541
Sse9I	AATT	5 cut(s)	79, 123, 243, 363, 530
SsiI	CCGC	3 cut(s)	210, 259, 631
StyD4I	CCNGG	2 cut(s)	414, 598
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	2 cut(s)	217, 543
TaqI	TCGA	4 cut(s)	44, 100, 151, 462
TasI	AATT	5 cut(s)	79, 123, 243, 363, 530
TfiI	GAWTC	2 cut(s)	483, 587
Tru1I	TTAA	3 cut(s)	200, 329, 561
Tru9I	TTAA	3 cut(s)	200, 329, 561
TscAI	CASTG	2 cut(s)	459, 633
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	225, 335
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	3 cut(s)	306, 491, 495
TspRI	CASTG	2 cut(s)	459, 633
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	2 cut(s)	363, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.