Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012353

Physical Location & Seq

Genomic Coordinates Forward (+)

12729791 .. 12731936

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17910.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCGTTGCTCTTCACATTCAAACGGCACGTCGCTTGAACAAACTAGCCCTGGGTGCTACAACCTACTGTGCTGCCGCAGCGGATACAAGTTTTTCCCGCCAAACCAGACTCTTCGTTTCCAGTGGCTTCCTCCGCAATCCGTCTTCCAAATCTCGCCTCCAATGTCGAAGAAACGAGGTCTTTCGTTGGACGAGAAGCGTGAGAAGATGCTTCAGATCTTCTACGATTCTCAAGATTTCTTCCTTCTAAAGGAGCTTGAGAAGTCAGGGCCAAAGAAAGGTGTAATCTCTCAGTCTGTGAAAGATGTGATTCAGAGTTTAGTGGATGATGATCTTGTTTTCAAAGACAAGATAGGAACCTCTGTGTATTTTTGGAGTCTTCCTAGCACTGCTGGAAATCAGCTTAGGAATGTGTATAGCAGGCTTGAGTCGGATCTCAAAAGCAGTAAGAAGCGTCATGCAGAACTCATTGACCAGTGTAATGCACTGAAGAAGGGACGAGAGGATTCTGACGAGCGAGATGAGGCCTTAGCTGAACTGAAAGCCATAGAGCTAAAGCATAATGAGCTGAAGGATGAGGTGGCGCAGTACGCAGACAATGATCCAGCCGCCTTCGAAGCGATGAAGAAAGAAATTGAAGTTGCCCACTCAGCAGCTAATCGATGGACAGACAACATCTTCACAGTGCGTCAATGGTGTGCAAATAATTTCCCACAGGCCAAAGAGCAGCTCGAAAACTTGTACAACGAGATTGGAATAACGGAGGATTTTGACTATCTGGAGATGGCACCGGTTCCACTGAGCTCAGTTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009553 GO:0009555 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048285 GO:0048856 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mnd1

Protein Analysis

273

Amino Acids

31.05

Weight (kDa)

