Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

5604689 .. 5607699

Gene Structure 3011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCGAAGAAAAGAGGACTTTCGTTGGAGGAGAAGCGCGAGAAGATGCTCCAGATCTTCTATGATTCTCAGGATTTCTTTCTTCTGAAGGAGCTTGAGAAGTCAGGCCCGAAGAAAGGTGTTATTTCTCAGTCTGTGAAAGATGTGATCCAAAGCTTGGTGGATGATGACCTCGTTTTCAAGGACAAGATTGGAACCTCTGTGTACTTTTGGAGTCTCCCTAGCTCTGCTGGGAATCAGCTAAGGACTGTGTATAGCAGACTTGAATCCGATCTGCAGAGCAGTAAGAAGCGGCATGTAGAACTTGTTGACCAGTGTAATGCGCTGAAGAAGGGACGAGAGGAATCTGATGAACGAGAGGAGGCCTTAGCTGAGCTAAAAGAAATTGAGCTAAAGTACAATAAGCTGAAGGAAGAGATGGGGCAGTATGCAGATAATGATCCAGCTGCCTTGGAAGCAATGAAGAATGCAATTGAAGTTGCCCATGCAGCAGCTAATCGATGGACTGACAACATTTTTACGGTGCGTCAGTGGTGCTCAAATAGCTTCCAGTCAGCCAAAGAGCAGCTTGAAAATATGTACAAGGAGGTTGGAATAACAGAAGACTTTGACTATCTGGAGATGTCACCAGTTCCAGTGAGCTCAGTTGTTGATCTCGGCCGTAAACGTGGCACCCATCAACACCATTGGTTGGAGAGTTTCCATGTTTTAGCACTAATTACAAGCCAGAGTGTCCCTCGTCTTCCTCCTCGAGTCTTTCTCCTTATAAATTTGATAGAATCAAGAATGGAGATGCTGAGACTTCACTTTTTGGTCATGGCGATTCTCTCTGCAGTCATCATTTCTCTTCTACTACCTTCCATCAATGCTCAGAGCCTCGCACCAGCTCCCGCCCCCACGAGTGATGGGGTAGCAGTTGATCAAGGAATTGCGTATGCCCTAATGGCATTTGCTCTGGTGCTCACCTATATCATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

327

Amino Acids

36.89

Weight (kDa)

