AT4G29490

Aminopeptidase P, N-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14487883 .. 14491620
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29490.1

Sequence Viewer

Length: 1461 bp
ATGTCGTCTCTGTCTCCTCCACCGATTCCAATGGAACTCCACGCCGGTAACCGGAAAAAGTTACTAGAATCAATACGCCGTCAGTTATCTAGTTCCAATCGTTCTCTCGATGGATTTGTTCTTCTACAGGGTGGCGAGGAGAAAAATCGATACTGTACTGATCACACCGAGCTCTTCAGGCAAGAGAGTTATTTTGCTTACTTGTTTGGAGTCAGAGAGCCAGATTTCTATGGAGCTATTGACATTGGAAGTGGGAAATCTATCCTTTTTATTCCAAGGTTGCCTGATGATTATGCTGTTTGGTTGGGAGAGATTAAGCCATTGTCGCATTTTAAGGAAACATATATGGTTGACATGGTTTTCTATGTGGATGAGATTATTCAAGTCTTTAATGAACAATTTAAGGGATCTGGAAAGCCCCTGTTGTATCTCTTGCATGGTCTTAATACTGACAGCAGTAACTTCTCAAAACCTGCCAGCTTTGAGGGGATAGACAAGTTTGAGACTGATTTGACTACTTTACATCCTATTTTGGCGGAATGTCGAGTTATTAAATCAAGTTTGGAGCTTCAACTAATACAGTTTGCAAATGATATAAGTTCTGAAGCTCATATAGAGGTTATGAGGAAAGTCACACCGGGCATGAAAGAATATCAGATGGAAAGTATGTTTTTGCATCACAGCTACATGTACGGTGGCTGTAGGCATTGCTCGTACACATGCATTTGTGCAACAGGGGATAATAGTGCTGTTCTTCATTATGGGCATGCTGCGGCTCCAAATGATAGGACTTTTGAAGATGGAGATTTGGCATTGCTTGATATGGGTGCTGAATACCATTTTTATGGGTCTGACATAACATGCTCATTCCCCGTCAATGGTAAATTTACAAGTGACCAGAGTCTAATCTACAATGCTGTTCTGGATGCACATAATTCTGTAATCTCTGCGATGAAGCCAGGAGTAAACTGGGTGGATATGCACAAGTTAGCTGAAAAAATCATCCTTGAGTCACTGAAGAAGGGGTCCATACTCACTGGTGATGTAGATGACATGATGGTACAGCGCTTGGGTGCTGTTTTCATGCCTCATGGACTAGGTCACTTCATGGGCATCGACACTCACGATACTGGTGGCTACCCAAAGGGAGTGGAGAGACCAAAGAAACCTGGATTGAAGTCATTACGAACTGCAAGAGACCTACTTGAAGGAATGGTAATAACGGTGGAACCAGGATGCTATTTCATCAAGGCATTGCTGTTCCCAGCCATGGCAAACGCAACAACCTCTAAGTTCTTCAACCGTGAAACAATAGAGAGATTCAGAAATTTCGGAGGTGTCAGAATCGAAAGCGATTTGGTCGTTACTGCTAATGGCTGCAAGAACATGACGAATGTTCCACGAGAGACATGGGAGATCGAAGCTGTGATGGCTGGAGGGCCTTGGCCACCGACCAAGTGA

Protein Analysis

486

Amino Acids

54.4

Weight (kDa)

