MD15G1203700.v1.1

xaa-Pro dipeptidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
16205509 .. 16209940
4432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1203700.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGGCTTCGCCGTCGTCTCTCACTCCTCCTCCAGTCCCACCGGAGCTCCACGTCACCAACCGCGAAACGCTCCTCAATTCACTTCGCCGCCACCTCTCTGAATCTTCCCGCCCCCTCTACGGCTTCGTTCTCCTCCAAGGAGGCGAAGAGCAGAATCGCTATGACACTGATCACACCGAGCTCTTCAGACAAGAGAGTTACTTTGCTTACTTGTTTGGAGTAAGAGAGCCTGGTTTCTATGGAGCTATAGACATTGCAACAGGGAAGTCTGTTCTCTTTGCTCCGAGATTGCCTGCTGAATATGCTGTTTGGTTGGGAGAGATAAAGCCTTTATCTTACTTCAAGGAAAGATATATGGTTAGCATGGTACACTATACTGATGAGATCGCAACAGTTTTGCATGATGAATACAAGGGATCCGGTAAACCTGTATTGTTTCTCTTGCATGGGATCAACACTGATAGTGATCTATTCTCGAAACCCGCGGAGTTTCAGGGGATTGATAAGTTTGACACAGATTTGACTACCTTGCATCCAGTTTTGAGTGAATGCCGTGTTATAAAATCAGATCCGGAGCTTGCCCTTATCCAGTTTGCCAATGATATAAGTTCTGAAGCTCATGTGGAGGTTATGAGAAAAATTAGGGTAGGCATGTACGAGTATCAGCTGGAAAGCATGTTTCTTCACCACACCTACATGTATGGTGGCTGTAGACATTGCTCGTACACATGTATTTGTGCTACTGGTGATAATAGTGCTGTTCTCCATTATGGGCATGCAGCAGCTCCGAATGACAGGATCTTGGAAGATGGAGATTTGGCATTGCTTGATATGGGAGCTGAATACAACTTCTATGGTTCTGACATCACTTGTTCTTATCCAGTGAACGGAAAGTTTACCCCTGACCAAGCACTTATATATAATGCTGTCCTTGATGCTCACAATGCTGTTATATCTACAATGAAACCTGGAGTAAGCTGGCTTGGTATGCATAAACTAGCAGAAAAGGTTATTCTTGAATCATTGAAGAGAGGGAGGATCCTAGTCGGGAACGTTGATGATATGATGGTCAAACGACTGGGTGCTGTTTTTATGCCTCATGGTCTTGGGCATTTGCTTGGTATTGACACTCATGATACTGGTGGCTACCCAAAGGGAACGGAGAGATCAAAAGAACCTGGATTGAAGTCTTTACGTACAACAAGAGAACTCCAAGAGGGAATGGTGATAACGGTAGAGCCTGGTTGCTACTTCATTGATGCTTTGTTGGTTCCAGCTATGGGAAACTCAAATACTACCAAGTTCTTCAATCATGAAGCAGTTAGTAGGTTTAAGGGTTTTGGTGGAGTTCGAATTGAAAGTGATGTGCTTGTCATGGCTAACGGTTGTAAGAACATGACAAACGTTCCTCGGGAAATATCGGAGATTGAAGCAGTAATGGCAGGGGCGCCATGGCCACTTGATAAATGA

Protein Analysis

490

Amino Acids

54.42

Weight (kDa)

5.62

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_N PF05195 17 - 142 1.1e-25 Aminopeptidase P, N-terminal domain
Peptidase_M24 PF00557 195 - 458 2e-55 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29490
fragaria_vesca FvH4_1g06970 FvH4_1g06970
malus_domestica MD15G1203700.v1.1
prunus_persica Prupe.7G213700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092921
rosa_laevigata RLG00000016347
rosa_multiflora Rmu_sc0000965.1_g000005
rosa_roxburghii Rroxscaffold_2G00148730
rosa_rugosa Rorug02G0030100
rosa_samantha Rh2AG076000 Rh2BG077300
rosa_wichuraiana Rw2G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 1447
AccI GTMKAC 1 cut(s) 712
AccII CGCG 2 cut(s) 63, 485
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 5 cut(s) 61, 88, 109, 483, 485
AclI AACGTT 2 cut(s) 1053, 1404
