Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

16049459 .. 16051850

Gene Structure 2392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1201700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCGAAGAAACGAGGTCTTTCGTTGGACGAGAAGCGTGAGAAGATGCTTCAGATCTTCTACGATTCTCAAGATTTCTTCCTTCTAAAGGAGCTTGAGAAGTCAGGGCCAAAGAAAGGTGTAATCTCTCAGTCTGTGAAAGATGTGATTCAGAGTTTAGTGGATGATGATCTTGTTTTCAAAGACAAGATAGGAACCTCCGTGTATTTTTGGAGTCTTCCTAGCACTGCTGGAAATCAGCTTAGGAATGTGTATAGCAGGCTTGAGTCGGATCTCAAAAGCAGTAAGAAGCGTCATGCAGAACTCATTGACCAGTGTAATGCACTGAAGAAGGGACGAGAGGATTCTGACGAGCGAGATGAGGCCTTAGCTGAACTGAAAGCCATAGAGCTAAAGCATATTGAGCTGAAGGATGAGGTGGCGCAGTACGCAGACAATGACCCAGCCGCCTTCGAAGAGATGAAGAAAGAAATTGAAGTTGCCCACTCAGCAGCTAATCGATGGACAGACAACATCTTCACAGTGCGTCAATGGTGTGCAAATAATTTCCCACAGGCCAAAGAGCAGCTCGAAAACTTGTACAACGAGATTGGAATAACGGAGGATTTTGACTATCTGGAGATGGCACCGGTTCCACTGAGCTCAGTTGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

219

Amino Acids

24.93

Weight (kDa)

4.96

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	16 - 74	4.4e-25	Mnd1 HTH domain
LZ3wCH	PF18517	150 - 206	2.8e-21	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	279
AcuI	CTGAAG	3 cut(s)	35, 347, 428
AfaI	GTAC	2 cut(s)	428, 581
AfiI	CCNNNNNNNGG	2 cut(s)	88, 116
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	181, 476
AluBI	AGCT	8 cut(s)	94, 241, 371, 391, 406, 494, 568, 642
AluI	AGCT	8 cut(s)	94, 241, 371, 391, 406, 494, 568, 642
Alw21I	GWGCWC	1 cut(s)	644
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	3 cut(s)	107, 363, 555
ApeKI	GCWGC	2 cut(s)	491, 565
AsiGI	ACCGGT	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	503, 577
BccI	CCATC	2 cut(s)	495, 616
BfaI	CTAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	3 cut(s)	447, 492, 566
BlsI	GCNGC	3 cut(s)	448, 493, 567
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	3 cut(s)	196, 627, 633
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	2 cut(s)	242, 367
Bpu14I	TTCGAA	1 cut(s)	453
BpuEI	CTTGAG	3 cut(s)	54, 116, 284
Bsa29I	ATCGAT	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 116
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	499
BseGI	GGATG	2 cut(s)	169, 418
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	88, 116
BseMII	CTCAG	4 cut(s)	143, 501, 629, 657
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	503, 577
BseYI	CCCAGC	1 cut(s)	442
BshFI	GGCC	3 cut(s)	109, 365, 557
BshNI	GGYRCC	1 cut(s)	625
BshTI	ACCGGT	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	88, 116
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	109, 365, 557
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	54, 169, 271
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	3 cut(s)	109, 365, 557
BspCNI	CTCAG	4 cut(s)	142, 500, 630, 656
BspDI	ATCGAT	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	196, 627, 633
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	628
BssMI	GATC	3 cut(s)	54, 169, 271
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	579
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	6 cut(s)	129, 242, 367, 487, 638, 643
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	169, 418
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	57, 172, 274
BstMBI	GATC	3 cut(s)	54, 169, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 428, 488
BstV1I	GCAGC	2 cut(s)	503, 577
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	54, 271
BstYI	RGATCY	2 cut(s)	54, 271
Bsu15I	ATCGAT	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	109, 365, 557
BsuTUI	ATCGAT	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	169, 418
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	5 cut(s)	225, 320, 323, 528, 635
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	499
CseI	GACGC	2 cut(s)	281, 515
Csp6I	GTAC	2 cut(s)	427, 580
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	2 cut(s)	427, 580
DdeI	CTNAG	6 cut(s)	129, 242, 367, 487, 638, 643
DpnI	GATC	3 cut(s)	56, 171, 273
DpnII	GATC	3 cut(s)	54, 169, 271
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	35, 347, 428
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	644
FaeI	CATG	1 cut(s)	299
FaiI	YATR	4 cut(s)	255, 297, 386, 399
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	447, 492, 566
FokI	GGATG	2 cut(s)	176, 425
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	447, 492, 566
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	447, 492, 566
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	3 cut(s)	109, 365, 557
HapII	CCGG	1 cut(s)	629
HgaI	GACGC	2 cut(s)	281, 515
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	5 cut(s)	65, 148, 214, 266, 344
HpaII	CCGG	1 cut(s)	629
Hpy188I	TCNGA	4 cut(s)	54, 153, 271, 349
Hpy188III	TCNNGA	2 cut(s)	71, 617
HpyAV	CCTTC	4 cut(s)	92, 325, 403, 460
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	3 cut(s)	299, 323, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 428, 488
HpyF3I	CTNAG	6 cut(s)	129, 242, 367, 487, 638, 643
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	54, 169, 271
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	90, 216, 244, 326, 456, 539, 602, 642
Lsp1109I	GCAGC	2 cut(s)	503, 577
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	222
MalI	GATC	3 cut(s)	56, 171, 273
MboI	GATC	3 cut(s)	54, 169, 271
MboII	GAAGA	9 cut(s)	19, 49, 55, 70, 209, 340, 467, 475, 508
MflI	RGATCY	2 cut(s)	54, 271
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	471, 544
MlyI	GAGTC	2 cut(s)	223, 275
MmeI	TCCRAC	2 cut(s)	6, 249
MnlI	CCTC	6 cut(s)	8, 208, 334, 355, 409, 595
MspI	CCGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	3 cut(s)	403, 428, 488
NdeII	GATC	3 cut(s)	54, 169, 271
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	3 cut(s)	196, 627, 633
NspV	TTCGAA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	65, 148, 344
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	448, 493, 567
PleI	GAGTC	2 cut(s)	222, 274
PpsI	GAGTC	2 cut(s)	222, 274
Psp124BI	GAGCTC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	196, 627, 633
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	54, 271
RsaI	GTAC	2 cut(s)	428, 581
RsaNI	GTAC	2 cut(s)	427, 580
SacI	GAGCTC	1 cut(s)	644
SatI	GCNGC	3 cut(s)	447, 492, 566
Sau3AI	GATC	3 cut(s)	54, 169, 271
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	223, 275
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	453
SmlI	CTYRAG	3 cut(s)	69, 95, 263
SmoI	CTYRAG	3 cut(s)	69, 95, 263
Sse9I	AATT	2 cut(s)	471, 544
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	644
StuI	AGGCCT	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	4 cut(s)	5, 453, 499, 570
TasI	AATT	2 cut(s)	471, 544
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	65, 148, 344
TscAI	CASTG	5 cut(s)	232, 320, 330, 528, 642
TseI	GCWGC	2 cut(s)	491, 565
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	2 cut(s)	190, 614
TspRI	CASTG	5 cut(s)	232, 320, 330, 528, 642
XagI	CCTNNNNNAGG	1 cut(s)	86
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.