Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

14382819 .. 14385465

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCTAAGAAACGGGGACTTTCGCTGGAGGAGAAACGAGAGAAGATGCTTCAGATATTCTATGAGTCTCAAGACTTCTTCCTACTAAAGGAACTTGAGAAGATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTTATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTATCTACTTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAACTTAGGAGTGTTCGCCAGAAACTTGAATCTGATCTTCAGGGTAGTAACAAAAGGTTAGCAGAACTTGTTGATCAGTGTGAGGCCCTAAAGAAGGGAAGGGAAGAATCGGAGGAACGAACAGAGGCCTTGACGCAACTCAAAGATATTGAAAAGAAACACAAAGATCTGAAGAACGAGATGGTACAATTTGCTGACAACGATCCAGCTACTTTGGAGGCAAAGAGGAATGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACAGATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAGGCGGGAATCACTGAGGACTTTGATTACATAGAGTTATCATCATTCCCTTTGAGCTCATCCCATGAAGCTGATACCGCAAAGCAGCTAGTACAAGATGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

230

Amino Acids

26.4

Weight (kDa)

5.14

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	1 - 59	1.3e-25	Mnd1 HTH domain
LZ3wCH	PF18517	135 - 191	9.5e-21	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	590, 663
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	3 cut(s)	35, 260, 428
AfaI	GTAC	2 cut(s)	423, 678
AfiI	CCNNNNNNNGG	4 cut(s)	88, 116, 331, 559
AgsI	TTSAA	4 cut(s)	266, 389, 476, 540
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	7 cut(s)	225, 446, 568, 642, 656, 673, 689
AluI	AGCT	7 cut(s)	225, 446, 568, 642, 656, 673, 689
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	4 cut(s)	107, 321, 363, 555
ApeKI	GCWGC	1 cut(s)	670
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	107, 322
AsuHPI	GGTGA	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	3 cut(s)	97, 412, 495
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	569, 674
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	107, 322
BmiI	GGNNCC	2 cut(s)	108, 215
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	54, 116
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	552, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 116, 331, 559
Bse1I	ACTGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	552, 558
BseGI	GGATG	1 cut(s)	644
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	88, 116, 331, 559
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	682
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	4 cut(s)	109, 323, 365, 557
BsiHKAI	GWGCWC	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	4 cut(s)	88, 116, 331, 559
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	109, 323, 365, 557
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	5 cut(s)	169, 271, 310, 403, 439
BspACI	CCGC	2 cut(s)	590, 663
BspANI	GGCC	4 cut(s)	109, 323, 365, 557
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	108, 215
BspPI	GGATC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	552, 558
BssMI	GATC	5 cut(s)	169, 271, 310, 403, 439
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	4 cut(s)	6, 242, 600, 690
BstENI	CCTNNNNNAGG	2 cut(s)	86, 329
BstF5I	GGATG	1 cut(s)	644
BstKTI	GATC	5 cut(s)	172, 274, 313, 406, 442
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	5 cut(s)	169, 271, 310, 403, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 231, 662
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	109, 323, 365, 557
BtsCI	GGATG	1 cut(s)	644
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	3 cut(s)	320, 521, 597
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	107, 322
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	422, 677
CviAII	CATG	1 cut(s)	650
CviQI	GTAC	2 cut(s)	422, 677
DdeI	CTNAG	4 cut(s)	6, 242, 600, 690
DpnI	GATC	5 cut(s)	171, 273, 312, 405, 441
DpnII	GATC	5 cut(s)	169, 271, 310, 403, 439
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	35, 260, 428
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	2 cut(s)	86, 329
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	1 cut(s)	653
FaiI	YATR	4 cut(s)	63, 580, 617, 651
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	1 cut(s)	649
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	671
FokI	GGATG	1 cut(s)	631
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	671
FspBI	CTAG	2 cut(s)	569, 674
GluI	GCNGC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	4 cut(s)	109, 323, 365, 557
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	4 cut(s)	65, 266, 344, 594
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	4 cut(s)	54, 271, 349, 408
Hpy188III	TCNNGA	2 cut(s)	71, 151
HpyAV	CCTTC	4 cut(s)	109, 227, 325, 330
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 231, 662
HpyF3I	CTNAG	4 cut(s)	6, 242, 600, 690
Hsp92II	CATG	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	169, 271, 310, 403, 439
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	569, 674
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	5 cut(s)	171, 273, 312, 405, 441
MboI	GATC	5 cut(s)	169, 271, 310, 403, 439
MboII	GAAGA	8 cut(s)	55, 70, 112, 124, 266, 353, 421, 508
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	4 cut(s)	123, 195, 425, 471
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	22, 313, 343, 355, 448, 456, 580, 595
MspA1I	CMGCKG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	222, 231, 662
NdeII	GATC	5 cut(s)	169, 271, 310, 403, 439
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	2 cut(s)	108, 215
PceI	AGGCCT	1 cut(s)	365
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	266, 344, 594
PkrI	GCNGC	1 cut(s)	672
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	552
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	108, 215
PspPI	GGNCC	2 cut(s)	107, 322
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	2 cut(s)	423, 678
RsaNI	GTAC	2 cut(s)	422, 677
SacI	GAGCTC	1 cut(s)	644
SatI	GCNGC	1 cut(s)	671
Sau3AI	GATC	5 cut(s)	169, 271, 310, 403, 439
Sau96I	GGNCC	2 cut(s)	107, 322
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	8 cut(s)	227, 296, 448, 570, 644, 658, 675, 691
SfaNI	GCATC	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	69, 95
SmoI	CTYRAG	2 cut(s)	69, 95
Sse9I	AATT	4 cut(s)	123, 195, 425, 471
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	590, 663
SspMI	CTAG	2 cut(s)	569, 674
SstI	GAGCTC	1 cut(s)	644
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	558
TaqI	TCGA	1 cut(s)	162
TasI	AATT	4 cut(s)	123, 195, 425, 471
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	3 cut(s)	266, 344, 594
TscAI	CASTG	3 cut(s)	320, 528, 604
TseI	GCWGC	1 cut(s)	670
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	3 cut(s)	320, 528, 604
XagI	CCTNNNNNAGG	2 cut(s)	86, 329
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	2 cut(s)	569, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.