Rh2AG076000

xaa-Pro dipeptidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
6403226 .. 6407356
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG076000.1

Sequence Viewer

Length: 1476 bp
ATGGCTTCGTCATCGTCGCTGATTCCTCCTCCGGTCCCGATCGAACTCCACCTCCGCAACCGCGAAAAGCTCCTCAACTCTATTCGCCACCATCTCTCTCAGTCCTCTCGGCCCCTCCATGGCTTCGTCTTGCTCCAAGGAGGCGAGGAACAAAATCGCTACGATACTGATCACGTCGATGTCTTCAGGCAGGAGAGTTACTTTGCTTACTTGTTTGGAGTAAGAGAGCCTGGTTTCTATGGCGCTATAGACATTGCGACTGGGAAATCTATTCTGTTTTCTCCTAGATTACCTGCCGAGTATGCTGTTTGGTTGGGGGAGATAAAGCCGTTATCCTACTTTAAGGAGAGATATATGGTTAGTGTGGTATACTATACCGATGAGATTACAAAAGTTTTACAAGATGAATCGCAGGCATCTGGTAAACCTTTATTGTTTCTCCTGCATGGGCTCAACACTGACAGTGATAACTTCTCGAAACCAGCAGAGTTTCAGGGGATTGATAACTTTGACACGGACTTGACTACCTTGCATCCGATTTTGACTGAATGCCGTGTTACAAAATCAGATCTGGAGATCGCCCTTATCCAGTTTGCCAATGATATAAGCTCTGAAGCTCATGTCGAGGTCATGAGAAAAGTTAGGGCAGGCATGTATGAGTATCAGCTGGAAAGCATATTTCTTCACCACACCTACATGTATGGTGGCTGTAGACACTGCTCTTATACATGTATTTGTGCTACTGGCGGAAATAGTGCTGTTCTCCATTATGGGCATGCAGCAGCTCCAAATGACAGGACCCTGGAAGATGGAGATTTGGCATTGCTTGATATGGGAGCTGAATATAATTTTTATGGGTCTGACATAACTTGTTCCTACCCTGTGAATGGAAAGTTTACCTCTGACCAATCCCTTATATACAACGCTGTTCTTGATGCTCACAATGCTGTCATATCGGCACTGAAACCTGGAGTAAGCTGGGTCGATATGCATAAACTAGCAGAAAAGGTTATTCTTGACTCATTAAAGAGAGAGGGCGTTCTAGATGGTAATGTAGACGATATGATGGTTGAACGACTGGGTGCTGTTTTCATGCCTCACGGGCTCGGACATTTGCTTGGTATTGACACTCATGATCCTGGTGGCTACTTGAAGGGACCGGAGAGGATAAAAGAACCTGGACTGAAGTCTTTGCGTACAACAAGACAAGTGGAAGAAGGGATGGTGATAACAGTGGAGCCTGGTTGCTACTTCATAGATGCTTTGTTGGTTCCAGCCATGGGAAGTCCAAATACTACAAAGTTTTTCAATCATGAAGCAGTTGGTAGATTTAAAGGTTTTGGTGGAGTTAGAATTGAAAGCGACGTGCTAATCACAGCCAATAGTTGTAAGAACATGACAAAGGTTCCTCGGGAAATAGGCGAGATTGAAGCAGTCATGGCAGGAGCACCATGGCCTCTTGACAAAGCCTCCTAA

Protein Analysis

491

Amino Acids

54.46

Weight (kDa)

