MD02G1058000.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
4675567 .. 4680396
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1058000.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGGAGCGGGTCATCGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGCAGCGGATCGTTCGGCGAAATCTTCCTAGCTACTCACACCGAGACGTTCGAGATCGTCGCCGTTAAGATTGAGAACAGCCAAACGAAGCATCCACAGCTGCTTTACGAGGCGAAATTATATAAAATCCTTCAAGGAGGAAGCGGTATTCCGAACATAAAATGGTCGGGAATCAACGGCGAGGACAATGTGCTGGTTCTCGATTTGCTGGGACCGAGTCTTGAGGATTTGTTTGTGTATTGTGGGAGAAAGTTTTCGCTCAAGACCGTCTTAATGCTTGCTGATCAAATGATTACGAGGATAGAGTTTGTGCACTCGAAAGGTTTTCTGCACAGAGATATAAAACCTGATAATTTCCTCATGGGTCTTGGTCGAAAAGCAAATCAGGTTTACATAATTGATTTTGGTCTTGCGAAAAGATATCGAGAAGCGACAACCAATCGTCACATCCCATACAGGGAGAATAAGAACTTAACAGGAACCGCACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAGAGTCGGCGGGATGATTTGGAGTCTCTTGGATATGTTCTTCTGTATTTTCTCAGAGGGAGCCTTCCGTGGCAGGGTTTAAAAGCTGCCACAAAAAAGCAAAAATATGATAAAATTTGTGAGAAGAAGTTATCAACCCCTATTGAGGTTCTATGCAAATCTCACCCGGTGGAGTTCGCGTCATATTTCCATTACTGCCATTCACTGACATTTGATCAGCGACCTGATTATGGTTTCTTGAAACGCCTATTCCGTGATTTGTTTTCTCGTGAAGGGTATGAATTTGATTACGTATTTGATTGGACCATCATTAAGTACCAGCAAACACAAAAGAATGATTCTCCGGTTCCTGGAGGAAGCAACAGTCATGCAATGCCAGTGCGTGTAGATAATCATCAAGTGGCAGGAGGTGCTAGTGCTCCATATCCAGCTGAGGTCACAGATCGAATTAGATCAAGCAATCCCACTGGTTCTGGTGTCCGCATGCAATTTAAATCTCCAACAACGGGCAGGAATTTAAGTTATGACAACCCTCTTGAAAAGAATATTGCGAATGAAGCAAACCCTCCTCCGTCTACTTCATTTTCCGGCACCTCAAGAAGGAACCACACAAAACGTCTTTTGCCCGCTGAAGCTACAAACACTGGTCATGGACATGGCAATAAAGTAGGTCCTTCGAGTAGCTGGATTCAATCACTGCAGCGCATCTCTTCAGCCAAATGA

Protein Analysis

430

Amino Acids

48.34

Weight (kDa)