5.8

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_N PF05195 14 - 139 2.8e-27 Aminopeptidase P, N-terminal domain
Peptidase_M24 PF00557 192 - 457 4.1e-54 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29490
fragaria_vesca FvH4_1g06970 FvH4_1g06970
malus_domestica MD15G1203700.v1.1
prunus_persica Prupe.7G213700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092921
rosa_laevigata RLG00000016347
rosa_multiflora Rmu_sc0000965.1_g000005
rosa_roxburghii Rroxscaffold_2G00148730
rosa_rugosa Rorug02G0030100
rosa_samantha Rh2AG076000 Rh2BG077300
rosa_wichuraiana Rw2G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AciI CCGC 2 cut(s) 536, 773
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 1445
AcsI RAATTY 2 cut(s) 884, 1327
AcuI CTGAAG 3 cut(s) 160, 624, 1037
AfaI GTAC 4 cut(s) 157, 692, 716, 1062
AfeI AGCGCT 1 cut(s) 1067
AfiI CCNNNNNNNGG 3 cut(s) 51, 878, 1270
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 6 cut(s) 383, 572, 797, 1177, 1208, 1300
AjnI CCWGG 3 cut(s) 958, 1168, 1231
AluBI AGCT 8 cut(s) 172, 236, 480, 568, 608, 684, 992, 1424
AluI AGCT 8 cut(s) 172, 236, 480, 568, 608, 684, 992, 1424
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 6 cut(s) 12, 18, 497, 1150, 1191, 1400
AlwI GGATC 1 cut(s) 415
Aor51HI AGCGCT 1 cut(s) 1067
AoxI GGCC 2 cut(s) 1439, 1445
ApeKI GCWGC 2 cut(s) 770, 1377
ApoI RAATTY 2 cut(s) 884, 1327
AspLEI GCGC 1 cut(s) 1068
AspS9I GGNCC 2 cut(s) 1026, 1439
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 1052
AvaII GGWCC 1 cut(s) 1026
BalI TGGCCA 1 cut(s) 1447
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 1401
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 757, 1364
BccI CCATC 5 cut(s) 104, 652, 794, 1051, 1423
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 3 cut(s) 960, 1170, 1233
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 6 cut(s) 12, 18, 497, 1150, 1191, 1400
BfaI CTAG 3 cut(s) 65, 90, 1097
BfmI CTRYAG 2 cut(s) 125, 700
BfoI RGCGCY 1 cut(s) 1069
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 3 cut(s) 771, 774, 1378
BlsI GCNGC 3 cut(s) 772, 775, 1379
Bme1390I CCNGG 4 cut(s) 639, 960, 1170, 1233
Bme18I GGWCC 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 1026, 1439
BmiI GGNNCC 3 cut(s) 777, 1027, 1230
BmrFI CCNGG 4 cut(s) 639, 960, 1170, 1233
BmrI ACTGGG 1 cut(s) 979
BmsI GCATC 4 cut(s) 685, 916, 1122, 1226
BmuI ACTGGG 1 cut(s) 979
BoxI GACNNNNGTC 1 cut(s) 900
BpmI CTGGAG 1 cut(s) 1455
BpuEI CTTGAG 1 cut(s) 1028
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 148
BsaI GGTCTC 2 cut(s) 1150, 1191
BsaJI CCNNGG 3 cut(s) 275, 1269, 1442
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 878, 1270
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 974, 1042, 1135
Bse3DI GCAATG 3 cut(s) 706, 812, 1253
BseBI CCWGG 3 cut(s) 960, 1170, 1233
BseCI ATCGAT 1 cut(s) 148
BseDI CCNNGG 3 cut(s) 275, 1269, 1442
BseGI GGATG 5 cut(s) 376, 523, 931, 1002, 1241
BseLI CCNNNNNNNGG 3 cut(s) 51, 878, 1270
BseMI GCAATG 3 cut(s) 706, 812, 1253
BseNI ACTGG 3 cut(s) 974, 1042, 1135
BseRI GAGGAG 2 cut(s) 6, 152
BseXI GCAGC 2 cut(s) 757, 1364
BseYI CCCAGC 1 cut(s) 1264
BshFI GGCC 2 cut(s) 1441, 1447
BshVI ATCGAT 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 3 cut(s) 45, 52, 638
BslI CCNNNNNNNGG 3 cut(s) 51, 878, 1270
BsmAI GTCTC 6 cut(s) 12, 18, 497, 1150, 1191, 1400
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 1441, 1447
Bso31I GGTCTC 2 cut(s) 1150, 1191
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 160, 407, 1416
Bsp19I CCATGG 1 cut(s) 1269
BspACI CCGC 2 cut(s) 536, 773