AclWI GGATC 7 cut(s) 411, 424, 458, 563, 806, 1033, 1046
AcoI YGGCCR 1 cut(s) 1454
AcuI CTGAAG 2 cut(s) 169, 633
AcyI GRCGYC 1 cut(s) 1448
AfaI GTAC 4 cut(s) 369, 656, 725, 1198
AfiI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
AflIII ACRYGT 2 cut(s) 696, 728
AgsI TTSAA 7 cut(s) 343, 1019, 1027, 1186, 1309, 1358, 1430
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 4 cut(s) 229, 967, 1177, 1240
Alw21I GWGCWC 2 cut(s) 48, 183
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 7 cut(s) 411, 424, 458, 563, 806, 1033, 1046
Ama87I CYCGRG 1 cut(s) 1410
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 1 cut(s) 1454
ApeKI GCWGC 2 cut(s) 779, 782
AspLEI GCGC 1 cut(s) 1450
AsuHPI GGTGA 4 cut(s) 46, 677, 758, 1237
AsuII TTCGAA 1 cut(s) 1351
AvaI CYCGRG 1 cut(s) 1410
BalI TGGCCA 1 cut(s) 1456
BamHI GGATCC 2 cut(s) 416, 1038
BanI GGYRCC 1 cut(s) 1447
BanII GRGCYC 2 cut(s) 48, 183
Bbv12I GWGCWC 2 cut(s) 48, 183
BbvI GCAGC 2 cut(s) 791, 794
BccI CCATC 2 cut(s) 803, 1060
BceAI ACGGC 2 cut(s) 136, 537
BciT130I CCWGG 4 cut(s) 231, 969, 1179, 1242
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 998, 1043
BfmI CTRYAG 2 cut(s) 246, 709
BfoI RGCGCY 1 cut(s) 1451
BisI GCNGC 3 cut(s) 88, 780, 783
BlsI GCNGC 3 cut(s) 89, 781, 784
Bme1390I CCNGG 4 cut(s) 231, 969, 1179, 1242
BmeT110I CYCGRG 1 cut(s) 1410
BmgBI CACGTC 1 cut(s) 52
BmiI GGNNCC 4 cut(s) 418, 1040, 1272, 1449
BmrFI CCNGG 4 cut(s) 231, 969, 1179, 1242
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 3 cut(s) 541, 925, 1249
BmuI ACTGGG 1 cut(s) 1088
BpmI CTGGAG 2 cut(s) 15, 990
Bpu14I TTCGAA 1 cut(s) 1351
BsaAI YACGTR 1 cut(s) 1196
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 1448
BsaJI CCNNGG 4 cut(s) 136, 483, 1409, 1451
BsaWI WCCGGW 3 cut(s) 40, 419, 571
BsaXI ACNNNNNCTCC 4 cut(s) 13, 30, 43, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 887, 1280
Bse1I ACTGG 7 cut(s) 32, 536, 589, 748, 881, 1083, 1144
Bse3DI GCAATG 3 cut(s) 252, 715, 821
Bse8I GATNNNNATC 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 571
BseBI CCWGG 4 cut(s) 231, 969, 1179, 1242
BseDI CCNNGG 4 cut(s) 136, 483, 1409, 1451
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
BseMI GCAATG 3 cut(s) 252, 715, 821
BseNI ACTGG 7 cut(s) 32, 536, 589, 748, 881, 1083, 1144
BseRI GAGGAG 4 cut(s) 15, 18, 62, 122
BseXI GCAGC 2 cut(s) 791, 794
Bsh1236I CGCG 2 cut(s) 63, 485
BshFI GGCC 1 cut(s) 1456
BshNI GGYRCC 1 cut(s) 1447
BsiHKAI GWGCWC 2 cut(s) 48, 183
BsiHKCI CYCGRG 1 cut(s) 1410
BsiSI CCGG 3 cut(s) 41, 420, 572
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 1 cut(s) 1456
