Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0017195

Physical Location & Seq

Genomic Coordinates Forward (+)

28469 .. 32686

Gene Structure 4218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atggcttcgtcatcgtcgctgattcctcctccggtcccgatcgaactccacctccgcaaccgcgaaaagctcctcaactctattcgccaccatctctctcagtcctctcggcccctccatggcttcgtcttgctccaaggaggcgaggaacaaaatcgctacgatactgatcacgtcgatgtcttcaggcaggagagttactttgcttacttgtttggagtaagagagcctggtttctatggtgctatagacattgcgactgggaaatctattctgttttctcctagattacctgccgagtatgctgtttggttgggggagataaagccgttatcctactttaaggagagatatatggttagtgtggtatactataccgctgagattacaaaagttttacaagatgaatggcaggcatctggtaaacctttattgtttctcctgcatgggctcaacactgacagtgataacttctcgaaaccagcagagtttcaggggattgataactttgacacggacttgactaccttgcatccgattttgactgaatgccgtgttacaaaatcagatctggagatcgcccttatccaacactgctcttatacttgtatttgtgctactggcggaaatagtgctgttctccattatgggcatgcagcagctccaaatgacaggaccctggaagatggagatttggcattgcttgatatgggagctgaatataatttttatgggtctgacataacttgttcctaccctgtgaatggaaagtttacctctgaccaatcccttatatacaaagctgttcttgatgctcacaatgctgtcatatcggcactgaaacctggagtaagctgggtcgatatgcataaactagcagaaaaggttattcttgactcattaaagagagagggcgttctagatggtaatgtagacgatatgatggttgaacgactgggtgctgttttcatgcctcacgggctcggacatttgcttggtattgacactcatgatcctggtggctacttgaagggaccggagaggataaaagaacctggactgaagtctttgcgtacaacaagacaagtggaagaagggatggtgataacagtggagcctggttgctacttcatagatgctttgttggttccagccatgggaagtccaaatactacaaagtttttcaatcatgaagcagttggtagatttaaaggttttggtggagttcgaattgaaagcgacgtgctaatcacagccaatagttgtaagaacatgacaaaggttcctcgggaaataggcgagattgaagcagtcatggcaggagcaccatggcctcttgacaaagcctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006082 GO:0006508 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

450

Amino Acids

49.71

Weight (kDa)