9.5

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 227 2.9e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 266 6.7e-15 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 108 - 206 1.2e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1157
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 1142
AccII CGCG 1 cut(s) 746
AciI CCGC 9 cut(s) 7, 18, 37, 51, 189, 528, 577, 1048, 1194
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 3 cut(s) 681, 848, 1081
AcuI CTGAAG 2 cut(s) 1218, 1263
AdeI CACNNNGTG 1 cut(s) 736
AfaI GTAC 2 cut(s) 26, 884
AfiI CCNNNNNNNGG 7 cut(s) 502, 641, 712, 797, 917, 1073, 1167
AgsI TTSAA 4 cut(s) 179, 808, 1106, 1259
AjnI CCWGG 1 cut(s) 916
AluBI AGCT 8 cut(s) 31, 77, 145, 543, 653, 998, 1202, 1251
AluI AGCT 8 cut(s) 31, 77, 145, 543, 653, 998, 1202, 1251
Alw21I GWGCWC 2 cut(s) 360, 988
Alw26I GTCTC 2 cut(s) 83, 597
Alw44I GTGCAC 1 cut(s) 356
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 34
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 5 cut(s) 48, 145, 543, 653, 1267
ApoI RAATTY 3 cut(s) 681, 848, 1081
Asp700I GAANNNNTTC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 1272
AspS9I GGNCC 3 cut(s) 257, 870, 1238
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 722
AvaII GGWCC 3 cut(s) 257, 870, 1238
BaeGI GKGCMC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 1157
BauI CACGAG 1 cut(s) 834
Bbv12I GWGCWC 2 cut(s) 360, 988
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 5 cut(s) 60, 132, 530, 640, 1279
BccI CCATC 1 cut(s) 881
BceAI ACGGC 2 cut(s) 92, 238
BciT130I CCWGG 1 cut(s) 918
BclI TGATCA 2 cut(s) 328, 781
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 2 cut(s) 83, 597
BfaI CTAG 2 cut(s) 74, 981
BfmI CTRYAG 1 cut(s) 1265
BisI GCNGC 7 cut(s) 19, 37, 49, 146, 544, 654, 1268
BlsI GCNGC 7 cut(s) 20, 38, 50, 147, 545, 655, 1269
Bme1390I CCNGG 2 cut(s) 734, 918
Bme18I GGWCC 3 cut(s) 257, 870, 1238
BmgT120I GGNCC 3 cut(s) 257, 870, 1238
BmiI GGNNCC 6 cut(s) 258, 526, 629, 915, 1159, 1172
BmrFI CCNGG 2 cut(s) 734, 918
BmsI GCATC 2 cut(s) 145, 1281
BpmI CTGGAG 1 cut(s) 939
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 3 cut(s) 287, 290, 1147
BpuMI CCSGG 1 cut(s) 734
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 960
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 1 cut(s) 910
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 7 cut(s) 502, 641, 712, 797, 917, 1073, 1167
Bse1I ACTGG 3 cut(s) 944, 1039, 1216
Bse3DI GCAATG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 1 cut(s) 918
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 3 cut(s) 136, 492, 586
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 7 cut(s) 502, 641, 712, 797, 917, 1073, 1167
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 2 cut(s) 634, 990
BseNI ACTGG 3 cut(s) 944, 1039, 1216
BseRI GAGGAG 1 cut(s) 1125
BseSI GKGCMC 1 cut(s) 360
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 5 cut(s) 60, 132, 530, 640, 1279
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 1157
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 360, 988
BsiSI CCGG 3 cut(s) 734, 911, 1155
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 7 cut(s) 502, 641, 712, 797, 917, 1073, 1167
BsmAI GTCTC 2 cut(s) 83, 597
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 360, 988
Bsp143I GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
BspACI CCGC 9 cut(s) 7, 18, 37, 51, 189, 528, 577, 1048, 1194
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 633, 991
BspFNI CGCG 1 cut(s) 746
BspLI GGNNCC 6 cut(s) 258, 526, 629, 915, 1159, 1172
BspMAI CTGCAG 1 cut(s) 1269
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 1157
