Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

3537561 .. 3539855

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTCCAGATCTTCTACGATTCTCAGGATTTCTTTCTTCTGAAGGAGCTCGAGAAATCGGGGCCGAAGAAAGGTGTTATATCTCAGTCTGTGAAGGATGTGATCCAGAGTTTGGTGGATGATGATCTTGTTTTCAAGGACAAGATTGGAACCTCTGTGTATTTTTGGAGTCTCCCTAGCTCGGCTGGAAATCAGCTAAGGACTGTTTATAGCAGACTTGAATCTGAGCTGCAAAGCAGTAAGAAGCGGCATGTAGAACTTGTTGAACAGTGTAATGAGCTGAAGAAGGGAAGAGAAGAATCTGATGAGCGAGAGGAGGCCTTAGCTGAGCTTAAAGAGATTGAGCAACAGTACAACAAGCTGAAGGAAGAGTTGGGGCAGTATGCAGATAATGATCCAGCTGCCTTGGAAGCAATGAAGAATGCCATTGAAGTTGCCCATGCAGCAGCTAATCGATGGACAGACAACGTCTTCACAGTGCGCCAATGGTGCTCAAATAACTTCCAGTCGGCCAAAGAGCAGCTTGAACATATGTACAAGGAGGTTGGAATAACAGAAGACTTTGACTATCTGGAGATGTCACCCGTTCCACTGAGCTCAGTTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

204

Amino Acids

23.28

Weight (kDa)

