Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017195

Physical Location & Seq

Genomic Coordinates Forward (+)

5804036 .. 5845105

Gene Structure 41070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCTTCGTCATCGTCGCTGACTCCTCCTCTAGTCCCGATCGAACTCCACCTCCGCAACCGCGAAAAGCTCCTCAACTCTATTCGCCACCATCTCTCTCAGTCCTCTCGGCCTCTCCATGGCTTCGTCTTGCTCCAAGGAGGCGAGGAACAAAATCGCTACGATACTGATCACGTCGATGTCTTCAGGCAGGAGAGTTACTTTGCTTACTTGTTTGGAGTAAGAGAGCCTGGTTTCTATGGTGCTATAGTAAACATTGCGACTGGGAAATCTATTATGTTTTCTCCTAGATTACCTGCCGAGTATGCTGTTTGGTTGGGGGAGATAAAGCCGTTATCCTACTTTAAGGAGAGATATATGATTAGTGTGGCATGCTATACGGATGAGATCACGAAAGTTTTACAAGATGAATGGCAGGGGATTGATAACTTTGACACGGACTTGACTACCTTGCATCCGATTTTGACTGAATGCCGTGTTACAAAATCAGATCTGGAGATCGCCCTTATCCAGTTTGCCAATGATACAAGCTCTGAAGCTCATGTCGAGGTCATGAGAAAAGTTAGGGCAGGCATGTATGAGTATCAGCTGGAAAGCATATTTCTTCACCACTCCTACATGTATGGTGGCTGTAGACACTGCTCTTATACTTGTATTTGTGCTACTGGCGGAAATAGTGCTGTTCTCCATTATGGGCATGCCGCAGCTCCAAATGACAGGACCCTGGAAGATGGAGATTTGGCATTGCTTGATATGGGAGCTGAATATAATTTTTATGGGTCTGACATAACTTGTTCCTACCCTGTGAATGGAAAGTTTACCTCTGACCAATCCCTTATATACAACGCTGTGCTTGATGCTCACAATGCTGTCATATCGGCACTGAAACCTGGAGTAAGCTGGGTCGATATGCATAAACTAGCAGAAAAGGTTATTCTTGACTCATTAAAGAGAGAGGGTGTTCTAGATGGTAACGTAGACGATATGATGGTTGAACGACTGGGTGCTGTTTTCATGCCTCACGGGCTCGGACATTTGCTTGGTATTGACACTCATGATCCTGGTGGCTACTTGAAGGGACCGGAGAGGATAAAAGAACCTGGACTGAAGTCTTTGCGTACAACAAGACAAATGCAAGAAGGGATGGTGATAACAGTGGAGCCTGGTTGCTACTTCATAGATGCTTTGTTGGTTCCAGCCATGGGAAGTCCAAATACTACAAAGTTTTTCAATCATGAAGCAGTTGGTAGATTTAAAGGTTTTGGTGGAGTTCGAATTGAAAGCGACGTGCTTATCACAGCCAATAGTTGTAAGAACATGACAAAGGTTCCTCGGGAAATAGGCGAGATTGAAGCAGTCATGGCAGGAGCACCATGGCCTCTTGACAAAGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006082 GO:0006508 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

466

Amino Acids

51.69

Weight (kDa)

