Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017195

Physical Location & Seq

Genomic Coordinates Reverse (-)

2431473 .. 2431949

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGCAGGTACAGTACCTGCAGAAGAAAGTGGACGACGCGTTGAGTAGCTACAATGAGTTGGTGAAGGAGGATCCCAAAGACTTTCGGCCTTATTTTTGTAGGGGAATGATTTACAGCTTGCTTGAGAGGAATGAAGAGGCCAAGGAGCAGTTTGATAAGTACCGGCAGCTTTCGCCGAAGAAGTTTGAGGTGGATGGATACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006082 GO:0006508 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

84

Amino Acids

10.05

Weight (kDa)

6.27

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29490
fragaria_vesca	FvH4_1g06970 FvH4_1g06970
malus_domestica	MD15G1203700.v1.1
prunus_persica	Prupe.7G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092921
rosa_laevigata	RLG00000016347
rosa_multiflora	Rmu_sc0000965.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148730
rosa_rugosa	Rorug02G0030100
rosa_samantha	Rh2AG076000 Rh2BG077300
rosa_wichuraiana	Rw2G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	2 cut(s)	68, 81
AfaI	GTAC	3 cut(s)	12, 17, 164
AflIII	ACRYGT	1 cut(s)	39
AluBI	AGCT	4 cut(s)	51, 120, 172, 232
AluI	AGCT	4 cut(s)	51, 120, 172, 232
AlwI	GGATC	2 cut(s)	68, 81
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	2 cut(s)	89, 141
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	91, 143
BsiSI	CCGG	1 cut(s)	166
BsnI	GGCC	2 cut(s)	91, 143
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	91, 143
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	68, 81
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	91, 143
BtsCI	GGATG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	165
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	11, 16, 163
CviJI	RGCY	7 cut(s)	51, 91, 120, 143, 172, 214, 232
CviKI_1	RGCY	7 cut(s)	51, 91, 120, 143, 172, 214, 232
CviQI	GTAC	3 cut(s)	11, 16, 163
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	170
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	91, 143
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	222, 238
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	148, 240
LpnPI	CCDG	2 cut(s)	32, 179
Lsp1109I	GCAGC	1 cut(s)	181
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	37, 149, 193
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	250
MluI	ACGCGT	1 cut(s)	39
MnlI	CCTC	4 cut(s)	64, 123, 133, 184
MspI	CCGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	12, 17, 164
RsaNI	GTAC	3 cut(s)	11, 16, 163
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	73
SetI	ASST	7 cut(s)	12, 21, 53, 122, 174, 195, 234
SfcI	CTRYAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	150, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.