Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017195

Physical Location & Seq

Genomic Coordinates Forward (+)

5939805 .. 5943950

Gene Structure 4146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGCTACGTCATCGTCGCTGACTCCTCCTCCGGTCCCGATCGAACTCCACCTCCGCAACCGCGAAAAGCTCCTCAACTCTATTCGCCACCATCTCTCTCAGTCCTCTCGGCCCCTCCATGGCTTCGTCTTGCTCCAAGGAGGCGAGGAACAAAATCGCTACGATACTGATCACGTCGATGTCTTCAGGCAGGAGAGTTACTTTGCTTACTTGTTTGGAGTAAGAGAGCCTGGTTTCTATGGTGCTATAGACATTGCGACTGGGAAATCTATTCTGTTTTCTCCAAGATTACCTGCCGAGTATGCTGTTTGGTTGGGGGAGATCAAGCCGTTATCCTACTTTAAGGAGAGATATATGGTTAGTGTGGCATACTATACCGATGAGATTACAAAAGTTTTACAAGATGAATGGCAGGCATCTGGTAAACCTTTATTGTTTCTCTTGCATGGGCTCAACACTGACAGTGATAACTTCTCGAAACCAGCAGAGTTTCAGGGGATTGATAACTTTGACACGGACTTGACTACCTTGCATCCGATTTTGACTGAATGCCGTGTTACAAAATCAGATCTGGAGATCGCCCTTATCCAGTTTGCCAATGATATAAGCTCTGAAGCTCATGTCGAGGTCATGAGAAAAGTTAGGGCAGGCATGTATGAGTATCAGCTGGAAAGCATATTTCTTCACCACACCTACATGTATGGTGGCTGTAGACACTGCTCTTATACTTGTATTTGTGCTACCGGCGGAAATAGTGCTGTTCTCCATTATGGGCATGCAGCAGCTCCAAATGACAGGACCCTGGAAGATGGAGATTTGGCATTGCTTGATATGGGAGCTGAATATAATTTTTATGGGTCTGACATAACTTGTTCCTACCCTGTGAATGGAAAGTTTACCTCTGACCAATCCCTTATATACAACGCTGTTCTTGATGCTCACAATGCTGTCATATCGGCACTGAAACCTGGAGTAAGCTGGGTCGATACGCATAAACTAGCAGAAAAGGTTATTCTTGACTCATTAAAGAGAGAGGGCGTTCTAGATGGTAACGTAGACGATATGATGGTTGAACGACTGGGTGCTGTTTTCATGCCTCACGGGCTCGGACATTTTCTTGGTATTGACACTCATGATCCTGGTGGCTACTTGAAGGGACTGGAGAGGATAAAAGAACCTGGACTGAAGTCTTTGCGTACAACAAGACAAGTGGAAGAAGGGATGGTGATAACAGTGGAGCCTGGTTGCTACTTCATAGATGCTTTGTTGGTTCCAGCCATGAGAAGTCCAAATACTACAAAGTTTTTCAATCATGAAGCAGTTGGTAGATTTAAAGGTTTTGGTGGAGTTCGAATTGAAAGCGACGTGCTTATCACAGCCAATAGTTGTAAGAACATGACAAAGGTTCCTCGGGAAATAGGCGAGATTGAAGCAGTCATGGCAGGAGCACCATGGCCTCTTGACAAAGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006082 GO:0006508 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

491

Amino Acids

54.66

Weight (kDa)

