Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1413810 .. 1414716

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0016800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATCTCCGGATAGTGGAGCCAGCTGACCCGACTTCCCCAAGCGGCCTCAAGAAAAAGCTACGTTCTTCCCTTTGCATTATCCCTTGCTTCACCAACTCTAAATCCCATCATCACCACCACCACCACCAGGGCTCCGCCACTGCCCCTACGACCCCTCAAGGCTGCAGCGCCAGCGGCCGCAGCCGAGATGATTTAGGCCTCCTACGTCCCTCCGACGCCTCCCTCTCCACCCCAAAATCAGCACGCTCCCACCACCACCACGAGTTCTCCGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGCCGCATGGGGCGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACGACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACCCCAACATGGATGACGACAGCTTTCCCCTCAGAAACTTCTCGGCGAGGTTGCCGCATTCCCCTCCGGCCGAGTCCGCCGCCGCTTCTCCGGGGTCCAATGAGATTACTGTAGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

170

Amino Acids

18.69

Weight (kDa)

8.41

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28860 AT4G28860 AT4G28880 AT4G28880 AT4G28880 AT4G28880
fragaria_vesca	FvH4_1g05680 FvH4_1g05680
malus_domestica	MD02G1058000.v1.1 MD15G1192500.v1.1
prunus_persica	Prupe.7G224800_v2.0.a1 Prupe.7G224800_v2.0.a1
pyrus_communis	pycom02g04710 pycom15g17220
rosa_chinensis	RchiOBHm_Chr2g0091351
rosa_laevigata	RLG00000016214
rosa_multiflora	Rmu_sc0002270.1_g000051
rosa_roxburghii	Rroxscaffold_2G00150190
rosa_rugosa	Rorug02G0016600 Rorug02G0016700 Rorug02G0016800
rosa_samantha	Rh2AG061500 Rh2BG060900
rosa_wichuraiana	Rw2G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	9
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	178, 304, 459
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	2 cut(s)	219, 316
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	16, 130, 400
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	26, 61, 277, 414, 506
AluI	AGCT	5 cut(s)	26, 61, 277, 414, 506
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	5 cut(s)	46, 178, 199, 304, 459
ApeKI	GCWGC	3 cut(s)	165, 168, 183
AspLEI	GCGC	3 cut(s)	173, 318, 373
AspS9I	GGNCC	2 cut(s)	391, 486
AsuC2I	CCSGG	2 cut(s)	340, 483
AsuHPI	GGTGA	2 cut(s)	85, 107
AvaII	GGWCC	2 cut(s)	391, 486
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	137
BauI	CACGAG	2 cut(s)	263, 386
BbvI	GCAGC	3 cut(s)	152, 180, 195
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	340, 483
BfmI	CTRYAG	2 cut(s)	166, 501
BfoI	RGCGCY	2 cut(s)	174, 319
Bme1390I	CCNGG	3 cut(s)	131, 340, 483
Bme18I	GGWCC	2 cut(s)	391, 486
BmgT120I	GGNCC	2 cut(s)	391, 486
BmiI	GGNNCC	5 cut(s)	21, 136, 317, 393, 487
BmrFI	CCNGG	3 cut(s)	131, 340, 483
BoxI	GACNNNNGTC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	35, 144
BpuMI	CCSGG	2 cut(s)	340, 483
BsaHI	GRCGYC	2 cut(s)	219, 316
BsaJI	CCNNGG	3 cut(s)	130, 339, 482
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 130, 400
BseAI	TCCGGA	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	130, 339, 482
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	16, 130, 400
BseMII	CTCAG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	343
BseX3I	CGGCCG	2 cut(s)	178, 459
BseXI	GCAGC	3 cut(s)	152, 180, 195
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	2 cut(s)	181, 462
BshFI	GGCC	5 cut(s)	48, 180, 201, 306, 461
BshNI	GGYRCC	1 cut(s)	315
BsiEI	CGRYCG	2 cut(s)	181, 462
BsiSI	CCGG	4 cut(s)	10, 339, 458, 482
BslFI	GGGAC	2 cut(s)	195, 356
BslI	CCNNNNNNNGG	3 cut(s)	16, 130, 400
BsmFI	GGGAC	2 cut(s)	195, 356
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	5 cut(s)	48, 180, 201, 306, 461
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	4, 382
BspANI	GGCC	5 cut(s)	48, 180, 201, 306, 461
BspCNI	CTCAG	1 cut(s)	435
BspEI	TCCGGA	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	5 cut(s)	21, 136, 317, 393, 487
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	130, 339, 482
BssMI	GATC	2 cut(s)	4, 382
BssNI	GRCGYC	2 cut(s)	219, 316
BssSI	CACGAG	2 cut(s)	263, 386
Bst2BI	CACGAG	2 cut(s)	263, 386
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	502
BstACI	GRCGYC	2 cut(s)	219, 316
BstC8I	GCNNGC	3 cut(s)	24, 175, 247
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	2 cut(s)	174, 319
BstHHI	GCGC	3 cut(s)	173, 318, 373
BstKTI	GATC	2 cut(s)	7, 385
BstMBI	GATC	2 cut(s)	4, 382
