AT4G28880
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14251135 .. 14254946
3812 bp
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UTR
Exon/CDS
Intron
AT4G28880.2

Sequence Viewer

Length: 1248 bp
ATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAGAATTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGCTAACAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGATATCAACTCCCATTGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTCATTACTGCCATACACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCATAAAGTATCAACAAGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCAATCCTCGTGCAATGCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTCTGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATAAATAATAATACTGCTGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCGGACCCGAAACCTCAAATTCTGGATATGGGAGTGGGAATAGAACTGGTTGGACTTCGTCATTCATGTCTCCAGAGAAATGA

Protein Analysis

415

Amino Acids

46.89

Weight (kDa)

9.43

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 227 8.7e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 266 2.2e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 116 - 206 4.3e-09 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1148
AccB1I GGYRCC 1 cut(s) 1148
AccB7I CCANNNNNTGG 1 cut(s) 797
AccI GTMKAC 2 cut(s) 282, 574
AccII CGCG 3 cut(s) 199, 835, 1017
AciI CCGC 7 cut(s) 18, 48, 197, 487, 811, 835, 1145
AcsI RAATTY 6 cut(s) 171, 192, 296, 350, 514, 1183
AdeI CACNNNGTG 1 cut(s) 736
AfaI GTAC 3 cut(s) 26, 357, 1150
AfiI CCNNNNNNNGG 3 cut(s) 502, 641, 797
AflII CTTAAG 1 cut(s) 647
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 2 cut(s) 179, 808
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 925
AloI GAACNNNNNNTCC 2 cut(s) 1109, 1141
AluBI AGCT 5 cut(s) 31, 77, 107, 158, 163
AluI AGCT 5 cut(s) 31, 77, 107, 158, 163
Alw26I GTCTC 3 cut(s) 269, 918, 1239
AlwNI CAGNNNCTG 2 cut(s) 527, 926
AoxI GGCC 2 cut(s) 409, 1005
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 6 cut(s) 171, 192, 296, 350, 514, 1183
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp718I GGTACC 1 cut(s) 1148
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 2 cut(s) 201, 789
AspS9I GGNCC 5 cut(s) 257, 409, 980, 1040, 1169
AsuC2I CCSGG 1 cut(s) 1086
AsuHPI GGTGA 3 cut(s) 294, 722, 1088
AsuII TTCGAA 1 cut(s) 362
AvaII GGWCC 4 cut(s) 257, 980, 1040, 1169
AvrII CCTAGG 1 cut(s) 412
BanI GGYRCC 1 cut(s) 1148
BauI CACGAG 1 cut(s) 942
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 3 cut(s) 215, 238, 1132
BciT130I CCWGG 1 cut(s) 927
BclI TGATCA 3 cut(s) 328, 781, 1093
BcnI CCSGG 1 cut(s) 1086
BcoDI GTCTC 3 cut(s) 269, 918, 1239
BfaI CTAG 5 cut(s) 74, 413, 587, 903, 933
BfmI CTRYAG 1 cut(s) 1071
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 647
BglII AGATCT 1 cut(s) 271
BisI GCNGC 3 cut(s) 19, 812, 1071
BlnI CCTAGG 1 cut(s) 412
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 3 cut(s) 20, 813, 1072
Bme1390I CCNGG 2 cut(s) 927, 1086
Bme18I GGWCC 4 cut(s) 257, 980, 1040, 1169
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 5 cut(s) 257, 409, 980, 1040, 1169
BmiI GGNNCC 2 cut(s) 1150, 1171
BmrFI CCNGG 2 cut(s) 927, 1086
BmsI GCATC 4 cut(s) 18, 145, 463, 755
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 1221
Bpu1102I GCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 1086
BsaJI CCNNGG 5 cut(s) 412, 635, 926, 1002, 1085
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 641, 797
Bse1I ACTGG 3 cut(s) 872, 953, 1216
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 1 cut(s) 927
BseDI CCNNGG 5 cut(s) 412, 635, 926, 1002, 1085
BseGI GGATG 5 cut(s) 136, 478, 492, 586, 1124
BseLI CCNNNNNNNGG 3 cut(s) 502, 641, 797
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 3 cut(s) 872, 953, 1216
BseXI GCAGC 1 cut(s) 1057
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 3 cut(s) 199, 835, 1017