5.5

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_N	PF05195	18 - 140	2.4e-25	Aminopeptidase P, N-terminal domain
Peptidase_M24	PF00557	195 - 460	1.1e-55	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29490
fragaria_vesca	FvH4_1g06970 FvH4_1g06970
malus_domestica	MD15G1203700.v1.1
prunus_persica	Prupe.7G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092921
rosa_laevigata	RLG00000016347
rosa_multiflora	Rmu_sc0000965.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148730
rosa_rugosa	Rorug02G0030100
rosa_samantha	Rh2AG076000 Rh2BG077300
rosa_wichuraiana	Rw2G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	712, 1056
AccII	CGCG	1 cut(s)	63
AciI	CCGC	3 cut(s)	55, 61, 747
AclWI	GGATC	1 cut(s)	1130
AcuI	CTGAAG	3 cut(s)	169, 633, 1205
AfaI	GTAC	1 cut(s)	1198
AfiI	CCNNNNNNNGG	2 cut(s)	119, 887
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	5 cut(s)	1073, 1153, 1309, 1358, 1430
AjiI	CACGTC	2 cut(s)	175, 1366
AjnI	CCWGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	7 cut(s)	70, 609, 617, 667, 785, 839, 978
AluI	AGCT	7 cut(s)	70, 609, 617, 667, 785, 839, 978
Alw21I	GWGCWC	1 cut(s)	1450
AlwI	GGATC	1 cut(s)	1130
Ama87I	CYCGRG	1 cut(s)	1410
AoxI	GGCC	2 cut(s)	110, 1454
ApeKI	GCWGC	2 cut(s)	779, 782
AspS9I	GGNCC	3 cut(s)	34, 111, 798
AsuHPI	GGTGA	2 cut(s)	677, 1237
AsuII	TTCGAA	1 cut(s)	1351
AvaI	CYCGRG	1 cut(s)	1410
AvaII	GGWCC	2 cut(s)	34, 798
BanII	GRGCYC	2 cut(s)	453, 1107
BarI	GAAGNNNNNNTAC	2 cut(s)	1276, 1308
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	1450
BbvI	GCAGC	2 cut(s)	791, 794
BccI	CCATC	5 cut(s)	99, 803, 1040, 1060, 1216
BceAI	ACGGC	2 cut(s)	313, 537
BciT130I	CCWGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	2 cut(s)	998, 1043
BfmI	CTRYAG	2 cut(s)	246, 709
BfuAI	ACCTGC	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	1102
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	2 cut(s)	780, 783
BlsI	GCNGC	2 cut(s)	781, 784
Bme1390I	CCNGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
Bme18I	GGWCC	2 cut(s)	34, 798
BmeT110I	CYCGRG	1 cut(s)	1410
BmgBI	CACGTC	2 cut(s)	175, 1366
BmgT120I	GGNCC	3 cut(s)	34, 111, 798
BmiI	GGNNCC	6 cut(s)	36, 113, 800, 1239, 1272, 1407
BmrFI	CCNGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
BmrI	ACTGGG	2 cut(s)	270, 1088
BmsI	GCATC	4 cut(s)	425, 541, 925, 1249
BmuI	ACTGGG	2 cut(s)	270, 1088
BoxI	GACNNNNGTC	1 cut(s)	1186
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	3 cut(s)	593, 990, 1181
Bpu14I	TTCGAA	1 cut(s)	1351
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	5 cut(s)	118, 136, 801, 1409, 1451
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	5 cut(s)	13, 36, 43, 66, 1454
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 887
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	4 cut(s)	265, 589, 1083, 1164
Bse3DI	GCAATG	2 cut(s)	252, 821
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
BseDI	CCNNGG	5 cut(s)	118, 136, 801, 1409, 1451
BseGI	GGATG	2 cut(s)	532, 1227
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	119, 887
BseMI	GCAATG	2 cut(s)	252, 821
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	4 cut(s)	265, 589, 1083, 1164
BseRI	GAGGAG	3 cut(s)	15, 18, 62
BseXI	GCAGC	2 cut(s)	791, 794
BseYI	CCCAGC	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	112, 1456
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	1450
BsiHKCI	CYCGRG	1 cut(s)	1410
BsiSI	CCGG	2 cut(s)	32, 744
BslFI	GGGAC	2 cut(s)	20, 1170