BstMCI	CGRYCG	2 cut(s)	181, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 177, 183, 315, 467
BstNI	CCWGG	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	129, 338, 481
BstSFI	CTRYAG	2 cut(s)	166, 501
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	152, 180, 195
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	2 cut(s)	178, 459
BsuRI	GGCC	5 cut(s)	48, 180, 201, 306, 461
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	24, 175, 247
CciNI	GCGGCCGC	1 cut(s)	178
CfoI	GCGC	3 cut(s)	173, 318, 373
Cfr13I	GGNCC	2 cut(s)	391, 486
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	310, 400
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	422
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	2 cut(s)	6, 384
DpnII	GATC	2 cut(s)	4, 382
EaeI	YGGCCR	3 cut(s)	178, 304, 459
EagI	CGGCCG	2 cut(s)	178, 459
EciI	GGCGGA	2 cut(s)	127, 457
EclXI	CGGCCG	2 cut(s)	178, 459
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	391, 486
Eco52I	CGGCCG	2 cut(s)	178, 459
Eco57I	CTGAAG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
FaeI	CATG	2 cut(s)	313, 403
FaiI	YATR	2 cut(s)	311, 401
FaqI	GGGAC	2 cut(s)	195, 356
FatI	CATG	2 cut(s)	309, 399
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	382
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	137
GlaI	GCGC	3 cut(s)	172, 317, 372
HaeII	RGCGCY	2 cut(s)	174, 319
HaeIII	GGCC	5 cut(s)	48, 180, 201, 306, 461
HapII	CCGG	4 cut(s)	10, 339, 458, 482
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	173, 318, 373
Hin1I	GRCGYC	2 cut(s)	219, 316
Hin1II	CATG	2 cut(s)	313, 403
Hin6I	GCGC	3 cut(s)	171, 316, 371
HinP1I	GCGC	3 cut(s)	171, 316, 371
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	4 cut(s)	10, 339, 458, 482
HphI	GGTGA	2 cut(s)	85, 107
Hpy188I	TCNGA	4 cut(s)	217, 274, 294, 425
Hpy188III	TCNNGA	3 cut(s)	10, 52, 386
Hpy99I	CGWCG	2 cut(s)	221, 359
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	64, 208
HpyCH4V	TGCA	2 cut(s)	78, 168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 177, 183, 315, 467
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	2 cut(s)	64, 208
Hsp92I	GRCGYC	2 cut(s)	219, 316
Hsp92II	CATG	2 cut(s)	313, 403
HspAI	GCGC	3 cut(s)	171, 316, 371
KasI	GGCGCC	1 cut(s)	315
Kpn2I	TCCGGA	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	4, 382
LmnI	GCTCC	3 cut(s)	19, 140, 254
LpnPI	CCDG	8 cut(s)	23, 36, 116, 143, 187, 352, 471, 495
Lsp1109I	GCAGC	3 cut(s)	152, 180, 195
MaeII	ACGT	2 cut(s)	64, 208
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	6, 384
MboI	GATC	2 cut(s)	4, 382
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	1 cut(s)	508
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	240, 272
MroI	TCCGGA	1 cut(s)	9
MseI	TTAA	1 cut(s)	511
MspA1I	CMGCKG	3 cut(s)	26, 177, 324
MspI	CCGG	4 cut(s)	10, 339, 458, 482
MspR9I	CCNGG	3 cut(s)	131, 340, 483
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	5 cut(s)	174, 177, 183, 315, 467
NarI	GGCGCC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	340, 483
NdeII	GATC	2 cut(s)	4, 382
NlaIII	CATG	2 cut(s)	313, 403
NlaIV	GGNNCC	5 cut(s)	21, 136, 317, 393, 487
NmeAIII	GCCGAG	3 cut(s)	212, 413, 487
NotI	GCGGCCGC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	5 cut(s)	21, 136, 317, 393, 487
PspPI	GGNCC	2 cut(s)	391, 486
PspPPI	RGGWCCY	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	511
Sau3AI	GATC	2 cut(s)	4, 382
Sau96I	GGNCC	2 cut(s)	391, 486
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	131, 340, 483
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	8 cut(s)	28, 63, 67, 211, 279, 416, 443, 508
SfcI	CTRYAG	2 cut(s)	166, 501
SfoI	GGCGCC	1 cut(s)	317
SinI	GGWCC	2 cut(s)	391, 486
SmlI	CTYRAG	2 cut(s)	50, 159
SmoI	CTYRAG	2 cut(s)	50, 159
Sse9I	AATT	1 cut(s)	508
SseBI	AGGCCT	1 cut(s)	201
SspDI	GGCGCC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	129, 338, 481
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	67, 211
TasI	AATT	1 cut(s)	508
TauI	GCSGC	7 cut(s)	48, 180, 183, 309, 448, 473, 476
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	3 cut(s)	165, 168, 183
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	391, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.