BsoBI CYCGRG 1 cut(s) 1410
Bsp119I TTCGAA 1 cut(s) 1351
Bsp1286I GDGCHC 2 cut(s) 48, 183
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
Bsp19I CCATGG 1 cut(s) 1451
BspACI CCGC 5 cut(s) 61, 88, 109, 483, 485
BspANI GGCC 1 cut(s) 1456
BspEI TCCGGA 1 cut(s) 571
BspFNI CGCG 2 cut(s) 63, 485
BspHI TCATGA 2 cut(s) 1132, 1312
BspLI GGNNCC 4 cut(s) 418, 1040, 1272, 1449
BspPI GGATC 7 cut(s) 411, 424, 458, 563, 806, 1033, 1046
BspQI GCTCTTC 2 cut(s) 141, 188
BspT104I TTCGAA 1 cut(s) 1351
BspT107I GGYRCC 1 cut(s) 1447
BsrDI GCAATG 3 cut(s) 252, 715, 821
BsrI ACTGG 7 cut(s) 32, 536, 589, 748, 881, 1083, 1144
BssECI CCNNGG 4 cut(s) 136, 483, 1409, 1451
BssMI GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
BssNI GRCGYC 1 cut(s) 1448
BssT1I CCWWGG 2 cut(s) 136, 1451
Bst2UI CCWGG 4 cut(s) 231, 969, 1179, 1242
Bst4CI ACNGT 3 cut(s) 394, 1234, 1385
Bst6I CTCTTC 3 cut(s) 141, 188, 1022
BstACI GRCGYC 1 cut(s) 1448
BstBAI YACGTR 1 cut(s) 1196
BstBI TTCGAA 1 cut(s) 1351
BstC8I GCNNGC 4 cut(s) 294, 579, 777, 980
BstDSI CCRYGG 2 cut(s) 483, 1451
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 2 cut(s) 63, 485
BstH2I RGCGCY 1 cut(s) 1451
BstHHI GCGC 1 cut(s) 1450
BstKTI GATC 9 cut(s) 172, 387, 419, 453, 469, 571, 801, 1041, 1169
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
BstMWI GCNNNNNNNGC 4 cut(s) 302, 944, 988, 1439
BstNI CCWGG 4 cut(s) 231, 969, 1179, 1242
BstNSI RCATGY 5 cut(s) 655, 679, 700, 732, 779
BstSCI CCNGG 4 cut(s) 229, 967, 1177, 1240
BstSFI CTRYAG 2 cut(s) 246, 709
BstSNI TACGTA 1 cut(s) 1196
BstUI CGCG 2 cut(s) 63, 485
BstV1I GCAGC 2 cut(s) 791, 794
BstX2I RGATCY 4 cut(s) 416, 568, 798, 1038
BstYI RGATCY 4 cut(s) 416, 568, 798, 1038
BsuRI GGCC 1 cut(s) 1456
BtgI CCRYGG 2 cut(s) 483, 1451
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 165, 456, 888
Cac8I GCNNGC 4 cut(s) 294, 579, 777, 980
CciI TCATGA 2 cut(s) 1132, 1312
CfoI GCGC 1 cut(s) 1450
Cfr42I CCGCGG 1 cut(s) 486
Csp6I GTAC 4 cut(s) 368, 655, 724, 1197
CviQI GTAC 4 cut(s) 368, 655, 724, 1197
DinI GGCGCC 1 cut(s) 1449
DpnI GATC 9 cut(s) 171, 386, 418, 452, 468, 570, 800, 1040, 1168
DpnII GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
EaeI YGGCCR 1 cut(s) 1454
Eam1104I CTCTTC 3 cut(s) 141, 188, 1022
EarI CTCTTC 3 cut(s) 141, 188, 1022
Ecl136II GAGCTC 2 cut(s) 46, 181
Eco105I TACGTA 1 cut(s) 1196
Eco130I CCWWGG 2 cut(s) 136, 1451
Eco24I GRGCYC 2 cut(s) 48, 183
Eco53kI GAGCTC 2 cut(s) 46, 181
Eco57I CTGAAG 2 cut(s) 169, 633
Eco88I CYCGRG 1 cut(s) 1410
EcoICRI GAGCTC 2 cut(s) 46, 181
EcoRII CCWGG 4 cut(s) 229, 967, 1177, 1240