5.32

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29170 AT4G29170
fragaria_vesca	FvH4_1g06700 FvH4_1g06700
malus_domestica	MD15G1201700.v1.1
prunus_persica	Prupe.7G215800_v2.0.a1 Prupe.7G215800_v2.0.a1
pyrus_communis	pycom15g17910
rosa_chinensis	RchiOBHm_Chr2g0092441
rosa_laevigata	RLG00000016311
rosa_multiflora	Rmu_sc0002503.1_g000006 Rmu_sc0004296.1_g000021
rosa_roxburghii	Rroxscaffold_2G00149120
rosa_rugosa	Rorug02G0026300.1
rosa_samantha	Rh2AG072200 Rh2BG072600 Rh2CG073800 Rh2DG070600
rosa_wichuraiana	Rw2G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	787
AciI	CCGC	5 cut(s)	76, 81, 98, 134, 609
AclWI	GGATC	2 cut(s)	441, 596
AcuI	CTGAAG	3 cut(s)	197, 509, 590
AfaI	GTAC	2 cut(s)	590, 743
AfiI	CCNNNNNNNGG	2 cut(s)	250, 278
AgeI	ACCGGT	1 cut(s)	790
AgsI	TTSAA	4 cut(s)	21, 38, 343, 638
AjiI	CACGTC	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	8 cut(s)	256, 403, 533, 553, 568, 656, 730, 804
AluI	AGCT	8 cut(s)	256, 403, 533, 553, 568, 656, 730, 804
Alw21I	GWGCWC	1 cut(s)	806
AlwI	GGATC	2 cut(s)	441, 596
AoxI	GGCC	3 cut(s)	269, 525, 717
ApeKI	GCWGC	4 cut(s)	72, 78, 653, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AsiGI	ACCGGT	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	2 cut(s)	136, 371
Bbv12I	GWGCWC	1 cut(s)	806
BbvI	GCAGC	4 cut(s)	59, 90, 665, 739
BccI	CCATC	2 cut(s)	657, 778
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	45, 384
BfuI	GTATCC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	6 cut(s)	73, 76, 79, 609, 654, 728
BlsI	GCNGC	6 cut(s)	74, 77, 80, 610, 655, 729
Bme1390I	CCNGG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	358, 789, 795
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	136, 371
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	2 cut(s)	404, 529
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	216, 278, 446
Bsa29I	ATCGAT	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	49, 50
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 278
Bse118I	RCCGGY	1 cut(s)	790
Bse1I	ACTGG	2 cut(s)	121, 475
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	49, 50
BseGI	GGATG	2 cut(s)	331, 580
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	250, 278
BseMII	CTCAG	4 cut(s)	305, 663, 791, 819
BseNI	ACTGG	2 cut(s)	121, 475
BseXI	GCAGC	4 cut(s)	59, 90, 665, 739
BshFI	GGCC	3 cut(s)	271, 527, 719
BshNI	GGYRCC	1 cut(s)	787
BshTI	ACCGGT	1 cut(s)	790
BshVI	ATCGAT	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	806
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	250, 278
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	271, 527, 719
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	216, 331, 433, 601
BspACI	CCGC	5 cut(s)	76, 81, 98, 134, 609
BspANI	GGCC	3 cut(s)	271, 527, 719
BspCNI	CTCAG	4 cut(s)	304, 662, 792, 818
BspDI	ATCGAT	1 cut(s)	661
BspLI	GGNNCC	3 cut(s)	358, 789, 795
BspPI	GGATC	2 cut(s)	441, 596
BspQI	GCTCTTC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	787
BsrFI	RCCGGY	1 cut(s)	790
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	2 cut(s)	121, 475
BssAI	RCCGGY	1 cut(s)	790
BssECI	CCNNGG	2 cut(s)	49, 50
BssMI	GATC	4 cut(s)	216, 331, 433, 601
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	69, 685
Bst6I	CTCTTC	2 cut(s)	16, 117
BstAUI	TGTACA	1 cut(s)	741
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	6 cut(s)	291, 404, 529, 649, 800, 805
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	331, 580
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	219, 334, 436, 604
BstMBI	GATC	4 cut(s)	216, 331, 433, 601
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 78, 133, 565, 590, 617, 650
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	59, 90, 665, 739
BstV2I	GAAGAC	2 cut(s)	136, 371
BstX2I	RGATCY	2 cut(s)	216, 433
BstYI	RGATCY	2 cut(s)	216, 433
Bsu15I	ATCGAT	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	271, 527, 719
BsuTUI	ATCGAT	1 cut(s)	661
BtgZI	GCGATG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	331, 580
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	6 cut(s)	128, 387, 482, 485, 690, 797
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	790
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	661
CseI	GACGC	2 cut(s)	443, 677
Csp6I	GTAC	2 cut(s)	589, 742
CspAI	ACCGGT	1 cut(s)	790
CviAII	CATG	1 cut(s)	458
CviQI	GTAC	2 cut(s)	589, 742
DdeI	CTNAG	6 cut(s)	291, 404, 529, 649, 800, 805
DpnI	GATC	4 cut(s)	218, 333, 435, 603
DpnII	GATC	4 cut(s)	216, 331, 433, 601
Eam1104I	CTCTTC	2 cut(s)	16, 117
EarI	CTCTTC	2 cut(s)	16, 117
Ecl136II	GAGCTC	1 cut(s)	804
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	806
Eco53kI	GAGCTC	1 cut(s)	804
Eco57I	CTGAAG	3 cut(s)	197, 509, 590
EcoICRI	GAGCTC	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	806
FaeI	CATG	1 cut(s)	461
FaiI	YATR	4 cut(s)	417, 459, 548, 561
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	1 cut(s)	457
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	73, 76, 79, 609, 654, 728
FokI	GGATG	2 cut(s)	338, 587
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	6 cut(s)	73, 76, 79, 609, 654, 728
FspBI	CTAG	2 cut(s)	45, 384
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	6 cut(s)	73, 76, 79, 609, 654, 728
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	3 cut(s)	271, 527, 719
HapII	CCGG	1 cut(s)	791
HgaI	GACGC	2 cut(s)	443, 677
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	6 cut(s)	109, 227, 310, 376, 428, 506
HpaII	CCGG	1 cut(s)	791
Hpy188I	TCNGA	4 cut(s)	216, 315, 433, 511
Hpy188III	TCNNGA	2 cut(s)	233, 779
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	254, 487, 565, 622
HpyCH4III	ACNGT	2 cut(s)	69, 685
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	461, 485, 701
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 78, 133, 565, 590, 617, 650
HpyF3I	CTNAG	6 cut(s)	291, 404, 529, 649, 800, 805
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	461
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	4 cut(s)	216, 331, 433, 601
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	4 cut(s)	59, 90, 665, 739
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	45, 384
MaeII	ACGT	1 cut(s)	29
MalI	GATC	4 cut(s)	218, 333, 435, 603
MboI	GATC	4 cut(s)	216, 331, 433, 601
MflI	RGATCY	2 cut(s)	216, 433
MhlI	GDGCHC	1 cut(s)	806
MluCI	AATT	2 cut(s)	633, 706
MlyI	GAGTC	3 cut(s)	103, 385, 437
MmeI	TCCRAC	2 cut(s)	168, 411
MnlI	CCTC	8 cut(s)	141, 168, 170, 370, 496, 517, 571, 757
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	7 cut(s)	54, 78, 133, 565, 590, 617, 650
NdeII	GATC	4 cut(s)	216, 331, 433, 601
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	3 cut(s)	358, 789, 795
NspV	TTCGAA	1 cut(s)	615
PasI	CCCWGGG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	227, 310, 506
PinAI	ACCGGT	1 cut(s)	790
PkrI	GCNGC	6 cut(s)	74, 77, 80, 610, 655, 729
PleI	GAGTC	3 cut(s)	103, 384, 436
PpsI	GAGTC	3 cut(s)	103, 384, 436
Psp124BI	GAGCTC	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	358, 789, 795
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	216, 433
RsaI	GTAC	2 cut(s)	590, 743
RsaNI	GTAC	2 cut(s)	589, 742
SacI	GAGCTC	1 cut(s)	806
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	6 cut(s)	73, 76, 79, 609, 654, 728
Sau3AI	GATC	4 cut(s)	216, 331, 433, 601
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	3 cut(s)	103, 385, 437
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	806
SfaNI	GCATC	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	615
SmlI	CTYRAG	3 cut(s)	231, 257, 425
SmoI	CTYRAG	3 cut(s)	231, 257, 425
Sse9I	AATT	2 cut(s)	633, 706
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	5 cut(s)	76, 81, 98, 134, 609
SspMI	CTAG	2 cut(s)	45, 384
SstI	GAGCTC	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	69, 685
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	167, 615, 661, 732
TasI	AATT	2 cut(s)	633, 706
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	2 cut(s)	78, 611
TfiI	GAWTC	3 cut(s)	227, 310, 506
TscAI	CASTG	6 cut(s)	128, 394, 482, 492, 690, 804
TseI	GCWGC	4 cut(s)	72, 78, 653, 727
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	2 cut(s)	130, 776
TspRI	CASTG	6 cut(s)	128, 394, 482, 492, 690, 804
XagI	CCTNNNNNAGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	45, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.