5.44

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_N PF05195 18 - 139 2.1e-25 Aminopeptidase P, N-terminal domain
Peptidase_M24 PF00557 195 - 460 3.2e-56 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29490
fragaria_vesca FvH4_1g06970 FvH4_1g06970
malus_domestica MD15G1203700.v1.1
prunus_persica Prupe.7G213700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092921
rosa_laevigata RLG00000016347
rosa_multiflora Rmu_sc0000965.1_g000005
rosa_roxburghii Rroxscaffold_2G00148730
rosa_rugosa Rorug02G0030100
rosa_samantha Rh2AG076000 Rh2BG077300
rosa_wichuraiana Rw2G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 3 cut(s) 369, 712, 1056
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 55, 61, 747
AclWI GGATC 1 cut(s) 1130
AcuI CTGAAG 3 cut(s) 169, 633, 1205
AfaI GTAC 1 cut(s) 1198
AfiI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
AflIII ACRYGT 2 cut(s) 696, 728
AgsI TTSAA 5 cut(s) 1073, 1153, 1309, 1358, 1430
AjiI CACGTC 2 cut(s) 175, 1366
AjnI CCWGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
AloI GAACNNNNNNTCC 2 cut(s) 36, 68
AluBI AGCT 7 cut(s) 70, 609, 617, 667, 785, 839, 978
AluI AGCT 7 cut(s) 70, 609, 617, 667, 785, 839, 978
Alw21I GWGCWC 1 cut(s) 1450
AlwI GGATC 1 cut(s) 1130
Ama87I CYCGRG 1 cut(s) 1410
AoxI GGCC 2 cut(s) 110, 1454
ApeKI GCWGC 2 cut(s) 779, 782
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 4 cut(s) 34, 111, 798, 1157
AsuHPI GGTGA 2 cut(s) 677, 1237
AvaI CYCGRG 1 cut(s) 1410
AvaII GGWCC 3 cut(s) 34, 798, 1157
BanII GRGCYC 2 cut(s) 453, 1107
BarI GAAGNNNNNNTAC 2 cut(s) 1276, 1308
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 1450
BbvI GCAGC 2 cut(s) 791, 794
BccI CCATC 5 cut(s) 99, 803, 1040, 1060, 1216
BceAI ACGGC 2 cut(s) 313, 537
BciT130I CCWGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
BclI TGATCA 1 cut(s) 169
BfaI CTAG 3 cut(s) 285, 998, 1043
BfmI CTRYAG 2 cut(s) 246, 709
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 1102
BglII AGATCT 1 cut(s) 568
BisI GCNGC 2 cut(s) 780, 783
BlsI GCNGC 2 cut(s) 781, 784
Bme1390I CCNGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
Bme18I GGWCC 3 cut(s) 34, 798, 1157
BmeT110I CYCGRG 1 cut(s) 1410
BmgBI CACGTC 2 cut(s) 175, 1366
BmgT120I GGNCC 4 cut(s) 34, 111, 798, 1157
BmiI GGNNCC 7 cut(s) 36, 113, 800, 1158, 1239, 1272, 1407
BmrFI CCNGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
BmrI ACTGGG 2 cut(s) 270, 1088
BmsI GCATC 4 cut(s) 425, 541, 925, 1249
BmuI ACTGGG 2 cut(s) 270, 1088
BoxI GACNNNNGTC 1 cut(s) 1186
BpiI GAAGAC 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 593, 990
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 6 cut(s) 118, 136, 801, 1278, 1409, 1451
BsaWI WCCGGW 2 cut(s) 31, 1159
BsaXI ACNNNNNCTCC 3 cut(s) 36, 66, 1454
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 887, 1280
Bse1I ACTGG 4 cut(s) 265, 589, 748, 1083
Bse3DI GCAATG 2 cut(s) 252, 821
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
BseDI CCNNGG 6 cut(s) 118, 136, 801, 1278, 1409, 1451
BseGI GGATG 2 cut(s) 532, 1227
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
BseMI GCAATG 2 cut(s) 252, 821