BshFI GGCC 2 cut(s) 411, 1007
BshNI GGYRCC 1 cut(s) 1148
BsiSI CCGG 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 502, 641, 797
BsmAI GTCTC 3 cut(s) 269, 918, 1239
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 411, 1007
Bsp119I TTCGAA 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
Bsp1720I GCTNAGC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 7 cut(s) 18, 48, 197, 487, 811, 835, 1145
BspANI GGCC 2 cut(s) 411, 1007
BspCNI CTCAG 1 cut(s) 928
BspFNI CGCG 3 cut(s) 199, 835, 1017
BspLI GGNNCC 2 cut(s) 1150, 1171
BspMAI CTGCAG 1 cut(s) 1075
BspT104I TTCGAA 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 1148
BspTI CTTAAG 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 954
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 3 cut(s) 872, 953, 1216
BssECI CCNNGG 5 cut(s) 412, 635, 926, 1002, 1085
BssMI GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
BssSI CACGAG 1 cut(s) 942
BssT1I CCWWGG 2 cut(s) 412, 635
Bst2BI CACGAG 1 cut(s) 942
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 3 cut(s) 125, 287, 313
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 355
BstBI TTCGAA 1 cut(s) 362
BstDEI CTNAG 3 cut(s) 159, 620, 915
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 5 cut(s) 136, 478, 492, 586, 1124
BstFNI CGCG 3 cut(s) 199, 835, 1017
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 2 cut(s) 201, 789
BstKTI GATC 9 cut(s) 45, 102, 117, 274, 331, 586, 784, 1025, 1096
BstMAI GTCTC 3 cut(s) 269, 918, 1239
BstMBI GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 15, 536
BstNI CCWGG 1 cut(s) 927
BstNSI RCATGY 1 cut(s) 1123
BstSCI CCNGG 2 cut(s) 925, 1084
BstSFI CTRYAG 1 cut(s) 1071
BstUI CGCG 3 cut(s) 199, 835, 1017
BstV1I GCAGC 1 cut(s) 1057
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 2 cut(s) 411, 1007
BtgI CCRYGG 1 cut(s) 635
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 5 cut(s) 136, 478, 492, 586, 1124
BtsIMutI CAGTG 2 cut(s) 770, 960
CaiI CAGNNNCTG 2 cut(s) 527, 926
CfoI GCGC 2 cut(s) 201, 789
Cfr13I GGNCC 5 cut(s) 257, 409, 980, 1040, 1169
CseI GACGC 1 cut(s) 1006
Csp6I GTAC 3 cut(s) 25, 356, 1149
CspCI CAANNNNNGTGG 2 cut(s) 936, 971
CviAII CATG 4 cut(s) 406, 636, 1120, 1231
CviQI GTAC 3 cut(s) 25, 356, 1149
DdeI CTNAG 3 cut(s) 159, 620, 915
DpnI GATC 9 cut(s) 44, 101, 116, 273, 330, 585, 783, 1024, 1095
DpnII GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
DraIII CACNNNGTG 1 cut(s) 736
Eco130I CCWWGG 2 cut(s) 412, 635
Eco147I AGGCCT 1 cut(s) 1007
Eco32I GATATC 3 cut(s) 371, 467, 699
Eco47I GGWCC 4 cut(s) 257, 980, 1040, 1169
EcoRI GAATTC 2 cut(s) 171, 192
EcoRII CCWGG 1 cut(s) 925
EcoRV GATATC 3 cut(s) 371, 467, 699
EcoT14I CCWWGG 2 cut(s) 412, 635
ErhI CCWWGG 2 cut(s) 412, 635
FaeI CATG 4 cut(s) 409, 639, 1123, 1234
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 4 cut(s) 405, 635, 1119, 1230
FauI CCCGC 2 cut(s) 828, 1138
FbaI TGATCA 3 cut(s) 328, 781, 1093
FblI GTMKAC 2 cut(s) 282, 574
Fnu4HI GCNGC 3 cut(s) 19, 812, 1071
FokI GGATG 5 cut(s) 123, 479, 485, 593, 1111
Fsp4HI GCNGC 3 cut(s) 19, 812, 1071
FspBI CTAG 5 cut(s) 74, 413, 587, 903, 933
GlaI GCGC 2 cut(s) 200, 788
GluI GCNGC 3 cut(s) 19, 812, 1071
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 1221
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 2 cut(s) 411, 1007
HapII CCGG 1 cut(s) 1085
HgaI GACGC 1 cut(s) 1006
HhaI GCGC 2 cut(s) 201, 789
Hin1II CATG 4 cut(s) 409, 639, 1123, 1234
Hin6I GCGC 2 cut(s) 199, 787
HinP1I GCGC 2 cut(s) 199, 787
HincII GTYRAC 2 cut(s) 575, 658
HindII GTYRAC 2 cut(s) 575, 658
HinfI GANTC 3 cut(s) 590, 801, 1081
HpaII CCGG 1 cut(s) 1085
HphI GGTGA 3 cut(s) 294, 722, 1088
Hpy166II GTNNAC 5 cut(s) 283, 575, 658, 958, 1105
Hpy188I TCNGA 6 cut(s) 35, 62, 420, 1012, 1022, 1169
Hpy8I GTNNAC 5 cut(s) 283, 575, 658, 958, 1105