5.56

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_N	PF05195	18 - 138	1.9e-23	Aminopeptidase P, N-terminal domain
Peptidase_M24	PF00557	169 - 434	2e-55	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29490
fragaria_vesca	FvH4_1g06970 FvH4_1g06970
malus_domestica	MD15G1203700.v1.1
prunus_persica	Prupe.7G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092921
rosa_laevigata	RLG00000016347
rosa_multiflora	Rmu_sc0000965.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148730
rosa_rugosa	Rorug02G0030100
rosa_samantha	Rh2AG076000 Rh2BG077300
rosa_wichuraiana	Rw2G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccI	GTMKAC	2 cut(s)	634, 978
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	55, 61, 669, 702
AclWI	GGATC	1 cut(s)	1052
AcuI	CTGAAG	3 cut(s)	169, 555, 1127
AfaI	GTAC	1 cut(s)	1120
AfiI	CCNNNNNNNGG	3 cut(s)	119, 809, 1202
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	5 cut(s)	995, 1075, 1231, 1280, 1352
AjiI	CACGTC	2 cut(s)	175, 1288
AjnI	CCWGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	7 cut(s)	70, 531, 539, 589, 707, 761, 900
AluI	AGCT	7 cut(s)	70, 531, 539, 589, 707, 761, 900
Alw21I	GWGCWC	1 cut(s)	1372
AlwI	GGATC	1 cut(s)	1052
Ama87I	CYCGRG	1 cut(s)	1332
AoxI	GGCC	2 cut(s)	110, 1376
ApeKI	GCWGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	720, 1079
AsuHPI	GGTGA	2 cut(s)	599, 1159
AsuII	TTCGAA	1 cut(s)	1273
AvaI	CYCGRG	1 cut(s)	1332
AvaII	GGWCC	2 cut(s)	720, 1079
BanII	GRGCYC	1 cut(s)	1029
BarI	GAAGNNNNNNTAC	2 cut(s)	1198, 1230
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	1372
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	5 cut(s)	99, 725, 962, 982, 1138
BceAI	ACGGC	2 cut(s)	316, 459
BciT130I	CCWGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	4 cut(s)	32, 288, 920, 965
BfmI	CTRYAG	2 cut(s)	246, 631
BfuAI	ACCTGC	1 cut(s)	304
BglI	GCCNNNNNGGC	1 cut(s)	1024
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	2 cut(s)	702, 705
BlsI	GCNGC	2 cut(s)	703, 706
Bme1390I	CCNGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
Bme18I	GGWCC	2 cut(s)	720, 1079
BmeT110I	CYCGRG	1 cut(s)	1332
BmgBI	CACGTC	2 cut(s)	175, 1288
BmgT120I	GGNCC	2 cut(s)	720, 1079
BmiI	GGNNCC	5 cut(s)	722, 1080, 1161, 1194, 1329
BmrFI	CCNGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
BmrI	ACTGGG	2 cut(s)	273, 1010
BmsI	GCATC	3 cut(s)	463, 847, 1171
BmuI	ACTGGG	2 cut(s)	273, 1010
BoxI	GACNNNNGTC	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	2 cut(s)	515, 912
Bpu14I	TTCGAA	1 cut(s)	1273
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	6 cut(s)	118, 136, 723, 1200, 1331, 1373
BsaWI	WCCGGW	1 cut(s)	1081
BsaXI	ACNNNNNCTCC	3 cut(s)	36, 66, 1376
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 809, 1202
Bse1I	ACTGG	4 cut(s)	268, 511, 670, 1005
Bse3DI	GCAATG	2 cut(s)	255, 743
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
BseDI	CCNNGG	6 cut(s)	118, 136, 723, 1200, 1331, 1373
BseGI	GGATG	3 cut(s)	388, 454, 1149
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	119, 809, 1202
BseMI	GCAATG	2 cut(s)	255, 743
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	4 cut(s)	268, 511, 670, 1005
BseRI	GAGGAG	3 cut(s)	15, 18, 62
BseXI	GCAGC	1 cut(s)	716
BseYI	CCCAGC	1 cut(s)	900
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	112, 1378
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	1372
