Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007576

Physical Location & Seq

Genomic Coordinates Forward (+)

1395816 .. 1396091

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCCCGATCTGAATGAAGAGCTAACCCCGCCCTCTGAGTCCTCCAGAGATGAAGATAATGGATGCAGTTTGCAGCAGGCTGTGGAGGCAGATGATGATGCTGTGTCTCATGACATGGTGAAGAATGGCCTAGCAAGATCACGTGGTAGTGGTGATTCACAGACCTGGACTCGTGGGATTACTGGGGATGTCCCTGCTGTGATTACCGGGCAGAAATTTGCAGGAAGAGGAAAGGAAACACAAATAAAGAGACCCATGATTGTGACAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

91

Amino Acids

9.73

Weight (kDa)

4.67

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28860 AT4G28860 AT4G28880 AT4G28880 AT4G28880 AT4G28880
fragaria_vesca	FvH4_1g05680 FvH4_1g05680
malus_domestica	MD02G1058000.v1.1 MD15G1192500.v1.1
prunus_persica	Prupe.7G224800_v2.0.a1 Prupe.7G224800_v2.0.a1
pyrus_communis	pycom02g04710 pycom15g17220
rosa_chinensis	RchiOBHm_Chr2g0091351
rosa_laevigata	RLG00000016214
rosa_multiflora	Rmu_sc0002270.1_g000051
rosa_roxburghii	Rroxscaffold_2G00150190
rosa_rugosa	Rorug02G0016600 Rorug02G0016700 Rorug02G0016800
rosa_samantha	Rh2AG061500 Rh2BG060900
rosa_wichuraiana	Rw2G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	111, 244
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	130, 164
BauI	CACGAG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	111, 244
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	166, 208
BmrFI	CCNGG	2 cut(s)	166, 208
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	53, 88
BmuI	ACTGGG	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	68, 193
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	111, 244
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	7, 137
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	7, 137
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	12, 220
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	68, 193
BstKTI	GATC	2 cut(s)	10, 140
BstMAI	GTCTC	2 cut(s)	111, 244
BstMBI	GATC	2 cut(s)	7, 137
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 86
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	164, 206
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	68, 193
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	109
CviAII	CATG	3 cut(s)	110, 115, 256
CviJI	RGCY	3 cut(s)	22, 80, 129
CviKI_1	RGCY	3 cut(s)	22, 80, 129
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	9, 139
DpnII	GATC	2 cut(s)	7, 137
Eam1104I	CTCTTC	2 cut(s)	12, 220
EarI	CTCTTC	2 cut(s)	12, 220
Eco31I	GGTCTC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	113, 118, 259
FaiI	YATR	3 cut(s)	111, 116, 257
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	109, 114, 255
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	75, 200
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	3 cut(s)	113, 118, 259
HinfI	GANTC	3 cut(s)	38, 155, 169
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	130, 164
Hpy188I	TCNGA	2 cut(s)	12, 37
Hpy188III	TCNNGA	2 cut(s)	45, 110
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	66, 73, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 86
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	113, 118, 259
Kzo9I	GATC	2 cut(s)	7, 137
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	8 cut(s)	58, 62, 151, 168, 178, 207, 207, 220
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	53, 88
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	9, 139
MboI	GATC	2 cut(s)	7, 137
MboII	GAAGA	4 cut(s)	29, 65, 133, 237
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	47, 163
MnlI	CCTC	4 cut(s)	43, 52, 79, 221
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	166, 208
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	28, 86
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	7, 137
NlaIII	CATG	3 cut(s)	113, 118, 259
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	2 cut(s)	46, 163
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	46, 163
Ppu21I	YACGTR	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	164
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	7, 137
SchI	GAGTC	2 cut(s)	47, 163
ScrFI	CCNGG	2 cut(s)	166, 208
SetI	ASST	3 cut(s)	24, 145, 167
SfaNI	GCATC	2 cut(s)	53, 88
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	164, 206
TaiI	ACGT	1 cut(s)	145
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	30, 66
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.