5.45

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29490
fragaria_vesca	FvH4_1g06970 FvH4_1g06970
malus_domestica	MD15G1203700.v1.1
prunus_persica	Prupe.7G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092921
rosa_laevigata	RLG00000016347
rosa_multiflora	Rmu_sc0000965.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148730
rosa_rugosa	Rorug02G0030100
rosa_samantha	Rh2AG076000 Rh2BG077300
rosa_wichuraiana	Rw2G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	369, 933
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	55, 61, 378, 624
AclWI	GGATC	1 cut(s)	1007
AcuI	CTGAAG	2 cut(s)	169, 1082
AfaI	GTAC	1 cut(s)	1075
AfiI	CCNNNNNNNGG	3 cut(s)	119, 764, 1157
AgsI	TTSAA	5 cut(s)	950, 1030, 1186, 1235, 1307
AjiI	CACGTC	2 cut(s)	175, 1243
AjnI	CCWGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	5 cut(s)	70, 662, 716, 803, 855
AluI	AGCT	5 cut(s)	70, 662, 716, 803, 855
Alw21I	GWGCWC	1 cut(s)	1327
AlwI	GGATC	1 cut(s)	1007
Ama87I	CYCGRG	1 cut(s)	1287
AoxI	GGCC	2 cut(s)	110, 1331
ApeKI	GCWGC	2 cut(s)	656, 659
AspS9I	GGNCC	4 cut(s)	34, 111, 675, 1034
AsuHPI	GGTGA	1 cut(s)	1114
AsuII	TTCGAA	1 cut(s)	1228
AvaI	CYCGRG	1 cut(s)	1287
AvaII	GGWCC	3 cut(s)	34, 675, 1034
BanII	GRGCYC	2 cut(s)	453, 984
BarI	GAAGNNNNNNTAC	2 cut(s)	1153, 1185
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	1327
BbvI	GCAGC	2 cut(s)	668, 671
BccI	CCATC	5 cut(s)	99, 680, 917, 937, 1093
BceAI	ACGGC	2 cut(s)	313, 537
BciT130I	CCWGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	3 cut(s)	285, 875, 920
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	2 cut(s)	657, 660
BlsI	GCNGC	2 cut(s)	658, 661
Bme1390I	CCNGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
Bme18I	GGWCC	3 cut(s)	34, 675, 1034
BmeT110I	CYCGRG	1 cut(s)	1287
BmgBI	CACGTC	2 cut(s)	175, 1243
BmgT120I	GGNCC	4 cut(s)	34, 111, 675, 1034
BmiI	GGNNCC	7 cut(s)	36, 113, 677, 1035, 1116, 1149, 1284
BmrFI	CCNGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
BmrI	ACTGGG	2 cut(s)	270, 965
BmsI	GCATC	4 cut(s)	425, 541, 802, 1126
BmuI	ACTGGG	2 cut(s)	270, 965
BoxI	GACNNNNGTC	1 cut(s)	1063
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	2 cut(s)	593, 867
Bpu14I	TTCGAA	1 cut(s)	1228
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	6 cut(s)	118, 136, 678, 1155, 1286, 1328
BsaWI	WCCGGW	2 cut(s)	31, 1036
BsaXI	ACNNNNNCTCC	3 cut(s)	36, 66, 1331
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 764, 1157
Bse1I	ACTGG	3 cut(s)	265, 625, 960
Bse3DI	GCAATG	2 cut(s)	252, 698
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
BseDI	CCNNGG	6 cut(s)	118, 136, 678, 1155, 1286, 1328
BseGI	GGATG	2 cut(s)	532, 1104
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	119, 764, 1157
BseMI	GCAATG	2 cut(s)	252, 698
BseMII	CTCAG	2 cut(s)	113, 372
BseNI	ACTGG	3 cut(s)	265, 625, 960
BseRI	GAGGAG	2 cut(s)	18, 62
BseXI	GCAGC	2 cut(s)	668, 671
BseYI	CCCAGC	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	112, 1333
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	1327
BsiHKCI	CYCGRG	1 cut(s)	1287
BsiSI	CCGG	2 cut(s)	32, 1037
BslFI	GGGAC	2 cut(s)	20, 1047
BslI	CCNNNNNNNGG	3 cut(s)	119, 764, 1157
BsmFI	GGGAC	2 cut(s)	20, 1047
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	112, 1333
BsoBI	CYCGRG	1 cut(s)	1287
Bsp119I	TTCGAA	1 cut(s)	1228