EcoT14I CCWWGG 2 cut(s) 136, 1451
EcoT22I ATGCAT 1 cut(s) 993
EcoT38I GRGCYC 2 cut(s) 48, 183
EgeI GGCGCC 1 cut(s) 1449
EheI GGCGCC 1 cut(s) 1449
ErhI CCWWGG 2 cut(s) 136, 1451
Esp3I CGTCTC 1 cut(s) 21
FaqI GGGAC 1 cut(s) 20
FauI CCCGC 2 cut(s) 116, 490
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 88, 780, 783
FokI GGATG 1 cut(s) 519
FriOI GRGCYC 2 cut(s) 48, 183
Fsp4HI GCNGC 3 cut(s) 88, 780, 783
FspBI CTAG 2 cut(s) 998, 1043
GlaI GCGC 1 cut(s) 1449
GluI GCNGC 3 cut(s) 88, 780, 783
GsuI CTGGAG 2 cut(s) 15, 990
HaeII RGCGCY 1 cut(s) 1451
HaeIII GGCC 1 cut(s) 1456
HapII CCGG 3 cut(s) 41, 420, 572
HhaI GCGC 1 cut(s) 1450
Hin1I GRCGYC 1 cut(s) 1448
Hin6I GCGC 1 cut(s) 1448
HinP1I GCGC 1 cut(s) 1448
HinfI GANTC 3 cut(s) 101, 154, 1019
HpaII CCGG 3 cut(s) 41, 420, 572
HphI GGTGA 4 cut(s) 46, 677, 758, 1237
Hpy166II GTNNAC 6 cut(s) 370, 425, 713, 726, 886, 897
Hpy188I TCNGA 8 cut(s) 100, 188, 285, 568, 613, 789, 862, 1423
Hpy188III TCNNGA 7 cut(s) 475, 572, 1016, 1048, 1133, 1313, 1412
Hpy8I GTNNAC 6 cut(s) 370, 425, 713, 726, 886, 897
Hpy99I CGWCG 1 cut(s) 16
HpyCH4III ACNGT 3 cut(s) 394, 1234, 1385
HpyCH4IV ACGT 4 cut(s) 51, 1053, 1195, 1404
HpyCH4V TGCA 6 cut(s) 257, 400, 445, 532, 779, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 944, 988, 1439
HpySE526I ACGT 4 cut(s) 51, 1053, 1195, 1404
Hsp92I GRCGYC 1 cut(s) 1448
HspAI GCGC 1 cut(s) 1448
KasI GGCGCC 1 cut(s) 1447
Kpn2I TCCGGA 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 169
KspI CCGCGG 1 cut(s) 486
Kzo9I GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
LguI GCTCTTC 2 cut(s) 141, 188
LmnI GCTCC 8 cut(s) 43, 51, 75, 242, 286, 574, 790, 836
Lsp1109I GCAGC 2 cut(s) 791, 794
LweI GCATC 3 cut(s) 541, 925, 1249
MaeI CTAG 2 cut(s) 998, 1043
MaeII ACGT 4 cut(s) 51, 1053, 1195, 1404
MaeIII GTNAC 2 cut(s) 52, 197
MalI GATC 9 cut(s) 171, 386, 418, 452, 468, 570, 800, 1040, 1168
MboI GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
MboII GAAGA 7 cut(s) 96, 158, 175, 674, 818, 1039, 1297
MflI RGATCY 4 cut(s) 416, 568, 798, 1038
MhlI GDGCHC 2 cut(s) 48, 183
MlsI TGGCCA 1 cut(s) 1456
MluCI AATT 3 cut(s) 76, 639, 1353
MluNI TGGCCA 1 cut(s) 1456
Mly113I GGCGCC 1 cut(s) 1448
Mox20I TGGCCA 1 cut(s) 1456
Mph1103I ATGCAT 1 cut(s) 993
MroI TCCGGA 1 cut(s) 571
MscI TGGCCA 1 cut(s) 1456
MseI TTAA 1 cut(s) 1332
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 1456
MspA1I CMGCKG 2 cut(s) 485, 667
MspI CCGG 3 cut(s) 41, 420, 572
MspR9I CCNGG 4 cut(s) 231, 969, 1179, 1242
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 4 cut(s) 231, 969, 1179, 1242