BsiHKCI	CYCGRG	1 cut(s)	1332
BsiSI	CCGG	1 cut(s)	1082
BslFI	GGGAC	2 cut(s)	20, 1092
BslI	CCNNNNNNNGG	3 cut(s)	119, 809, 1202
BsmFI	GGGAC	2 cut(s)	20, 1092
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	112, 1378
BsoBI	CYCGRG	1 cut(s)	1332
Bsp119I	TTCGAA	1 cut(s)	1273
Bsp1286I	GDGCHC	2 cut(s)	1029, 1372
Bsp143I	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
Bsp19I	CCATGG	3 cut(s)	118, 1200, 1373
BspACI	CCGC	4 cut(s)	55, 61, 669, 702
BspANI	GGCC	2 cut(s)	112, 1378
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	3 cut(s)	552, 1054, 1234
BspLI	GGNNCC	5 cut(s)	722, 1080, 1161, 1194, 1329
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	1052
BspT104I	TTCGAA	1 cut(s)	1273
BsrDI	GCAATG	2 cut(s)	255, 743
BsrI	ACTGG	4 cut(s)	268, 511, 670, 1005
BssECI	CCNNGG	6 cut(s)	118, 136, 723, 1200, 1331, 1373
BssMI	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
BssT1I	CCWWGG	4 cut(s)	118, 136, 1200, 1373
Bst2UI	CCWGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
Bst4CI	ACNGT	1 cut(s)	1156
BstBI	TTCGAA	1 cut(s)	1273
BstC8I	GCNNGC	3 cut(s)	373, 571, 699
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	3 cut(s)	118, 1200, 1373
BstF5I	GGATG	3 cut(s)	388, 454, 1149
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	6 cut(s)	42, 172, 390, 493, 501, 1060
BstMBI	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 866, 1024, 1361
BstNI	CCWGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
BstNSI	RCATGY	4 cut(s)	375, 577, 622, 701
BstPAI	GACNNNNGTC	1 cut(s)	1108
BstSCI	CCNGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
BstSFI	CTRYAG	2 cut(s)	246, 631
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	716
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	112, 1378
BtgI	CCRYGG	3 cut(s)	118, 1200, 1373
BtrI	CACGTC	2 cut(s)	175, 1288
BtsCI	GGATG	3 cut(s)	388, 454, 1149
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	3 cut(s)	637, 881, 1161
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	373, 571, 699
CciI	TCATGA	3 cut(s)	552, 1054, 1234
Cfr13I	GGNCC	2 cut(s)	720, 1079
Csp6I	GTAC	1 cut(s)	1119
CviQI	GTAC	1 cut(s)	1119
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	6 cut(s)	41, 171, 389, 492, 500, 1059
DpnII	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
DraI	TTTAAA	1 cut(s)	1255
EciI	GGCGGA	1 cut(s)	684
Eco130I	CCWWGG	4 cut(s)	118, 136, 1200, 1373
Eco24I	GRGCYC	1 cut(s)	1029
Eco47I	GGWCC	2 cut(s)	720, 1079
Eco57I	CTGAAG	3 cut(s)	169, 555, 1127
Eco88I	CYCGRG	1 cut(s)	1332
EcoO109I	RGGNCCY	1 cut(s)	720
EcoRII	CCWGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
EcoT14I	CCWWGG	4 cut(s)	118, 136, 1200, 1373
EcoT22I	ATGCAT	1 cut(s)	915
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	4 cut(s)	118, 136, 1200, 1373
FaqI	GGGAC	2 cut(s)	20, 1092
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	2 cut(s)	634, 978
Fnu4HI	GCNGC	2 cut(s)	702, 705
FokI	GGATG	3 cut(s)	395, 441, 1156
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	2 cut(s)	702, 705
FspBI	CTAG	4 cut(s)	32, 288, 920, 965
GluI	GCNGC	2 cut(s)	702, 705
GsaI	CCCAGC	1 cut(s)	904
GsuI	CTGGAG	2 cut(s)	515, 912
HaeIII	GGCC	2 cut(s)	112, 1378
HapII	CCGG	1 cut(s)	1082
HinfI	GANTC	2 cut(s)	22, 941
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	2 cut(s)	599, 1159
Hpy166II	GTNNAC	4 cut(s)	253, 635, 819, 979
Hpy188I	TCNGA	6 cut(s)	459, 490, 535, 784, 826, 1031