Bsp1286I	GDGCHC	3 cut(s)	453, 984, 1327
Bsp143I	GATC	5 cut(s)	39, 169, 568, 576, 1012
Bsp19I	CCATGG	3 cut(s)	118, 1155, 1328
BspACI	CCGC	4 cut(s)	55, 61, 378, 624
BspANI	GGCC	2 cut(s)	112, 1333
BspCNI	CTCAG	2 cut(s)	112, 373
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	2 cut(s)	1009, 1189
BspLI	GGNNCC	7 cut(s)	36, 113, 677, 1035, 1116, 1149, 1284
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	1007
BspT104I	TTCGAA	1 cut(s)	1228
BsrDI	GCAATG	2 cut(s)	252, 698
BsrI	ACTGG	3 cut(s)	265, 625, 960
BssECI	CCNNGG	6 cut(s)	118, 136, 678, 1155, 1286, 1328
BssMI	GATC	5 cut(s)	39, 169, 568, 576, 1012
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	4 cut(s)	118, 136, 1155, 1328
Bst1107I	GTATAC	1 cut(s)	370
Bst2UI	CCWGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
Bst4CI	ACNGT	2 cut(s)	464, 1111
BstBI	TTCGAA	1 cut(s)	1228
BstC8I	GCNNGC	2 cut(s)	414, 654
BstDEI	CTNAG	2 cut(s)	99, 381
BstDSI	CCRYGG	3 cut(s)	118, 1155, 1328
BstF5I	GGATG	2 cut(s)	532, 1104
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	5 cut(s)	42, 172, 571, 579, 1015
BstMBI	GATC	5 cut(s)	39, 169, 568, 576, 1012
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 821, 979, 1316
BstNI	CCWGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
BstNSI	RCATGY	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	1063
BstSCI	CCNGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	668, 671
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BstZ17I	GTATAC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	112, 1333
BtgI	CCRYGG	3 cut(s)	118, 1155, 1328
BtrI	CACGTC	2 cut(s)	175, 1243
BtsCI	GGATG	2 cut(s)	532, 1104
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	5 cut(s)	456, 469, 592, 836, 1116
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	414, 654
CciI	TCATGA	2 cut(s)	1009, 1189
Cfr13I	GGNCC	4 cut(s)	34, 111, 675, 1034
Csp6I	GTAC	1 cut(s)	1074
CspCI	CAANNNNNGTGG	2 cut(s)	1068, 1103
CviQI	GTAC	1 cut(s)	1074
DdeI	CTNAG	2 cut(s)	99, 381
DpnI	GATC	5 cut(s)	41, 171, 570, 578, 1014
DpnII	GATC	5 cut(s)	39, 169, 568, 576, 1012
DraI	TTTAAA	1 cut(s)	1210
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	4 cut(s)	118, 136, 1155, 1328
Eco24I	GRGCYC	2 cut(s)	453, 984
Eco47I	GGWCC	3 cut(s)	34, 675, 1034
Eco57I	CTGAAG	2 cut(s)	169, 1082
Eco88I	CYCGRG	1 cut(s)	1287
EcoO109I	RGGNCCY	1 cut(s)	675
EcoRII	CCWGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
EcoT14I	CCWWGG	4 cut(s)	118, 136, 1155, 1328
EcoT22I	ATGCAT	1 cut(s)	870
EcoT38I	GRGCYC	2 cut(s)	453, 984
ErhI	CCWWGG	4 cut(s)	118, 136, 1155, 1328
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	2 cut(s)	20, 1047
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	2 cut(s)	369, 933
Fnu4HI	GCNGC	2 cut(s)	657, 660
FokI	GGATG	2 cut(s)	519, 1111
FriOI	GRGCYC	2 cut(s)	453, 984
Fsp4HI	GCNGC	2 cut(s)	657, 660
FspBI	CTAG	3 cut(s)	285, 875, 920
GluI	GCNGC	2 cut(s)	657, 660
GsaI	CCCAGC	1 cut(s)	859
GsuI	CTGGAG	2 cut(s)	593, 867
HaeIII	GGCC	2 cut(s)	112, 1333
HapII	CCGG	2 cut(s)	32, 1037
HinfI	GANTC	2 cut(s)	22, 896
HpaII	CCGG	2 cut(s)	32, 1037
HphI	GGTGA	1 cut(s)	1114
Hpy166II	GTNNAC	4 cut(s)	370, 425, 774, 934
Hpy188I	TCNGA	5 cut(s)	537, 568, 739, 781, 986
Hpy8I	GTNNAC	4 cut(s)	370, 425, 774, 934
Hpy99I	CGWCG	3 cut(s)	19, 179, 1244
HpyAV	CCTTC	2 cut(s)	1024, 1088
