Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Reverse (-)

89702 .. 94109

Gene Structure 4408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004296.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgcttgcggacgctcttagtcctaatattatgaacactcttagttcattgattacgaacgctcttagtttgtttattatgaacactcttagttcattgattatgaacgctcttagcgtgatggggcagagcttgcagcagtgtcggatacgcggggcagtagggactgcagtggcaacgggtttgcaagacagcagcgatgcggggcagcagcaaggcagcatgtcggttgcggaaggcaagcgcacgggttgctgcgcgcggagggcagattgcaggagagcagacgctagcaggtggtgcgctggggcagcgagcgctggggctagttggagctgcgggggcagcaggcatagggctgcagggctagggcttgcgacagatttgtcgaagaaaagaggactttcgttggaggagaagcgtgagaagatgctccagatcttctacgattctcaggatttctttcttctgaaggagcttgagaagtcgggcccgaagaaaggtgttatttctcagtctgtgaaagatgtgatccaaagcttggtggatgatgacctcgttttcaaagacaagattggaacctctgtctacttttggagtctccctagctctgctgggaatcagctaaggactgtgtatagcagacttgaatctgacctgcagagcagtaagaagcggcatgtagaacttgttgatcagtgtaatgcgctgaagaagggacgagaggaatctgatgaacgagaggaggccttagcggagctaaaagagattgagctgaagtacaataagctgaaggaagagatggggcagtatgcagataatgatccagctgccttggaagcaatgaaaaatgcaattgaagttgcccatgcagcagctaatcgatggacagacaatattttcacggtgcgtcagtggtgctcaaataacttccagtcagccaaagagcagcttgaaaacatgtacaaggaggttggaataacagaagactttgactatctggagatgtcaccagttccactgagctcagttggtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

346

Amino Acids

38.02

Weight (kDa)