BspANI GGCC 2 cut(s) 1441, 1447
BspDI ATCGAT 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 777, 1027, 1230
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 1150, 1191
BsrDI GCAATG 3 cut(s) 706, 812, 1253
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 974, 1042, 1135
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 275, 1269, 1442
BssMI GATC 3 cut(s) 160, 407, 1416
BssSI CACGAG 1 cut(s) 1401
BssT1I CCWWGG 3 cut(s) 275, 1269, 1442
Bst2BI CACGAG 1 cut(s) 1401
Bst2UI CCWGG 3 cut(s) 960, 1170, 1233
Bst4CI ACNGT 5 cut(s) 155, 582, 695, 1225, 1304
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 478, 768
BstDEI CTNAG 1 cut(s) 1290
BstDSI CCRYGG 1 cut(s) 1269
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 5 cut(s) 376, 523, 931, 1002, 1241
BstH2I RGCGCY 1 cut(s) 1069
BstHHI GCGC 1 cut(s) 1068
BstKTI GATC 3 cut(s) 163, 410, 1419
BstMAI GTCTC 6 cut(s) 12, 18, 497, 1150, 1191, 1400
BstMBI GATC 3 cut(s) 160, 407, 1416
BstMWI GCNNNNNNNGC 3 cut(s) 178, 325, 1430
BstNI CCWGG 3 cut(s) 960, 1170, 1233
BstNSI RCATGY 4 cut(s) 691, 723, 770, 864
BstPAI GACNNNNGTC 1 cut(s) 900
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 4 cut(s) 637, 958, 1168, 1231
BstSFI CTRYAG 2 cut(s) 125, 700
BstV1I GCAGC 2 cut(s) 757, 1364
BstX2I RGATCY 1 cut(s) 407
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 2 cut(s) 1441, 1447
BsuTUI ATCGAT 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 1269
BtgZI GCGATG 1 cut(s) 965
BtsCI GGATG 5 cut(s) 376, 523, 931, 1002, 1241
BtsIMutI CAGTG 2 cut(s) 1013, 1035
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 478, 768
CfoI GCGC 1 cut(s) 1068
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 1026, 1439
ClaI ATCGAT 1 cut(s) 148
Csp6I GTAC 4 cut(s) 156, 691, 715, 1061
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviQI GTAC 4 cut(s) 156, 691, 715, 1061
DdeI CTNAG 1 cut(s) 1290
DpnI GATC 3 cut(s) 162, 409, 1418
DpnII GATC 3 cut(s) 160, 407, 1416
EaeI YGGCCR 1 cut(s) 1445
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 275, 1269, 1442
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 2 cut(s) 1150, 1191
Eco47I GGWCC 1 cut(s) 1026
Eco47III AGCGCT 1 cut(s) 1067
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 3 cut(s) 160, 624, 1037
Eco91I GGTNACC 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 1439
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 958, 1168, 1231
EcoT14I CCWWGG 3 cut(s) 275, 1269, 1442
EcoT22I ATGCAT 1 cut(s) 725
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 3 cut(s) 275, 1269, 1442
Esp3I CGTCTC 1 cut(s) 12
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 771, 774, 1378
FokI GGATG 5 cut(s) 383, 510, 938, 989, 1248
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 771, 774, 1378
FspBI CTAG 3 cut(s) 65, 90, 1097
GlaI GCGC 1 cut(s) 1067
GluI GCNGC 3 cut(s) 771, 774, 1378
GsaI CCCAGC 1 cut(s) 1268
GsuI CTGGAG 1 cut(s) 1455
HaeII RGCGCY 1 cut(s) 1069
HaeIII GGCC 2 cut(s) 1441, 1447
HapII CCGG 3 cut(s) 45, 52, 638
HhaI GCGC 1 cut(s) 1068
Hin6I GCGC 1 cut(s) 1066
HinP1I GCGC 1 cut(s) 1066
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 7 cut(s) 25, 68, 210, 901, 1010, 1320, 1344
HpaII CCGG 3 cut(s) 45, 52, 638
HphI GGTGA 1 cut(s) 1052
Hpy166II GTNNAC 3 cut(s) 352, 717, 967
Hpy188I TCNGA 7 cut(s) 215, 604, 657, 853, 1325, 1334, 1343
Hpy188III TCNNGA 4 cut(s) 107, 411, 923, 1124
Hpy8I GTNNAC 3 cut(s) 352, 717, 967
HpyAV CCTTC 2 cut(s) 1015, 1202
HpyCH4III ACNGT 5 cut(s) 155, 582, 695, 1225, 1304
HpyCH4V TGCA 9 cut(s) 436, 587, 676, 723, 731, 929, 982, 1193, 1380
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 325, 1430