4.73

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	1 - 59	3.8e-25	Mnd1 HTH domain
LZ3wCH	PF18517	135 - 191	1.2e-19	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	97, 389
AcoI	YGGCCR	1 cut(s)	510
AcuI	CTGAAG	3 cut(s)	62, 302, 383
AfaI	GTAC	2 cut(s)	353, 536
AfiI	CCNNNNNNNGG	3 cut(s)	71, 112, 181
AgsI	TTSAA	5 cut(s)	136, 221, 266, 431, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
Alw21I	GWGCWC	3 cut(s)	51, 494, 599
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	97, 389
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	62, 318, 510
ApeKI	GCWGC	5 cut(s)	229, 401, 443, 446, 520
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	573
AvaI	CYCGRG	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	51, 599
BbsI	GAAGAC	2 cut(s)	463, 564
Bbv12I	GWGCWC	3 cut(s)	51, 494, 599
BbvI	GCAGC	5 cut(s)	216, 388, 455, 458, 532
BccI	CCATC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	177
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	6 cut(s)	230, 248, 402, 444, 447, 521
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	6 cut(s)	231, 249, 403, 445, 448, 522
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	63, 151
BpiI	GAAGAC	2 cut(s)	463, 564
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	2 cut(s)	197, 322
Bpu1102I	GCTNAGC	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	454
BsaBI	GATNNNNATC	2 cut(s)	123, 393
BsaJI	CCNNGG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 112, 181
Bse1I	ACTGG	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	2 cut(s)	123, 393
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	103, 124
BseJI	GATNNNNATC	2 cut(s)	123, 393
BseLI	CCNNNNNNNGG	3 cut(s)	71, 112, 181
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	6 cut(s)	38, 98, 216, 318, 584, 612
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	5 cut(s)	216, 388, 455, 458, 532
BshFI	GGCC	3 cut(s)	64, 320, 512
BshVI	ATCGAT	1 cut(s)	454
BsiHKAI	GWGCWC	3 cut(s)	51, 494, 599
BsiHKCI	CYCGRG	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	71, 112, 181
BsmAI	GTCTC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	64, 320, 512
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	51, 494, 599
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	9, 102, 124, 394
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	3 cut(s)	64, 320, 512
BspCNI	CTCAG	6 cut(s)	37, 97, 217, 319, 585, 611
BspDI	ATCGAT	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	63, 151
BspPI	GGATC	2 cut(s)	97, 389
BsrDI	GCAATG	1 cut(s)	420
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	4 cut(s)	9, 102, 124, 394
BssT1I	CCWWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	205, 270, 351, 478
Bst6I	CTCTTC	2 cut(s)	286, 363
BstAUI	TGTACA	1 cut(s)	534
BstDEI	CTNAG	8 cut(s)	24, 84, 197, 225, 322, 327, 593, 598
BstF5I	GGATG	2 cut(s)	103, 124
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	4 cut(s)	12, 105, 127, 397
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	9, 102, 124, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 443, 489
BstNSI	RCATGY	1 cut(s)	254
BstV1I	GCAGC	5 cut(s)	216, 388, 455, 458, 532
BstV2I	GAAGAC	2 cut(s)	463, 564
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	64, 320, 512
BsuTUI	ATCGAT	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	103, 124
BtsIMutI	CAGTG	3 cut(s)	275, 483, 590
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	352, 535
CviAII	CATG	2 cut(s)	251, 440
CviQI	GTAC	2 cut(s)	352, 535
DdeI	CTNAG	8 cut(s)	24, 84, 197, 225, 322, 327, 593, 598
DpnI	GATC	4 cut(s)	11, 104, 126, 396
DpnII	GATC	4 cut(s)	9, 102, 124, 394
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	286, 363
EarI	CTCTTC	2 cut(s)	286, 363
Ecl136II	GAGCTC	2 cut(s)	49, 597
Eco130I	CCWWGG	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	2 cut(s)	51, 599
Eco53kI	GAGCTC	2 cut(s)	49, 597
Eco57I	CTGAAG	3 cut(s)	62, 302, 383
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	2 cut(s)	49, 597
EcoT14I	CCWWGG	1 cut(s)	405
EcoT38I	GRGCYC	2 cut(s)	51, 599
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	254, 443
FaiI	YATR	7 cut(s)	80, 210, 252, 384, 441, 531, 533
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	2 cut(s)	250, 439
FauNDI	CATATG	1 cut(s)	531
Fnu4HI	GCNGC	6 cut(s)	230, 248, 402, 444, 447, 521
FokI	GGATG	2 cut(s)	110, 131
FriOI	GRGCYC	2 cut(s)	51, 599
Fsp4HI	GCNGC	6 cut(s)	230, 248, 402, 444, 447, 521
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	6 cut(s)	230, 248, 402, 444, 447, 521
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	64, 320, 512
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	254, 443
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	20, 169, 221, 299
HphI	GGTGA	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	42, 226, 304
Hpy188III	TCNNGA	5 cut(s)	7, 26, 52, 106, 572
HpyAV	CCTTC	4 cut(s)	37, 88, 280, 358
HpyCH4III	ACNGT	4 cut(s)	205, 270, 351, 478
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	232, 386, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 443, 489
HpyF3I	CTNAG	8 cut(s)	24, 84, 197, 225, 322, 327, 593, 598
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	2 cut(s)	254, 443
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	9, 102, 124, 394
LmnI	GCTCC	2 cut(s)	9, 46
LpnPI	CCDG	7 cut(s)	11, 20, 119, 171, 411, 518, 557
Lsp1109I	GCAGC	5 cut(s)	216, 388, 455, 458, 532
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	4 cut(s)	11, 104, 126, 396
MboI	GATC	4 cut(s)	9, 102, 124, 394
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	3 cut(s)	51, 494, 599
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	4 cut(s)	163, 307, 310, 535
MseI	TTAA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	427
MwoI	GCNNNNNNNGC	3 cut(s)	410, 443, 489
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	4 cut(s)	9, 102, 124, 394
NlaIII	CATG	2 cut(s)	254, 443
NlaIV	GGNNCC	2 cut(s)	63, 151
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	20, 221, 299
PflFI	GACNNNGTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	6 cut(s)	231, 249, 403, 445, 448, 522
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp124BI	GAGCTC	2 cut(s)	51, 599
PspN4I	GGNNCC	2 cut(s)	63, 151
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	9
PsyI	GACNNNGTC	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	353, 536
RsaNI	GTAC	2 cut(s)	352, 535
SacI	GAGCTC	2 cut(s)	51, 599
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	6 cut(s)	230, 248, 402, 444, 447, 521
Sau3AI	GATC	4 cut(s)	9, 102, 124, 394
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	178
SduI	GDGCHC	3 cut(s)	51, 494, 599
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	51, 599
StuI	AGGCCT	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	4 cut(s)	205, 270, 351, 478
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	51, 454
TatI	WGTACW	2 cut(s)	351, 534
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	3 cut(s)	20, 221, 299
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	275, 483, 597
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	5 cut(s)	229, 401, 443, 446, 520
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	275, 483, 597
Tth111I	GACNNNGTC	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	112
XceI	RCATGY	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	50
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.