Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

6067961 .. 6069793

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGAAGAAAAGAGGACTTTCGTTGGAGGAGAAGCGTGAGAAGATGCTCCAGATCTTCTACGATTCTCAGGATTTCTTTCTTCTGAAGGAGCTTGAGAAGTCGGGCCCGAAGAAAGGTGTTATTTCTCAGTCTGTGAAAGATGTGATCCAAAGCTTGGTGGATGATGACCTCGTTTTCAAAGACAAGATTGGAACCTCTGTCTACTTTTGGAGTCTCCCTAGCTCTGCTGGGAATCAGCTAAGGACTGTGTATAGCAGACTTGAATCTGATCTGCAGAGCAGTAAGAAGCGGCATGTAGAACTTGTTGATCAGTGTAATGCGCTGAAGAAGGGACGAGAGGAATCTGCCTTAGCGGAGCTAAAAGAGATTGAGCTGAAGTACAATAAGCTGAAGGAAGAGATGGAGCAGTATGCAGATAATGATCCAGCTGCCTTGGAAGCAATGAAAAATGCAATTGAAGTTGCCCATGCAGCAGCTAATCGATGGACAGACAATATTTTCACGGTGCGTCAGTGGTGCTCAAATAACTTCCAGTCAGCCAAAGAGCAGCTTGAAAACATGTACAAGGAGGTTGGAATAACAGAAGACTTTGACTATCTGGAGATGTCACCAGTTCCACTGAGCTCAGTTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

213

Amino Acids

24.4

Weight (kDa)