BslI	CCNNNNNNNGG	2 cut(s)	119, 887
BsmFI	GGGAC	2 cut(s)	20, 1170
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	112, 1456
BsoBI	CYCGRG	1 cut(s)	1410
Bsp119I	TTCGAA	1 cut(s)	1351
Bsp1286I	GDGCHC	3 cut(s)	453, 1107, 1450
Bsp143I	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
Bsp19I	CCATGG	2 cut(s)	118, 1451
BspACI	CCGC	3 cut(s)	55, 61, 747
BspANI	GGCC	2 cut(s)	112, 1456
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	3 cut(s)	630, 1132, 1312
BspLI	GGNNCC	6 cut(s)	36, 113, 800, 1239, 1272, 1407
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	1130
BspT104I	TTCGAA	1 cut(s)	1351
BsrDI	GCAATG	2 cut(s)	252, 821
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	4 cut(s)	265, 589, 1083, 1164
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	5 cut(s)	118, 136, 801, 1409, 1451
BssMI	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
BssT1I	CCWWGG	3 cut(s)	118, 136, 1451
Bst2UI	CCWGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
Bst4CI	ACNGT	2 cut(s)	464, 1234
BstBI	TTCGAA	1 cut(s)	1351
BstC8I	GCNNGC	3 cut(s)	414, 649, 777
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	2 cut(s)	118, 1451
BstF5I	GGATG	2 cut(s)	532, 1227
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	6 cut(s)	42, 172, 324, 571, 579, 1138
BstMBI	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 944, 1102, 1439
BstNI	CCWGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
BstNSI	RCATGY	3 cut(s)	655, 700, 779
BstPAI	GACNNNNGTC	1 cut(s)	1186
BstSCI	CCNGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
BstSFI	CTRYAG	2 cut(s)	246, 709
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	791, 794
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	112, 1456
BtgI	CCRYGG	2 cut(s)	118, 1451
BtrI	CACGTC	2 cut(s)	175, 1366
BtsCI	GGATG	2 cut(s)	532, 1227
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	5 cut(s)	456, 469, 715, 959, 1239
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	3 cut(s)	414, 649, 777
CciI	TCATGA	3 cut(s)	630, 1132, 1312
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	3 cut(s)	34, 111, 798
Csp6I	GTAC	1 cut(s)	1197
CspCI	CAANNNNNGTGG	2 cut(s)	1191, 1226
CviQI	GTAC	1 cut(s)	1197
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	6 cut(s)	41, 171, 323, 570, 578, 1137
DpnII	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
DraI	TTTAAA	1 cut(s)	1333
EciI	GGCGGA	1 cut(s)	762
Eco130I	CCWWGG	3 cut(s)	118, 136, 1451
Eco24I	GRGCYC	2 cut(s)	453, 1107
Eco47I	GGWCC	2 cut(s)	34, 798
Eco57I	CTGAAG	3 cut(s)	169, 633, 1205
Eco88I	CYCGRG	1 cut(s)	1410
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRII	CCWGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
EcoT14I	CCWWGG	3 cut(s)	118, 136, 1451
EcoT38I	GRGCYC	2 cut(s)	453, 1107
ErhI	CCWWGG	3 cut(s)	118, 136, 1451
FaqI	GGGAC	2 cut(s)	20, 1170
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	2 cut(s)	712, 1056
Fnu4HI	GCNGC	2 cut(s)	780, 783
FokI	GGATG	2 cut(s)	519, 1234
FriOI	GRGCYC	2 cut(s)	453, 1107
Fsp4HI	GCNGC	2 cut(s)	780, 783
FspBI	CTAG	2 cut(s)	998, 1043
GluI	GCNGC	2 cut(s)	780, 783
GsaI	CCCAGC	1 cut(s)	982
GsuI	CTGGAG	3 cut(s)	593, 990, 1181
HaeIII	GGCC	2 cut(s)	112, 1456
HapII	CCGG	2 cut(s)	32, 744
HinfI	GANTC	2 cut(s)	22, 1019
HpaII	CCGG	2 cut(s)	32, 744
HphI	GGTGA	2 cut(s)	677, 1237
Hpy166II	GTNNAC	4 cut(s)	425, 713, 897, 1057
Hpy188I	TCNGA	6 cut(s)	537, 568, 613, 862, 904, 1109
Hpy8I	GTNNAC	4 cut(s)	425, 713, 897, 1057