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 945
BsrI ACTGG 3 cut(s) 944, 1039, 1216
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 2 cut(s) 313, 932
Bst6I CTCTTC 1 cut(s) 1282
BstAPI GCANNNNNTGC 2 cut(s) 536, 977
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 324, 541, 1052, 1194
BstDEI CTNAG 2 cut(s) 620, 999
BstDSI CCRYGG 1 cut(s) 635
BstENI CCTNNNNNAGG 1 cut(s) 1165
BstF5I GGATG 3 cut(s) 136, 492, 586
BstFNI CGCG 1 cut(s) 746
BstHHI GCGC 1 cut(s) 1272
BstKTI GATC 7 cut(s) 45, 56, 102, 331, 784, 1012, 1022
BstMAI GTCTC 2 cut(s) 83, 597
BstMBI GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 6 cut(s) 45, 142, 536, 574, 977, 1124
BstNI CCWGG 1 cut(s) 918
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 732, 916
BstSFI CTRYAG 1 cut(s) 1265
BstSLI GKGCMC 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 859
BstUI CGCG 1 cut(s) 746
BstV1I GCAGC 5 cut(s) 60, 132, 530, 640, 1279
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 3 cut(s) 136, 492, 586
BtsI GCAGTG 1 cut(s) 1262
BtsIMutI CAGTG 5 cut(s) 770, 951, 1032, 1209, 1262
Cac8I GCNNGC 4 cut(s) 324, 541, 1052, 1194
CfoI GCGC 1 cut(s) 1272
Cfr13I GGNCC 3 cut(s) 257, 870, 1238
CseI GACGC 1 cut(s) 735
Csp6I GTAC 2 cut(s) 25, 883
CviAII CATG 5 cut(s) 406, 935, 1051, 1217, 1223
CviQI GTAC 2 cut(s) 25, 883
DdeI CTNAG 2 cut(s) 620, 999
DpnI GATC 7 cut(s) 44, 55, 101, 330, 783, 1011, 1021
DpnII GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
DraI TTTAAA 2 cut(s) 648, 1060
DraIII CACNNNGTG 1 cut(s) 736
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 1282
EarI CTCTTC 1 cut(s) 1282
EclXI CGGCCG 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 859
Eco32I GATATC 1 cut(s) 467
Eco47I GGWCC 3 cut(s) 257, 870, 1238
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 1218, 1263
EcoNI CCTNNNNNAGG 1 cut(s) 1165
EcoO109I RGGNCCY 1 cut(s) 1238
EcoRII CCWGG 1 cut(s) 916
EcoRV GATATC 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 5 cut(s) 409, 938, 1054, 1220, 1226
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 270
FatI CATG 5 cut(s) 405, 934, 1050, 1216, 1222
FauI CCCGC 2 cut(s) 570, 1201
FbaI TGATCA 2 cut(s) 328, 781
FblI GTMKAC 1 cut(s) 1142
Fnu4HI GCNGC 7 cut(s) 19, 37, 49, 146, 544, 654, 1268
FokI GGATG 3 cut(s) 123, 479, 593
Fsp4HI GCNGC 7 cut(s) 19, 37, 49, 146, 544, 654, 1268
FspBI CTAG 2 cut(s) 74, 981
GlaI GCGC 1 cut(s) 1271
GluI GCNGC 7 cut(s) 19, 37, 49, 146, 544, 654, 1268
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 1 cut(s) 36
HapII CCGG 3 cut(s) 734, 911, 1155
HgaI GACGC 1 cut(s) 735
HhaI GCGC 1 cut(s) 1272
Hin1II CATG 5 cut(s) 409, 938, 1054, 1220, 1226
Hin6I GCGC 1 cut(s) 1270
HinP1I GCGC 1 cut(s) 1270
HinfI GANTC 6 cut(s) 216, 262, 571, 590, 905, 1255
HpaII CCGG 3 cut(s) 734, 911, 1155
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 3 cut(s) 358, 436, 1143
Hpy188I TCNGA 2 cut(s) 198, 623
Hpy8I GTNNAC 3 cut(s) 358, 436, 1143
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 5 cut(s) 185, 641, 833, 1161, 1251
HpyCH4III ACNGT 2 cut(s) 313, 932
HpyCH4IV ACGT 4 cut(s) 92, 532, 858, 1183
HpyCH4V TGCA 8 cut(s) 358, 376, 539, 546, 723, 938, 1054, 1267
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 142, 536, 574, 977, 1124
HpyF3I CTNAG 2 cut(s) 620, 999
HpySE526I ACGT 4 cut(s) 92, 532, 858, 1183
Hsp92II CATG 5 cut(s) 409, 938, 1054, 1220, 1226
HspAI GCGC 1 cut(s) 1270
Ksp22I TGATCA 2 cut(s) 328, 781
Kzo9I GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
LmnI GCTCC 3 cut(s) 4, 627, 991
Lsp1109I GCAGC 5 cut(s) 60, 132, 530, 640, 1279
LweI GCATC 2 cut(s) 145, 1281
MaeI CTAG 2 cut(s) 74, 981