HpyCH4III	ACNGT	2 cut(s)	464, 1111
HpyCH4IV	ACGT	2 cut(s)	174, 1242
HpyCH4V	TGCA	4 cut(s)	445, 532, 656, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 821, 979, 1316
HpyF3I	CTNAG	2 cut(s)	99, 381
HpySE526I	ACGT	2 cut(s)	174, 1242
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	39, 169, 568, 576, 1012
LmnI	GCTCC	6 cut(s)	75, 138, 667, 713, 1114, 1322
Lsp1109I	GCAGC	2 cut(s)	668, 671
LweI	GCATC	4 cut(s)	425, 541, 802, 1126
MaeI	CTAG	3 cut(s)	285, 875, 920
MaeII	ACGT	2 cut(s)	174, 1242
MaeIII	GTNAC	2 cut(s)	197, 556
MalI	GATC	5 cut(s)	41, 171, 570, 578, 1014
MboI	GATC	5 cut(s)	39, 169, 568, 576, 1012
MboII	GAAGA	3 cut(s)	175, 695, 1103
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	453, 984, 1327
MluCI	AATT	2 cut(s)	724, 1230
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	870
MseI	TTAA	3 cut(s)	342, 902, 1209
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	32, 1037
MspR9I	CCNGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	302, 821, 979, 1316
NcoI	CCATGG	3 cut(s)	118, 1155, 1328
NdeII	GATC	5 cut(s)	39, 169, 568, 576, 1012
NlaIV	GGNNCC	7 cut(s)	36, 113, 677, 1035, 1116, 1149, 1284
NmeAIII	GCCGAG	2 cut(s)	88, 322
NsiI	ATGCAT	1 cut(s)	870
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	1228
PaeI	GCATGC	1 cut(s)	656
PagI	TCATGA	2 cut(s)	1009, 1189
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	658, 661
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
PpuMI	RGGWCCY	1 cut(s)	675
PshAI	GACNNNNGTC	1 cut(s)	1063
Psp5II	RGGWCCY	1 cut(s)	675
Psp6I	CCWGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
PspFI	CCCAGC	1 cut(s)	855
PspGI	CCWGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
PspN4I	GGNNCC	7 cut(s)	36, 113, 677, 1035, 1116, 1149, 1284
PspPI	GGNCC	4 cut(s)	34, 111, 675, 1034
PspPPI	RGGWCCY	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	1075
RsaNI	GTAC	1 cut(s)	1074
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	342, 902, 1209
SatI	GCNGC	2 cut(s)	657, 660
Sau3AI	GATC	5 cut(s)	39, 169, 568, 576, 1012
Sau96I	GGNCC	4 cut(s)	34, 111, 675, 1034
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	6 cut(s)	231, 680, 846, 1017, 1056, 1119
SduI	GDGCHC	3 cut(s)	453, 984, 1327
SfaNI	GCATC	4 cut(s)	425, 541, 802, 1126
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	1228
SinI	GGWCC	3 cut(s)	34, 675, 1034
SmiMI	CAYNNNNRTG	1 cut(s)	177
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	2 cut(s)	724, 1230
SsiI	CCGC	4 cut(s)	55, 61, 378, 624
SspMI	CTAG	3 cut(s)	285, 875, 920
StyD4I	CCNGG	6 cut(s)	229, 678, 844, 1015, 1054, 1117
StyI	CCWWGG	4 cut(s)	118, 136, 1155, 1328
TaaI	ACNGT	2 cut(s)	464, 1111
TaiI	ACGT	2 cut(s)	177, 1245
TaqI	TCGA	5 cut(s)	42, 177, 476, 861, 1228
TasI	AATT	2 cut(s)	724, 1230
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	342, 902, 1209
Tru9I	TTAA	3 cut(s)	342, 902, 1209
TscAI	CASTG	5 cut(s)	463, 469, 599, 843, 1116
TseI	GCWGC	2 cut(s)	656, 659
TspDTI	ATGAA	4 cut(s)	420, 958, 1120, 1206
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	5 cut(s)	463, 469, 599, 843, 1116
VpaK11BI	GGWCC	3 cut(s)	34, 675, 1034
XbaI	TCTAGA	1 cut(s)	919
XceI	RCATGY	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	369, 933
XspI	CTAG	3 cut(s)	285, 875, 920
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.