Hpy99I	CGWCG	3 cut(s)	19, 179, 1367
HpyAV	CCTTC	2 cut(s)	1147, 1211
HpyCH4III	ACNGT	2 cut(s)	464, 1234
HpyCH4IV	ACGT	4 cut(s)	8, 174, 1053, 1365
HpyCH4V	TGCA	3 cut(s)	445, 532, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 944, 1102, 1439
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	4 cut(s)	8, 174, 1053, 1365
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
LmnI	GCTCC	6 cut(s)	75, 138, 790, 836, 1237, 1445
Lsp1109I	GCAGC	2 cut(s)	791, 794
LweI	GCATC	4 cut(s)	425, 541, 925, 1249
MaeI	CTAG	2 cut(s)	998, 1043
MaeII	ACGT	4 cut(s)	8, 174, 1053, 1365
MaeIII	GTNAC	3 cut(s)	197, 556, 1049
MalI	GATC	6 cut(s)	41, 171, 323, 570, 578, 1137
MboI	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
MboII	GAAGA	4 cut(s)	175, 674, 818, 1226
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	453, 1107, 1450
MluCI	AATT	2 cut(s)	847, 1353
MlyI	GAGTC	2 cut(s)	16, 1013
MseI	TTAA	3 cut(s)	342, 1025, 1332
MslI	CAYNNNNRTG	2 cut(s)	177, 695
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	2 cut(s)	32, 744
MspR9I	CCNGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	302, 944, 1102, 1439
NcoI	CCATGG	2 cut(s)	118, 1451
NdeII	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
NlaIV	GGNNCC	6 cut(s)	36, 113, 800, 1239, 1272, 1407
NmeAIII	GCCGAG	2 cut(s)	88, 322
NspI	RCATGY	3 cut(s)	655, 700, 779
NspV	TTCGAA	1 cut(s)	1351
PaeI	GCATGC	1 cut(s)	779
PagI	TCATGA	3 cut(s)	630, 1132, 1312
PciI	ACATGT	1 cut(s)	696
PctI	GAATGC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	781, 784
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	2 cut(s)	16, 1013
PpsI	GAGTC	2 cut(s)	16, 1013
PpuMI	RGGWCCY	1 cut(s)	798
PscI	ACATGT	1 cut(s)	696
PshAI	GACNNNNGTC	1 cut(s)	1186
Psp5II	RGGWCCY	1 cut(s)	798
Psp6I	CCWGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
PspFI	CCCAGC	1 cut(s)	978
PspGI	CCWGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
PspN4I	GGNNCC	6 cut(s)	36, 113, 800, 1239, 1272, 1407
PspPI	GGNCC	3 cut(s)	34, 111, 798
PspPPI	RGGWCCY	1 cut(s)	798
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	1 cut(s)	1198
RsaNI	GTAC	1 cut(s)	1197
RseI	CAYNNNNRTG	2 cut(s)	177, 695
SaqAI	TTAA	3 cut(s)	342, 1025, 1332
SatI	GCNGC	2 cut(s)	780, 783
Sau3AI	GATC	6 cut(s)	39, 169, 321, 568, 576, 1135
Sau96I	GGNCC	3 cut(s)	34, 111, 798
SchI	GAGTC	2 cut(s)	16, 1013
ScrFI	CCNGG	6 cut(s)	231, 803, 969, 1140, 1179, 1242
SduI	GDGCHC	3 cut(s)	453, 1107, 1450
SfaNI	GCATC	4 cut(s)	425, 541, 925, 1249
SfcI	CTRYAG	2 cut(s)	246, 709
SfuI	TTCGAA	1 cut(s)	1351
SinI	GGWCC	2 cut(s)	34, 798
SmiMI	CAYNNNNRTG	2 cut(s)	177, 695
SphI	GCATGC	1 cut(s)	779
Sse9I	AATT	2 cut(s)	847, 1353
SsiI	CCGC	3 cut(s)	55, 61, 747
SspMI	CTAG	2 cut(s)	998, 1043
StyD4I	CCNGG	6 cut(s)	229, 801, 967, 1138, 1177, 1240
StyI	CCWWGG	3 cut(s)	118, 136, 1451
TaaI	ACNGT	2 cut(s)	464, 1234
TaiI	ACGT	4 cut(s)	11, 177, 1056, 1368
TaqI	TCGA	6 cut(s)	42, 177, 476, 624, 984, 1351
TasI	AATT	2 cut(s)	847, 1353
Tru1I	TTAA	3 cut(s)	342, 1025, 1332
Tru9I	TTAA	3 cut(s)	342, 1025, 1332
TscAI	CASTG	5 cut(s)	463, 469, 722, 966, 1239
TseI	GCWGC	2 cut(s)	779, 782
TspDTI	ATGAA	4 cut(s)	420, 1081, 1243, 1329
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	5 cut(s)	463, 469, 722, 966, 1239
VpaK11BI	GGWCC	2 cut(s)	34, 798
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	3 cut(s)	655, 700, 779
XmiI	GTMKAC	2 cut(s)	712, 1056
XspI	CTAG	2 cut(s)	998, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.