5.52

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	285
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc36I	ACCTGC	2 cut(s)	285, 666
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	3 cut(s)	153, 260, 262
AciI	CCGC	8 cut(s)	8, 153, 203, 233, 262, 339, 676, 755
AclWI	GGATC	2 cut(s)	526, 818
AcuI	CTGAAG	4 cut(s)	491, 731, 797, 812
AfaI	GTAC	2 cut(s)	782, 965
AfeI	AGCGCT	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	500, 541
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	4 cut(s)	565, 650, 860, 956
Alw21I	GWGCWC	2 cut(s)	923, 1028
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	2 cut(s)	526, 818
Aor51HI	AGCGCT	1 cut(s)	319
AoxI	GGCC	2 cut(s)	490, 747
ApaI	GGGCCC	1 cut(s)	494
AspLEI	GCGC	6 cut(s)	246, 260, 262, 305, 320, 709
AspS9I	GGNCC	2 cut(s)	490, 491
AsuHPI	GGTGA	1 cut(s)	1002
AsuNHI	GCTAGC	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	494, 1028
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	2 cut(s)	923, 1028
BccI	CCATC	3 cut(s)	115, 796, 879
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	4 cut(s)	291, 327, 368, 606
BfmI	CTRYAG	3 cut(s)	168, 360, 659
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	2 cut(s)	285, 666
BfuI	GTATCC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	490, 491
BmiI	GGNNCC	2 cut(s)	492, 580
BmsI	GCATC	2 cut(s)	190, 420
BmtI	GCTAGC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	2 cut(s)	419, 1022
Bpu10I	CCTNAGC	2 cut(s)	626, 751
BpuEI	CTTGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	883
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	834
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 541
Bse1I	ACTGG	2 cut(s)	934, 1013
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	822
BseCI	ATCGAT	1 cut(s)	883
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	2 cut(s)	500, 541
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	467, 527, 1013, 1041
BseNI	ACTGG	2 cut(s)	934, 1013
BsePI	GCGCGC	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	428, 758
BseSI	GKGCMC	1 cut(s)	494
BseYI	CCCAGC	3 cut(s)	305, 320, 614
Bsh1236I	CGCG	3 cut(s)	153, 260, 262
BshFI	GGCC	2 cut(s)	492, 749
BshVI	ATCGAT	1 cut(s)	883
BsiHKAI	GWGCWC	2 cut(s)	923, 1028
BslFI	GGGAC	2 cut(s)	178, 732
BslI	CCNNNNNNNGG	2 cut(s)	500, 541
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	2 cut(s)	178, 732
BsnI	GGCC	2 cut(s)	492, 749
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	3 cut(s)	494, 923, 1028
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	4 cut(s)	438, 531, 694, 823
BspACI	CCGC	8 cut(s)	8, 153, 203, 233, 262, 339, 676, 755
BspANI	GGCC	2 cut(s)	492, 749
BspCNI	CTCAG	4 cut(s)	466, 526, 1014, 1040
BspDI	ATCGAT	1 cut(s)	883
BspFNI	CGCG	3 cut(s)	153, 260, 262
BspLI	GGNNCC	2 cut(s)	492, 580
BspMAI	CTGCAG	3 cut(s)	172, 364, 663
BspMI	ACCTGC	2 cut(s)	285, 666
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	526, 818
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	2 cut(s)	934, 1013
BssECI	CCNNGG	1 cut(s)	834
BssHII	GCGCGC	1 cut(s)	258
BssMI	GATC	4 cut(s)	438, 531, 694, 823
BssT1I	CCWWGG	1 cut(s)	834
Bst4CI	ACNGT	2 cut(s)	634, 907
Bst6I	CTCTTC	1 cut(s)	792
BstAPI	GCANNNNNTGC	3 cut(s)	133, 252, 300
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	8 cut(s)	6, 134, 242, 260, 292, 316, 350, 375
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	3 cut(s)	153, 260, 262
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	6 cut(s)	246, 260, 262, 305, 320, 709
BstKTI	GATC	4 cut(s)	441, 534, 697, 826
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	4 cut(s)	438, 531, 694, 823
BstNSI	RCATGY	3 cut(s)	226, 683, 964
BstSFI	CTRYAG	3 cut(s)	168, 360, 659
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	3 cut(s)	153, 260, 262
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	492, 749
BsuTUI	ATCGAT	1 cut(s)	883
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	146, 177
BtsIMutI	CAGTG	5 cut(s)	146, 177, 704, 920, 1019
BveI	ACCTGC	2 cut(s)	285, 666
Cac8I	GCNNGC	8 cut(s)	6, 134, 242, 260, 292, 316, 350, 375
CfoI	GCGC	6 cut(s)	246, 260, 262, 305, 320, 709
Cfr13I	GGNCC	2 cut(s)	490, 491
ClaI	ATCGAT	1 cut(s)	883
CseI	GACGC	3 cut(s)	20, 296, 899
Csp6I	GTAC	2 cut(s)	781, 964
CviAII	CATG	4 cut(s)	223, 680, 869, 961
CviQI	GTAC	2 cut(s)	781, 964
DpnI	GATC	4 cut(s)	440, 533, 696, 825
DpnII	GATC	4 cut(s)	438, 531, 694, 823