MvnI CGCG 2 cut(s) 63, 485
MwoI GCNNNNNNNGC 4 cut(s) 302, 944, 988, 1439
NarI GGCGCC 1 cut(s) 1448
NcoI CCATGG 1 cut(s) 1451
NdeII GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
NlaIV GGNNCC 4 cut(s) 418, 1040, 1272, 1449
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 5 cut(s) 655, 679, 700, 732, 779
NspV TTCGAA 1 cut(s) 1351
PaeI GCATGC 1 cut(s) 779
PagI TCATGA 2 cut(s) 1132, 1312
PciI ACATGT 2 cut(s) 696, 728
PciSI GCTCTTC 2 cut(s) 141, 188
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 101, 154, 1019
PkrI GCNGC 3 cut(s) 89, 781, 784
PluTI GGCGCC 1 cut(s) 1451
Ppu21I YACGTR 1 cut(s) 1196
PscI ACATGT 2 cut(s) 696, 728
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 2 cut(s) 48, 183
Psp1406I AACGTT 2 cut(s) 1053, 1404
Psp6I CCWGG 4 cut(s) 229, 967, 1177, 1240
PspGI CCWGG 4 cut(s) 229, 967, 1177, 1240
PspN4I GGNNCC 4 cut(s) 418, 1040, 1272, 1449
PsuI RGATCY 4 cut(s) 416, 568, 798, 1038
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 4 cut(s) 369, 656, 725, 1198
RsaNI GTAC 4 cut(s) 368, 655, 724, 1197
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 2 cut(s) 48, 183
SacII CCGCGG 1 cut(s) 486
SapI GCTCTTC 2 cut(s) 141, 188
SaqAI TTAA 1 cut(s) 1332
SatI GCNGC 3 cut(s) 88, 780, 783
Sau3AI GATC 9 cut(s) 169, 384, 416, 450, 466, 568, 798, 1038, 1166
ScrFI CCNGG 4 cut(s) 231, 969, 1179, 1242
SduI GDGCHC 2 cut(s) 48, 183
SfaNI GCATC 3 cut(s) 541, 925, 1249
SfcI CTRYAG 2 cut(s) 246, 709
SfoI GGCGCC 1 cut(s) 1449
Sfr303I CCGCGG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 1351
SgrBI CCGCGG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 695
SnaBI TACGTA 1 cut(s) 1196
SphI GCATGC 1 cut(s) 779
Sse9I AATT 3 cut(s) 76, 639, 1353
SsiI CCGC 5 cut(s) 61, 88, 109, 483, 485
SspDI GGCGCC 1 cut(s) 1447
SspMI CTAG 2 cut(s) 998, 1043
SstI GAGCTC 2 cut(s) 48, 183
StyD4I CCNGG 4 cut(s) 229, 967, 1177, 1240
StyI CCWWGG 2 cut(s) 136, 1451
TaaI ACNGT 3 cut(s) 394, 1234, 1385
TaiI ACGT 4 cut(s) 54, 1056, 1198, 1407
TaqI TCGA 2 cut(s) 476, 1351
TasI AATT 3 cut(s) 76, 639, 1353
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 101, 154, 1019
Tru1I TTAA 1 cut(s) 1332
Tru9I TTAA 1 cut(s) 1332
TscAI CASTG 3 cut(s) 172, 463, 888
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 779, 782
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 420, 977, 1243, 1329
TspGWI ACGGA 2 cut(s) 903, 1175
TspRI CASTG 3 cut(s) 172, 463, 888
XceI RCATGY 5 cut(s) 655, 679, 700, 732, 779
XmiI GTMKAC 1 cut(s) 712
XspI CTAG 2 cut(s) 998, 1043
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.