Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Reverse (-)

19523124 .. 19525828

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G215800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCGAAGAAGAGAGGTCTTTCGTTGGAAGAGAAGCGTGAGAAGATGCTTCAAATCTTTTACGACTCTCAAGATTTCTTCCTTCTAAAGGAGCTTGAGAAGTCAGGCCCAAAGAAAGGTGTTATTTCTCAGTCTGTGAAAGATGTGATCCAAAGTTTAGTGGATGATGACCTTGTTTTCAAAGACAAGATAGGAACCTCTGTGTATTTTTGGAGTCTTCCTAGCACTGCTGGAAACCAGCTTAGGAATGTGAATAGCAGACTTGAATCTGATCTCCAAAGCAGTAAGAAGCGTCATGCAGAACTTGTTGAACAGTGTAATGCCCTGAAGAAGGGACGTGAGGATTCTGAAGAACGAGATGAGGCCTTAGCTGATCTAAAAGCCATAGAGCTAAAGTATAATGAGCTGAAGGATGAGATGGCGCAGTATGCAGACAATGATCCAGCTGCCTTTGAAGCAATGAAGAAAGCAATTGAAGTTGCCCATACAGCAGCTAATCGATGGACAGACAACATTTTCACAGTGCGCCAGTGGTGTTCAAATAACTTTCCGCAGGCCAAAGAGCAGCTTGAGAACTTGTACAACGAGATTGGAATAACAGAGGACTTTGACTATATAGAGATGACACCAGCTCCACTGAGCTCAGTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

219

Amino Acids

24.98

Weight (kDa)

4.95

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	2 cut(s)	142, 434
AcuI	CTGAAG	3 cut(s)	347, 369, 428
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	88, 116, 331
AgsI	TTSAA	7 cut(s)	53, 181, 266, 311, 455, 476, 540
AjiI	CACGTC	1 cut(s)	338
Alw21I	GWGCWC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	142, 434
AoxI	GGCC	3 cut(s)	106, 363, 555
ApeKI	GCWGC	3 cut(s)	446, 491, 565
AseI	ATTAAT	1 cut(s)	651
AspLEI	GCGC	2 cut(s)	424, 528
AspS9I	GGNCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	433, 503, 577
BccI	CCATC	2 cut(s)	412, 495
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	447, 492, 566
BlsI	GCNGC	3 cut(s)	448, 493, 567
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	242, 367
BpuEI	CTTGAG	3 cut(s)	54, 116, 590
Bsa29I	ATCGAT	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 116, 331
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	499
BseGI	GGATG	2 cut(s)	169, 418
BseLI	CCNNNNNNNGG	3 cut(s)	88, 116, 331
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	143, 629, 657
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	3 cut(s)	433, 503, 577
BshFI	GGCC	3 cut(s)	108, 365, 557
BshVI	ATCGAT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	88, 116, 331
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	108, 365, 557
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	147, 271, 373, 439
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	3 cut(s)	108, 365, 557
BspCNI	CTCAG	3 cut(s)	142, 630, 656
BspDI	ATCGAT	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	142, 434
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	529
BssMI	GATC	4 cut(s)	147, 271, 373, 439
Bst4CI	ACNGT	2 cut(s)	315, 523
Bst6I	CTCTTC	2 cut(s)	5, 24
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	5 cut(s)	129, 242, 367, 638, 643
BstENI	CCTNNNNNAGG	2 cut(s)	86, 329
BstF5I	GGATG	2 cut(s)	169, 418
BstHHI	GCGC	2 cut(s)	424, 528
BstKTI	GATC	4 cut(s)	150, 274, 376, 442
BstMBI	GATC	4 cut(s)	147, 271, 373, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 455, 488
BstV1I	GCAGC	3 cut(s)	433, 503, 577
BstV2I	GAAGAC	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	108, 365, 557
BsuTUI	ATCGAT	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	169, 418
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	5 cut(s)	225, 320, 528, 536, 635
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	424, 528
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	499
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	5 cut(s)	129, 242, 367, 638, 643
DpnI	GATC	4 cut(s)	149, 273, 375, 441
DpnII	GATC	4 cut(s)	147, 271, 373, 439
Eam1104I	CTCTTC	2 cut(s)	5, 24
EarI	CTCTTC	2 cut(s)	5, 24
Ecl136II	GAGCTC	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	347, 369, 428
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	2 cut(s)	86, 329
EcoT38I	GRGCYC	1 cut(s)	644
FaeI	CATG	1 cut(s)	299
FaiI	YATR	7 cut(s)	297, 386, 399, 429, 486, 615, 617
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	447, 492, 566
FokI	GGATG	2 cut(s)	176, 425
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	447, 492, 566
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	423, 527
GluI	GCNGC	3 cut(s)	447, 492, 566
HaeIII	GGCC	3 cut(s)	108, 365, 557
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	424, 528
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	2 cut(s)	422, 526
HinP1I	GCGC	2 cut(s)	422, 526
HinfI	GANTC	4 cut(s)	65, 214, 266, 344
Hpy188I	TCNGA	2 cut(s)	271, 349
Hpy188III	TCNNGA	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	92, 325, 403
HpyCH4III	ACNGT	2 cut(s)	315, 523
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	299, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 455, 488
HpyF3I	CTNAG	5 cut(s)	129, 242, 367, 638, 643
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	2 cut(s)	422, 526
Kzo9I	GATC	4 cut(s)	147, 271, 373, 439
LmnI	GCTCC	2 cut(s)	91, 637
LpnPI	CCDG	8 cut(s)	90, 216, 251, 338, 456, 539, 542, 642
Lsp1109I	GCAGC	3 cut(s)	433, 503, 577
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	337
MalI	GATC	4 cut(s)	149, 273, 375, 441
MboI	GATC	4 cut(s)	147, 271, 373, 439
MboII	GAAGA	9 cut(s)	19, 22, 41, 55, 70, 209, 340, 362, 475
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	471, 652
MlyI	GAGTC	2 cut(s)	59, 223
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	8, 208, 334, 355, 595
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	428, 455, 488
NdeII	GATC	4 cut(s)	147, 271, 373, 439
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	266, 344
PkrI	GCNGC	3 cut(s)	448, 493, 567
PleI	GAGTC	2 cut(s)	59, 222
PpsI	GAGTC	2 cut(s)	59, 222
PshBI	ATTAAT	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	644
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	3 cut(s)	447, 492, 566
Sau3AI	GATC	4 cut(s)	147, 271, 373, 439
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	59, 223
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	36
SmlI	CTYRAG	3 cut(s)	69, 95, 569
SmoI	CTYRAG	3 cut(s)	69, 95, 569
Sse9I	AATT	2 cut(s)	471, 652
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	644
StuI	AGGCCT	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	315, 523
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	5, 499
TasI	AATT	2 cut(s)	471, 652
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	266, 344
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	5 cut(s)	232, 320, 528, 536, 642
TseI	GCWGC	3 cut(s)	446, 491, 565
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	5 cut(s)	232, 320, 528, 536, 642
VspI	ATTAAT	1 cut(s)	651
XagI	CCTNNNNNAGG	2 cut(s)	86, 329
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.