Hpy99I CGWCG 2 cut(s) 89, 579
HpyAV CCTTC 3 cut(s) 103, 173, 833
HpyCH4III ACNGT 3 cut(s) 125, 287, 313
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 8 cut(s) 376, 530, 539, 546, 723, 746, 947, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 536
HpyF3I CTNAG 3 cut(s) 159, 620, 915
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 4 cut(s) 409, 639, 1123, 1234
HspAI GCGC 2 cut(s) 199, 787
KpnI GGTACC 1 cut(s) 1152
Ksp22I TGATCA 3 cut(s) 328, 781, 1093
Kzo9I GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 4 cut(s) 18, 145, 463, 755
MaeI CTAG 5 cut(s) 74, 413, 587, 903, 933
MaeII ACGT 1 cut(s) 84
MalI GATC 9 cut(s) 44, 101, 116, 273, 330, 585, 783, 1024, 1095
MboI GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
MboII GAAGA 5 cut(s) 52, 281, 623, 703, 706
MflI RGATCY 1 cut(s) 271
MluCI AATT 8 cut(s) 171, 192, 296, 350, 441, 514, 561, 1183
MluI ACGCGT 1 cut(s) 1015
MlyI GAGTC 1 cut(s) 1075
MmeI TCCRAC 3 cut(s) 398, 1147, 1196
MseI TTAA 4 cut(s) 111, 387, 518, 648
MslI CAYNNNNRTG 1 cut(s) 713
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 1 cut(s) 1085
MspR9I CCNGG 2 cut(s) 927, 1086
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 927
MvnI CGCG 3 cut(s) 199, 835, 1017
MwoI GCNNNNNNNGC 2 cut(s) 15, 536
NciI CCSGG 1 cut(s) 1086
NcoI CCATGG 1 cut(s) 635
NdeII GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
NlaIII CATG 4 cut(s) 409, 639, 1123, 1234
NlaIV GGNNCC 2 cut(s) 1150, 1171
NmeAIII GCCGAG 1 cut(s) 1027
NspI RCATGY 1 cut(s) 1123
NspV TTCGAA 1 cut(s) 362
PceI AGGCCT 1 cut(s) 1007
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 590, 801
PflFI GACNNNGTC 1 cut(s) 1222
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 3 cut(s) 20, 813, 1072
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
Psp6I CCWGG 1 cut(s) 925
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 1150, 1171
PspPI GGNCC 5 cut(s) 257, 409, 980, 1040, 1169
PstI CTGCAG 1 cut(s) 1075
PstNI CAGNNNCTG 2 cut(s) 527, 926
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 1222
RsaI GTAC 3 cut(s) 26, 357, 1150
RsaNI GTAC 3 cut(s) 25, 356, 1149
RseI CAYNNNNRTG 1 cut(s) 713
SalI GTCGAC 1 cut(s) 573
SaqAI TTAA 4 cut(s) 111, 387, 518, 648
SatI GCNGC 3 cut(s) 19, 812, 1071
Sau3AI GATC 9 cut(s) 42, 99, 114, 271, 328, 583, 781, 1022, 1093
Sau96I GGNCC 5 cut(s) 257, 409, 980, 1040, 1169
SchI GAGTC 1 cut(s) 1075
ScrFI CCNGG 2 cut(s) 927, 1086
SfaNI GCATC 4 cut(s) 18, 145, 463, 755
SfcI CTRYAG 1 cut(s) 1071
SfuI TTCGAA 1 cut(s) 362
SinI GGWCC 4 cut(s) 257, 980, 1040, 1169
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 8 cut(s) 171, 192, 296, 350, 441, 514, 561, 1183
SseBI AGGCCT 1 cut(s) 1007
SsiI CCGC 7 cut(s) 18, 48, 197, 487, 811, 835, 1145
SspI AATATT 1 cut(s) 988
SspMI CTAG 5 cut(s) 74, 413, 587, 903, 933
StuI AGGCCT 1 cut(s) 1007
StyD4I CCNGG 2 cut(s) 925, 1084
StyI CCWWGG 2 cut(s) 412, 635
TaaI ACNGT 3 cut(s) 125, 287, 313
TaiI ACGT 1 cut(s) 87
TaqI TCGA 7 cut(s) 87, 96, 117, 267, 362, 574, 852
TaqII GACCGA 1 cut(s) 245
TasI AATT 8 cut(s) 171, 192, 296, 350, 441, 514, 561, 1183
TatI WGTACW 2 cut(s) 24, 355
TauI GCSGC 2 cut(s) 21, 814
TfiI GAWTC 2 cut(s) 590, 801
Tru1I TTAA 4 cut(s) 111, 387, 518, 648
Tru9I TTAA 4 cut(s) 111, 387, 518, 648
TscAI CASTG 2 cut(s) 777, 960
TseI GCWGC 1 cut(s) 1070
TspDTI ATGAA 6 cut(s) 168, 746, 1011, 1122, 1130, 1219
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 777, 960
Tth111I GACNNNGTC 1 cut(s) 1222
Van91I CCANNNNNTGG 1 cut(s) 797
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 4 cut(s) 257, 980, 1040, 1169
XapI RAATTY 6 cut(s) 171, 192, 296, 350, 514, 1183
XbaI TCTAGA 2 cut(s) 586, 902
XceI RCATGY 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 282, 574
XspI CTAG 5 cut(s) 74, 413, 587, 903, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.