5.12

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	16 - 74	4.2e-25	Mnd1 HTH domain
LZ3wCH	PF18517	145 - 201	6.7e-20	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	2 cut(s)	292, 356
AclWI	GGATC	2 cut(s)	142, 419
AcuI	CTGAAG	4 cut(s)	107, 347, 398, 413
AfaI	GTAC	2 cut(s)	383, 566
AfiI	CCNNNNNNNGG	2 cut(s)	116, 157
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	181, 266, 461, 557
Alw21I	GWGCWC	2 cut(s)	524, 629
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	142, 419
AoxI	GGCC	1 cut(s)	106
ApaI	GGGCCC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	431, 473, 476, 550
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	106, 107
AsuHPI	GGTGA	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	110, 629
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	524, 629
BbvI	GCAGC	4 cut(s)	418, 485, 488, 562
BccI	CCATC	2 cut(s)	397, 480
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	275
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	5 cut(s)	293, 432, 474, 477, 551
BlsI	GCNGC	5 cut(s)	294, 433, 475, 478, 552
BmgT120I	GGNCC	2 cut(s)	106, 107
BmiI	GGNNCC	2 cut(s)	108, 196
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	35, 623
Bpu10I	CCTNAGC	2 cut(s)	242, 352
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 157
Bse1I	ACTGG	2 cut(s)	535, 614
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	116, 157
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	4 cut(s)	83, 143, 614, 642
BseNI	ACTGG	2 cut(s)	535, 614
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	4 cut(s)	418, 485, 488, 562
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	524, 629
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	116, 157
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	108
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	110, 524, 629
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	54, 147, 271, 310, 424
BspACI	CCGC	2 cut(s)	292, 356
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	4 cut(s)	82, 142, 615, 641
BspDI	ATCGAT	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	108, 196
BspMAI	CTGCAG	1 cut(s)	279
BspPI	GGATC	2 cut(s)	142, 419
BsrDI	GCAATG	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	535, 614
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	5 cut(s)	54, 147, 271, 310, 424
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	250, 508
Bst6I	CTCTTC	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	69, 129, 242, 352, 623, 628
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	5 cut(s)	57, 150, 274, 313, 427
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	54, 147, 271, 310, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 473
BstNSI	RCATGY	2 cut(s)	299, 565
BstSFI	CTRYAG	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	4 cut(s)	418, 485, 488, 562
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	320, 521, 620
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	106, 107
ClaI	ATCGAT	1 cut(s)	484
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	382, 565
CviAII	CATG	3 cut(s)	296, 470, 562
CviQI	GTAC	2 cut(s)	382, 565
DdeI	CTNAG	6 cut(s)	69, 129, 242, 352, 623, 628
DpnI	GATC	5 cut(s)	56, 149, 273, 312, 426
DpnII	GATC	5 cut(s)	54, 147, 271, 310, 424
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	110, 629
Eco53kI	GAGCTC	1 cut(s)	627
Eco57I	CTGAAG	4 cut(s)	107, 347, 398, 413
EcoICRI	GAGCTC	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	2 cut(s)	110, 629
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	3 cut(s)	299, 473, 565
FaiI	YATR	5 cut(s)	255, 297, 414, 471, 563
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	295, 469, 561
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	293, 432, 474, 477, 551
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	2 cut(s)	110, 629
Fsp4HI	GCNGC	5 cut(s)	293, 432, 474, 477, 551
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	5 cut(s)	293, 432, 474, 477, 551
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	35, 623
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	299, 473, 565
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	5 cut(s)	65, 214, 235, 266, 344
HphI	GGTGA	1 cut(s)	603
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	87, 271
Hpy188III	TCNNGA	3 cut(s)	52, 71, 602
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	82, 325, 388
HpyCH4III	ACNGT	2 cut(s)	250, 508
HpyCH4V	TGCA	4 cut(s)	277, 416, 455, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 473
HpyF3I	CTNAG	6 cut(s)	69, 129, 242, 352, 623, 628
Hsp92II	CATG	3 cut(s)	299, 473, 565
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	54, 147, 271, 310, 424
LmnI	GCTCC	4 cut(s)	54, 91, 358, 406
LpnPI	CCDG	7 cut(s)	56, 65, 216, 441, 548, 587, 627
Lsp1109I	GCAGC	4 cut(s)	418, 485, 488, 562
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	5 cut(s)	56, 149, 273, 312, 426
MboI	GATC	5 cut(s)	54, 147, 271, 310, 424
MboII	GAAGA	8 cut(s)	19, 49, 55, 74, 124, 340, 410, 599
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	3 cut(s)	110, 524, 629
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	6, 556
MnlI	CCTC	6 cut(s)	8, 22, 182, 208, 334, 565
MspA1I	CMGCKG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	440, 473
NdeII	GATC	5 cut(s)	54, 147, 271, 310, 424
NlaIII	CATG	3 cut(s)	299, 473, 565
NlaIV	GGNNCC	2 cut(s)	108, 196
NmuCI	GTSAC	1 cut(s)	609
NspI	RCATGY	2 cut(s)	299, 565
PciI	ACATGT	1 cut(s)	561
PfeI	GAWTC	4 cut(s)	65, 235, 266, 344
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	294, 433, 475, 478, 552
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	108, 196
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	106, 107
PstI	CTGCAG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	383, 566
RsaNI	GTAC	2 cut(s)	382, 565
SacI	GAGCTC	1 cut(s)	629
SatI	GCNGC	5 cut(s)	293, 432, 474, 477, 551
Sau3AI	GATC	5 cut(s)	54, 147, 271, 310, 424
Sau96I	GGNCC	2 cut(s)	106, 107
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	3 cut(s)	110, 524, 629
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	456
SsiI	CCGC	2 cut(s)	292, 356
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	250, 508
TaqI	TCGA	2 cut(s)	5, 484
TasI	AATT	1 cut(s)	456
TatI	WGTACW	2 cut(s)	381, 564
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	4 cut(s)	65, 235, 266, 344
TscAI	CASTG	3 cut(s)	320, 521, 627
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	4 cut(s)	431, 473, 476, 550
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	1 cut(s)	461
TspRI	CASTG	3 cut(s)	320, 521, 627
Van91I	CCANNNNNTGG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	299, 565
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.