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Ecl136II	GAGCTC	1 cut(s)	1026
Eco130I	CCWWGG	1 cut(s)	834
Eco147I	AGGCCT	1 cut(s)	749
Eco24I	GRGCYC	2 cut(s)	494, 1028
Eco47III	AGCGCT	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	1026
Eco57I	CTGAAG	4 cut(s)	491, 731, 797, 812
EcoICRI	GAGCTC	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	2 cut(s)	494, 1028
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	4 cut(s)	226, 683, 872, 964
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	2 cut(s)	178, 732
FatI	CATG	4 cut(s)	222, 679, 868, 960
FauI	CCCGC	3 cut(s)	146, 196, 332
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	588
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	2 cut(s)	494, 1028
FspBI	CTAG	4 cut(s)	291, 327, 368, 606
GlaI	GCGC	6 cut(s)	245, 259, 261, 304, 319, 708
GsaI	CCCAGC	3 cut(s)	309, 324, 618
GsuI	CTGGAG	2 cut(s)	419, 1022
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	492, 749
HgaI	GACGC	3 cut(s)	20, 296, 899
HhaI	GCGC	6 cut(s)	246, 260, 262, 305, 320, 709
Hin1II	CATG	4 cut(s)	226, 683, 872, 964
Hin6I	GCGC	6 cut(s)	244, 258, 260, 303, 318, 707
HinP1I	GCGC	6 cut(s)	244, 258, 260, 303, 318, 707
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	5 cut(s)	449, 598, 619, 650, 728
HphI	GGTGA	1 cut(s)	1002
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	4 cut(s)	147, 471, 655, 733
Hpy188III	TCNNGA	3 cut(s)	436, 455, 1001
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	4 cut(s)	230, 466, 709, 787
HpyCH4III	ACNGT	2 cut(s)	634, 907
HpyCH4V	TGCA	9 cut(s)	136, 170, 187, 276, 362, 661, 815, 854, 872
Hsp92II	CATG	4 cut(s)	226, 683, 872, 964
HspAI	GCGC	6 cut(s)	244, 258, 260, 303, 318, 707
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	438, 531, 694, 823
LmnI	GCTCC	4 cut(s)	333, 438, 475, 757
LweI	GCATC	2 cut(s)	190, 420
MaeI	CTAG	4 cut(s)	291, 327, 368, 606
MaeIII	GTNAC	1 cut(s)	1008
MalI	GATC	4 cut(s)	440, 533, 696, 825
MboI	GATC	4 cut(s)	438, 531, 694, 823
MboII	GAAGA	8 cut(s)	403, 433, 439, 458, 508, 724, 809, 998
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	3 cut(s)	494, 923, 1028
MluCI	AATT	1 cut(s)	855
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	4 cut(s)	125, 311, 390, 955
MnlI	CCTC	9 cut(s)	258, 392, 406, 566, 592, 718, 736, 739, 964
MspA1I	CMGCKG	1 cut(s)	830
MunI	CAATTG	1 cut(s)	855
MvnI	CGCG	3 cut(s)	153, 260, 262
NdeII	GATC	4 cut(s)	438, 531, 694, 823
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	226, 683, 872, 964
NlaIV	GGNNCC	2 cut(s)	492, 580
NmuCI	GTSAC	1 cut(s)	1008
NspI	RCATGY	3 cut(s)	226, 683, 964
PaqCI	CACCTGC	1 cut(s)	285
PauI	GCGCGC	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	749
PciI	ACATGT	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	449, 619, 650, 728
PflMI	CCANNNNNTGG	1 cut(s)	541
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PscI	ACATGT	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	1028
PspFI	CCCAGC	3 cut(s)	305, 320, 614
PspN4I	GGNNCC	2 cut(s)	492, 580
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	490, 491
PstI	CTGCAG	3 cut(s)	172, 364, 663
PsuI	RGATCY	1 cut(s)	438
PteI	GCGCGC	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	782, 965
RsaNI	GTAC	2 cut(s)	781, 964
SacI	GAGCTC	1 cut(s)	1028
Sau3AI	GATC	4 cut(s)	438, 531, 694, 823
Sau96I	GGNCC	2 cut(s)	490, 491
SchI	GAGTC	1 cut(s)	607
SduI	GDGCHC	3 cut(s)	494, 923, 1028
SfaNI	GCATC	2 cut(s)	190, 420
SfcI	CTRYAG	3 cut(s)	168, 360, 659
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	855
SseBI	AGGCCT	1 cut(s)	749
SsiI	CCGC	8 cut(s)	8, 153, 203, 233, 262, 339, 676, 755
SspI	AATATT	2 cut(s)	28, 898
SspMI	CTAG	4 cut(s)	291, 327, 368, 606
SstI	GAGCTC	1 cut(s)	1028
StuI	AGGCCT	1 cut(s)	749
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	2 cut(s)	634, 907
TaqI	TCGA	2 cut(s)	389, 883
TasI	AATT	1 cut(s)	855
TatI	WGTACW	2 cut(s)	780, 963
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	4 cut(s)	449, 619, 650, 728
TscAI	CASTG	5 cut(s)	146, 177, 704, 920, 1026
TseFI	GTSAC	1 cut(s)	1008
Tsp45I	GTSAC	1 cut(s)	1008
TspDTI	ATGAA	7 cut(s)	36, 47, 84, 95, 119, 750, 860
TspRI	CASTG	5 cut(s)	146, 177, 704, 920, 1026
Van91I	CCANNNNNTGG	1 cut(s)	541
XceI	RCATGY	3 cut(s)	226, 683, 964
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	4 cut(s)	291, 327, 368, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.