Hpy8I	GTNNAC	4 cut(s)	253, 635, 819, 979
Hpy99I	CGWCG	3 cut(s)	19, 179, 1289
HpyAV	CCTTC	2 cut(s)	1069, 1133
HpyCH4III	ACNGT	1 cut(s)	1156
HpyCH4IV	ACGT	3 cut(s)	174, 975, 1287
HpyCH4V	TGCA	3 cut(s)	454, 913, 1135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 866, 1024, 1361
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	3 cut(s)	174, 975, 1287
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
LmnI	GCTCC	6 cut(s)	75, 138, 712, 758, 1159, 1367
Lsp1109I	GCAGC	1 cut(s)	716
LweI	GCATC	3 cut(s)	463, 847, 1171
MaeI	CTAG	4 cut(s)	32, 288, 920, 965
MaeII	ACGT	3 cut(s)	174, 975, 1287
MaeIII	GTNAC	3 cut(s)	197, 478, 971
MalI	GATC	6 cut(s)	41, 171, 389, 492, 500, 1059
MboI	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
MboII	GAAGA	3 cut(s)	175, 596, 740
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	1029, 1372
MluCI	AATT	2 cut(s)	769, 1275
MlyI	GAGTC	2 cut(s)	16, 935
Mph1103I	ATGCAT	1 cut(s)	915
MseI	TTAA	3 cut(s)	345, 947, 1254
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	305, 866, 1024, 1361
NcoI	CCATGG	3 cut(s)	118, 1200, 1373
NdeII	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
NlaIV	GGNNCC	5 cut(s)	722, 1080, 1161, 1194, 1329
NmeAIII	GCCGAG	2 cut(s)	88, 325
NsiI	ATGCAT	1 cut(s)	915
NspI	RCATGY	4 cut(s)	375, 577, 622, 701
NspV	TTCGAA	1 cut(s)	1273
PaeI	GCATGC	2 cut(s)	375, 701
PagI	TCATGA	3 cut(s)	552, 1054, 1234
PciI	ACATGT	1 cut(s)	618
PctI	GAATGC	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	703, 706
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	2 cut(s)	16, 935
PpsI	GAGTC	2 cut(s)	16, 935
PpuMI	RGGWCCY	1 cut(s)	720
PscI	ACATGT	1 cut(s)	618
PshAI	GACNNNNGTC	1 cut(s)	1108
Psp5II	RGGWCCY	1 cut(s)	720
Psp6I	CCWGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
PspFI	CCCAGC	1 cut(s)	900
PspGI	CCWGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
PspN4I	GGNNCC	5 cut(s)	722, 1080, 1161, 1194, 1329
PspPI	GGNCC	2 cut(s)	720, 1079
PspPPI	RGGWCCY	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	1120
RsaNI	GTAC	1 cut(s)	1119
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	345, 947, 1254
SatI	GCNGC	2 cut(s)	702, 705
Sau3AI	GATC	6 cut(s)	39, 169, 387, 490, 498, 1057
Sau96I	GGNCC	2 cut(s)	720, 1079
SchI	GAGTC	2 cut(s)	16, 935
ScrFI	CCNGG	6 cut(s)	231, 725, 891, 1062, 1101, 1164
SduI	GDGCHC	2 cut(s)	1029, 1372
SfaNI	GCATC	3 cut(s)	463, 847, 1171
SfcI	CTRYAG	2 cut(s)	246, 631
SfuI	TTCGAA	1 cut(s)	1273
SinI	GGWCC	2 cut(s)	720, 1079
SmiMI	CAYNNNNRTG	1 cut(s)	177
SphI	GCATGC	2 cut(s)	375, 701
Sse9I	AATT	2 cut(s)	769, 1275
SsiI	CCGC	4 cut(s)	55, 61, 669, 702
SspMI	CTAG	4 cut(s)	32, 288, 920, 965
StyD4I	CCNGG	6 cut(s)	229, 723, 889, 1060, 1099, 1162
StyI	CCWWGG	4 cut(s)	118, 136, 1200, 1373
TaaI	ACNGT	1 cut(s)	1156
TaiI	ACGT	3 cut(s)	177, 978, 1290
TaqI	TCGA	5 cut(s)	42, 177, 546, 906, 1273
TasI	AATT	2 cut(s)	769, 1275
TauI	GCSGC	1 cut(s)	704
Tru1I	TTAA	3 cut(s)	345, 947, 1254
Tru9I	TTAA	3 cut(s)	345, 947, 1254
TscAI	CASTG	3 cut(s)	644, 888, 1161
TseI	GCWGC	1 cut(s)	704
TspDTI	ATGAA	4 cut(s)	423, 1003, 1165, 1251
TspGWI	ACGGA	2 cut(s)	395, 452
TspRI	CASTG	3 cut(s)	644, 888, 1161
VpaK11BI	GGWCC	2 cut(s)	720, 1079
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	4 cut(s)	375, 577, 622, 701
XmiI	GTMKAC	2 cut(s)	634, 978
XspI	CTAG	4 cut(s)	32, 288, 920, 965
Zsp2I	ATGCAT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.