MaeII ACGT 4 cut(s) 92, 532, 858, 1183
MaeIII GTNAC 2 cut(s) 488, 1003
MalI GATC 7 cut(s) 44, 55, 101, 330, 783, 1011, 1021
MbiI CCGCTC 1 cut(s) 7
MboI GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
MboII GAAGA 4 cut(s) 61, 599, 703, 1269
MhlI GDGCHC 2 cut(s) 360, 988
MluCI AATT 9 cut(s) 161, 397, 441, 561, 681, 848, 1014, 1055, 1081
MlyI GAGTC 3 cut(s) 271, 580, 599
MmeI TCCRAC 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 298
MseI TTAA 7 cut(s) 111, 317, 518, 647, 879, 1059, 1085
MslI CAYNNNNRTG 1 cut(s) 1221
MspA1I CMGCKG 4 cut(s) 51, 145, 998, 1196
MspI CCGG 3 cut(s) 734, 911, 1155
MspR9I CCNGG 2 cut(s) 734, 918
MvaI CCWGG 1 cut(s) 918
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 6 cut(s) 45, 142, 536, 574, 977, 1124
NciI CCSGG 1 cut(s) 734
NdeII GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
NlaIII CATG 5 cut(s) 409, 938, 1054, 1220, 1226
NlaIV GGNNCC 6 cut(s) 258, 526, 629, 915, 1159, 1172
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 488, 1003
NspI RCATGY 1 cut(s) 1054
PaeI GCATGC 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 216, 905, 1255
PflFI GACNNNGTC 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 916
PkrI GCNGC 7 cut(s) 20, 38, 50, 147, 545, 655, 1269
PleI GAGTC 3 cut(s) 270, 579, 598
PpsI GAGTC 3 cut(s) 270, 579, 598
Ppu21I YACGTR 1 cut(s) 859
PpuMI RGGWCCY 1 cut(s) 1238
Psp5II RGGWCCY 1 cut(s) 1238
Psp6I CCWGG 1 cut(s) 916
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 6 cut(s) 258, 526, 629, 915, 1159, 1172
PspPI GGNCC 3 cut(s) 257, 870, 1238
PspPPI RGGWCCY 1 cut(s) 1238
PstI CTGCAG 1 cut(s) 1269
PsyI GACNNNGTC 1 cut(s) 261
PvuII CAGCTG 2 cut(s) 145, 998
RsaI GTAC 2 cut(s) 26, 884
RsaNI GTAC 2 cut(s) 25, 883
RseI CAYNNNNRTG 1 cut(s) 1221
SaqAI TTAA 7 cut(s) 111, 317, 518, 647, 879, 1059, 1085
SatI GCNGC 7 cut(s) 19, 37, 49, 146, 544, 654, 1268
Sau3AI GATC 7 cut(s) 42, 53, 99, 328, 781, 1009, 1019
Sau96I GGNCC 3 cut(s) 257, 870, 1238
SchI GAGTC 3 cut(s) 271, 580, 599
ScrFI CCNGG 2 cut(s) 734, 918
SduI GDGCHC 2 cut(s) 360, 988
SfaNI GCATC 2 cut(s) 145, 1281
SfcI CTRYAG 1 cut(s) 1265
SinI GGWCC 3 cut(s) 257, 870, 1238
SmiI ATTTAAAT 1 cut(s) 1060
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 3 cut(s) 266, 305, 1162
SmoI CTYRAG 3 cut(s) 266, 305, 1162
SnaBI TACGTA 1 cut(s) 859
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 9 cut(s) 161, 397, 441, 561, 681, 848, 1014, 1055, 1081
SsiI CCGC 9 cut(s) 7, 18, 37, 51, 189, 528, 577, 1048, 1194
SspI AATATT 1 cut(s) 1114
SspMI CTAG 2 cut(s) 74, 981
StyD4I CCNGG 2 cut(s) 732, 916
SwaI ATTTAAAT 1 cut(s) 1060
TaaI ACNGT 2 cut(s) 313, 932
TaiI ACGT 4 cut(s) 95, 535, 861, 1186
TaqI TCGA 7 cut(s) 96, 246, 362, 418, 469, 1012, 1244
TaqII GACCGA 1 cut(s) 274
TasI AATT 9 cut(s) 161, 397, 441, 561, 681, 848, 1014, 1055, 1081
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 21, 39
TfiI GAWTC 3 cut(s) 216, 905, 1255
Tru1I TTAA 7 cut(s) 111, 317, 518, 647, 879, 1059, 1085
Tru9I TTAA 7 cut(s) 111, 317, 518, 647, 879, 1059, 1085
TscAI CASTG 5 cut(s) 777, 951, 1039, 1216, 1269
TseFI GTSAC 2 cut(s) 488, 1003
TseI GCWGC 5 cut(s) 48, 145, 543, 653, 1267
Tsp45I GTSAC 2 cut(s) 488, 1003
TspDTI ATGAA 3 cut(s) 861, 1137, 1137
TspGWI ACGGA 3 cut(s) 624, 809, 1128
TspRI CASTG 5 cut(s) 777, 951, 1039, 1216, 1269
Tth111I GACNNNGTC 1 cut(s) 261
VneI GTGCAC 1 cut(s) 356
VpaK11BI GGWCC 3 cut(s) 257, 870, 1238
XagI CCTNNNNNAGG 1 cut(s) 1165
XapI RAATTY 3 cut(s) 681, 848, 1081
XceI RCATGY 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 1142
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 2 cut(s) 74, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.