5.7

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	16 - 74	8.7e-25	Mnd1 HTH domain
LZ3wCH	PF18517	150 - 206	5.9e-19	Leucine zipper with capping helix domain
AGP	PF06376	294 - 326	2.4e-14	Arabinogalactan peptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	671
AccB7I	CCANNNNNTGG	2 cut(s)	157, 691
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	292, 891
AclWI	GGATC	2 cut(s)	142, 434
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	769
AcuI	CTGAAG	3 cut(s)	107, 347, 428
AfaI	GTAC	3 cut(s)	206, 398, 581
AfiI	CCNNNNNNNGG	3 cut(s)	116, 157, 691
AgsI	TTSAA	4 cut(s)	181, 266, 476, 572
Alw21I	GWGCWC	3 cut(s)	539, 644, 963
Alw26I	GTCTC	2 cut(s)	221, 793
AlwI	GGATC	2 cut(s)	142, 434
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	106, 363, 658
ApeKI	GCWGC	4 cut(s)	446, 488, 491, 565
ApoI	RAATTY	1 cut(s)	769
AspLEI	GCGC	2 cut(s)	39, 325
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	618, 955
AvaI	CYCGRG	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	898
BbsI	GAAGAC	2 cut(s)	609, 734
Bbv12I	GWGCWC	3 cut(s)	539, 644, 963
BbvI	GCAGC	4 cut(s)	433, 500, 503, 577
BccI	CCATC	5 cut(s)	412, 495, 684, 869, 899
BceAI	ACGGC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	919
BcoDI	GTCTC	2 cut(s)	221, 793
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	2 cut(s)	275, 831
BglI	GCCNNNNNGGC	1 cut(s)	944
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	5 cut(s)	294, 448, 490, 493, 567
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	196, 673
BmsI	GCATC	2 cut(s)	36, 783
BpiI	GAAGAC	2 cut(s)	609, 734
BplI	GAGNNNNNCTC	4 cut(s)	721, 753, 744, 776
BpmI	CTGGAG	2 cut(s)	35, 638
Bpu10I	CCTNAGC	2 cut(s)	242, 367
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 157, 691
Bse1I	ACTGG	4 cut(s)	313, 550, 629, 635
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	3 cut(s)	116, 157, 691
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	6 cut(s)	83, 143, 363, 657, 788, 884
BseNI	ACTGG	4 cut(s)	313, 550, 629, 635
BseRI	GAGGAG	3 cut(s)	44, 374, 738
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	4 cut(s)	433, 500, 503, 577
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	3 cut(s)	108, 365, 660
BshNI	GGYRCC	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	3 cut(s)	539, 644, 963
BsiHKCI	CYCGRG	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	348, 719
BslI	CCNNNNNNNGG	3 cut(s)	116, 157, 691
BsmAI	GTCTC	2 cut(s)	221, 793
BsmFI	GGGAC	2 cut(s)	348, 719
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	108, 365, 660
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	539, 644, 963
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	2 cut(s)	292, 891
BspANI	GGCC	3 cut(s)	108, 365, 660
BspCNI	CTCAG	6 cut(s)	82, 142, 364, 656, 789, 883
BspDI	ATCGAT	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	196, 673
BspMAI	CTGCAG	2 cut(s)	279, 835
BspPI	GGATC	2 cut(s)	142, 434
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	4 cut(s)	313, 550, 629, 635
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
BssSI	CACGAG	1 cut(s)	898
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	898
Bst4CI	ACNGT	2 cut(s)	250, 523
Bst6I	CTCTTC	2 cut(s)	408, 852
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	8 cut(s)	69, 129, 242, 367, 372, 643, 797, 870
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 325
BstKTI	GATC	6 cut(s)	57, 150, 274, 442, 655, 922
BstMAI	GTCTC	2 cut(s)	221, 793
BstMBI	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 488, 543, 944
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	2 cut(s)	275, 831
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	433, 500, 503, 577
BstV2I	GAAGAC	2 cut(s)	609, 734
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BstZI	CGGCCG	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	108, 365, 660
BsuTUI	ATCGAT	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	4 cut(s)	320, 536, 642, 976
CfoI	GCGC	2 cut(s)	39, 325
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	499
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	3 cut(s)	205, 397, 580
CviAII	CATG	4 cut(s)	296, 485, 704, 817
CviQI	GTAC	3 cut(s)	205, 397, 580
DdeI	CTNAG	8 cut(s)	69, 129, 242, 367, 372, 643, 797, 870
DpnI	GATC	6 cut(s)	56, 149, 273, 441, 654, 921
DpnII	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
EaeI	YGGCCR	1 cut(s)	658
EagI	CGGCCG	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	408, 852
EarI	CTCTTC	2 cut(s)	408, 852
Ecl136II	GAGCTC	1 cut(s)	642
EclXI	CGGCCG	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	644
Eco52I	CGGCCG	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	107, 347, 428
Eco88I	CYCGRG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	4 cut(s)	299, 488, 707, 820
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	2 cut(s)	348, 719
FatI	CATG	4 cut(s)	295, 484, 703, 816
FauI	CCCGC	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	38, 324
GluI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	35, 638
HaeIII	GGCC	3 cut(s)	108, 365, 660
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	2 cut(s)	39, 325
Hin1II	CATG	4 cut(s)	299, 488, 707, 820
Hin6I	GCGC	2 cut(s)	37, 323
HinP1I	GCGC	2 cut(s)	37, 323
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	8 cut(s)	65, 214, 235, 266, 344, 753, 779, 823
HphI	GGTGA	2 cut(s)	618, 955
Hpy166II	GTNNAC	3 cut(s)	205, 310, 665
Hpy188I	TCNGA	4 cut(s)	87, 271, 349, 873
Hpy188III	TCNNGA	4 cut(s)	52, 71, 617, 783
Hpy8I	GTNNAC	3 cut(s)	205, 310, 665
HpyAV	CCTTC	4 cut(s)	82, 325, 403, 867
HpyCH4III	ACNGT	2 cut(s)	250, 523
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	277, 431, 470, 488, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 488, 543, 944
HpyF3I	CTNAG	8 cut(s)	69, 129, 242, 367, 372, 643, 797, 870
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	299, 488, 707, 820
HspAI	GCGC	2 cut(s)	37, 323
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
LmnI	GCTCC	3 cut(s)	54, 91, 892
Lsp1109I	GCAGC	4 cut(s)	433, 500, 503, 577
LweI	GCATC	2 cut(s)	36, 783
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	6 cut(s)	56, 149, 273, 441, 654, 921
MboI	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	3 cut(s)	539, 644, 963
MluCI	AATT	5 cut(s)	384, 471, 717, 769, 927
MlyI	GAGTC	2 cut(s)	223, 762
MmeI	TCCRAC	3 cut(s)	6, 571, 672
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	455, 488, 543, 944
NdeII	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
NlaIII	CATG	4 cut(s)	299, 488, 707, 820
NlaIV	GGNNCC	2 cut(s)	196, 673
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	624
NspI	RCATGY	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	365
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	6 cut(s)	65, 235, 266, 344, 779, 823
PflMI	CCANNNNNTGG	2 cut(s)	157, 691
PkrI	GCNGC	5 cut(s)	294, 448, 490, 493, 567
PleI	GAGTC	2 cut(s)	222, 761
PpsI	GAGTC	2 cut(s)	222, 761
PsiI	TTATAA	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	196, 673
PspPI	GGNCC	1 cut(s)	107
PspXI	VCTCGAGB	1 cut(s)	750
PstI	CTGCAG	2 cut(s)	279, 835
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	206, 398, 581
RsaNI	GTAC	3 cut(s)	205, 397, 580
SacI	GAGCTC	1 cut(s)	644
SatI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
Sau3AI	GATC	6 cut(s)	54, 147, 271, 439, 652, 919
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	223, 762
SduI	GDGCHC	3 cut(s)	539, 644, 963
SfaNI	GCATC	2 cut(s)	36, 783
SfcI	CTRYAG	2 cut(s)	275, 831
Sfr274I	CTCGAG	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	95, 750
SmoI	CTYRAG	2 cut(s)	95, 750
Sse9I	AATT	5 cut(s)	384, 471, 717, 769, 927
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	292, 891
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	644
StuI	AGGCCT	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	250, 523
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	5, 499, 751
TasI	AATT	5 cut(s)	384, 471, 717, 769, 927
TatI	WGTACW	3 cut(s)	204, 396, 579
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	6 cut(s)	65, 235, 266, 344, 779, 823
TscAI	CASTG	3 cut(s)	320, 536, 642
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	4 cut(s)	446, 488, 491, 565
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	2 cut(s)	366, 476
TspRI	CASTG	3 cut(s)	320, 536, 642
Van91I	CCANNNNNTGG	2 cut(s)	157, 691
XapI	RAATTY	1 cut(s)	769
XceI	RCATGY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	750
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.