HpyF3I CTNAG 1 cut(s) 1290
HspAI GCGC 1 cut(s) 1066
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 160, 407, 1416
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 3 cut(s) 233, 565, 781
Lsp1109I GCAGC 2 cut(s) 757, 1364
LweI GCATC 4 cut(s) 685, 916, 1122, 1226
MaeI CTAG 3 cut(s) 65, 90, 1097
MaeIII GTNAC 8 cut(s) 47, 60, 458, 631, 893, 1011, 1100, 1363
MalI GATC 3 cut(s) 162, 409, 1418
MboI GATC 3 cut(s) 160, 407, 1416
MboII GAAGA 6 cut(s) 113, 166, 746, 809, 1030, 1288
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 1447
MluCI AATT 4 cut(s) 398, 884, 934, 1327
MluNI TGGCCA 1 cut(s) 1447
MlyI GAGTC 3 cut(s) 219, 910, 1019
MnlI CCTC 9 cut(s) 27, 130, 478, 610, 618, 1098, 1297, 1328, 1430
Mox20I TGGCCA 1 cut(s) 1447
Mph1103I ATGCAT 1 cut(s) 725
MscI TGGCCA 1 cut(s) 1447
MseI TTAA 6 cut(s) 315, 333, 390, 402, 444, 552
MslI CAYNNNNRTG 1 cut(s) 843
Msp20I TGGCCA 1 cut(s) 1447
MspI CCGG 3 cut(s) 45, 52, 638
MspR9I CCNGG 4 cut(s) 639, 960, 1170, 1233
MvaI CCWGG 3 cut(s) 960, 1170, 1233
MwoI GCNNNNNNNGC 3 cut(s) 178, 325, 1430
NciI CCSGG 1 cut(s) 639
NcoI CCATGG 1 cut(s) 1269
NdeII GATC 3 cut(s) 160, 407, 1416
NlaIV GGNNCC 3 cut(s) 777, 1027, 1230
NmuCI GTSAC 4 cut(s) 631, 893, 1011, 1100
NsiI ATGCAT 1 cut(s) 725
NspI RCATGY 4 cut(s) 691, 723, 770, 864
PaeI GCATGC 1 cut(s) 770
PciI ACATGT 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 1122
PfeI GAWTC 4 cut(s) 25, 68, 1320, 1344
PflFI GACNNNGTC 1 cut(s) 1098
PkrI GCNGC 3 cut(s) 772, 775, 1379
PleI GAGTC 3 cut(s) 218, 909, 1018
PpsI GAGTC 3 cut(s) 218, 909, 1018
PscI ACATGT 1 cut(s) 687
PshAI GACNNNNGTC 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 3 cut(s) 958, 1168, 1231
PspEI GGTNACC 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 1264
PspGI CCWGG 3 cut(s) 958, 1168, 1231
PspN4I GGNNCC 3 cut(s) 777, 1027, 1230
PspPI GGNCC 2 cut(s) 1026, 1439
PsuI RGATCY 1 cut(s) 407
PsyI GACNNNGTC 1 cut(s) 1098
RsaI GTAC 4 cut(s) 157, 692, 716, 1062
RsaNI GTAC 4 cut(s) 156, 691, 715, 1061
RseI CAYNNNNRTG 1 cut(s) 843
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 6 cut(s) 315, 333, 390, 402, 444, 552
SatI GCNGC 3 cut(s) 771, 774, 1378
Sau3AI GATC 3 cut(s) 160, 407, 1416
Sau96I GGNCC 2 cut(s) 1026, 1439
SchI GAGTC 3 cut(s) 219, 910, 1019
ScrFI CCNGG 4 cut(s) 639, 960, 1170, 1233
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 4 cut(s) 685, 916, 1122, 1226
SfcI CTRYAG 2 cut(s) 125, 700
SinI GGWCC 1 cut(s) 1026
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
SphI GCATGC 1 cut(s) 770
Sse9I AATT 4 cut(s) 398, 884, 934, 1327
SsiI CCGC 2 cut(s) 536, 773
SspMI CTAG 3 cut(s) 65, 90, 1097
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 4 cut(s) 637, 958, 1168, 1231
StyI CCWWGG 3 cut(s) 275, 1269, 1442
TaaI ACNGT 5 cut(s) 155, 582, 695, 1225, 1304
TaqI TCGA 6 cut(s) 108, 148, 544, 1116, 1347, 1419
TasI AATT 4 cut(s) 398, 884, 934, 1327
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 4 cut(s) 25, 68, 1320, 1344
Tru1I TTAA 6 cut(s) 315, 333, 390, 402, 444, 552
Tru9I TTAA 6 cut(s) 315, 333, 390, 402, 444, 552
TscAI CASTG 2 cut(s) 1020, 1042
TseFI GTSAC 4 cut(s) 631, 893, 1011, 1100
TseI GCWGC 2 cut(s) 770, 1377
Tsp45I GTSAC 4 cut(s) 631, 893, 1011, 1100
TspDTI ATGAA 7 cut(s) 408, 659, 746, 968, 1072, 1096, 1234
TspRI CASTG 2 cut(s) 1020, 1042
Tth111I GACNNNGTC 1 cut(s) 1098
VpaK11BI GGWCC 1 cut(s) 1026
XapI RAATTY 2 cut(s) 884, 1327
XceI RCATGY 4 cut(s) 691, 723, 770, 864
XcmI CCANNNNNNNNNTGG 2 cut(s) 966, 1407
XspI CTAG 3 cut(s) 65, 90, 1097
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.