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 4 cut(s) 265, 589, 748, 1083
BseRI GAGGAG 2 cut(s) 18, 62
BseXI GCAGC 2 cut(s) 791, 794
BseYI CCCAGC 1 cut(s) 978
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 112, 1456
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 1450
BsiHKCI CYCGRG 1 cut(s) 1410
BsiSI CCGG 2 cut(s) 32, 1160
BslFI GGGAC 2 cut(s) 20, 1170
BslI CCNNNNNNNGG 3 cut(s) 119, 887, 1280
BsmFI GGGAC 2 cut(s) 20, 1170
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 2 cut(s) 112, 1456
BsoBI CYCGRG 1 cut(s) 1410
Bsp1286I GDGCHC 3 cut(s) 453, 1107, 1450
Bsp143I GATC 5 cut(s) 39, 169, 568, 576, 1135
Bsp19I CCATGG 3 cut(s) 118, 1278, 1451
BspACI CCGC 3 cut(s) 55, 61, 747
BspANI GGCC 2 cut(s) 112, 1456
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 3 cut(s) 630, 1132, 1312
BspLI GGNNCC 7 cut(s) 36, 113, 800, 1158, 1239, 1272, 1407
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 1130
BsrDI GCAATG 2 cut(s) 252, 821
BsrI ACTGG 4 cut(s) 265, 589, 748, 1083
BssECI CCNNGG 6 cut(s) 118, 136, 801, 1278, 1409, 1451
BssMI GATC 5 cut(s) 39, 169, 568, 576, 1135
BssNAI GTATAC 1 cut(s) 370
BssT1I CCWWGG 4 cut(s) 118, 136, 1278, 1451
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
Bst4CI ACNGT 2 cut(s) 464, 1234
BstC8I GCNNGC 3 cut(s) 414, 649, 777
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 3 cut(s) 118, 1278, 1451
BstF5I GGATG 2 cut(s) 532, 1227
BstFNI CGCG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 5 cut(s) 42, 172, 571, 579, 1138
BstMBI GATC 5 cut(s) 39, 169, 568, 576, 1135
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 4 cut(s) 302, 944, 1102, 1439
BstNI CCWGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
BstNSI RCATGY 4 cut(s) 655, 700, 732, 779
BstPAI GACNNNNGTC 1 cut(s) 1186
BstSCI CCNGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
BstSFI CTRYAG 2 cut(s) 246, 709
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 791, 794
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 112, 1456
BtgI CCRYGG 3 cut(s) 118, 1278, 1451
BtrI CACGTC 2 cut(s) 175, 1366
BtsCI GGATG 2 cut(s) 532, 1227
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 5 cut(s) 456, 469, 715, 959, 1239
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 414, 649, 777
CciI TCATGA 3 cut(s) 630, 1132, 1312
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 4 cut(s) 34, 111, 798, 1157
Csp6I GTAC 1 cut(s) 1197
CspCI CAANNNNNGTGG 2 cut(s) 1191, 1226
CviQI GTAC 1 cut(s) 1197
DdeI CTNAG 1 cut(s) 99
DpnI GATC 5 cut(s) 41, 171, 570, 578, 1137
DpnII GATC 5 cut(s) 39, 169, 568, 576, 1135
DraI TTTAAA 1 cut(s) 1333
EciI GGCGGA 1 cut(s) 762
Eco130I CCWWGG 4 cut(s) 118, 136, 1278, 1451
Eco24I GRGCYC 2 cut(s) 453, 1107
Eco47I GGWCC 3 cut(s) 34, 798, 1157
Eco57I CTGAAG 3 cut(s) 169, 633, 1205
Eco88I CYCGRG 1 cut(s) 1410
EcoO109I RGGNCCY 1 cut(s) 798
EcoRII CCWGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
EcoT14I CCWWGG 4 cut(s) 118, 136, 1278, 1451
EcoT22I ATGCAT 1 cut(s) 993
EcoT38I GRGCYC 2 cut(s) 453, 1107
ErhI CCWWGG 4 cut(s) 118, 136, 1278, 1451
FaqI GGGAC 2 cut(s) 20, 1170
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 3 cut(s) 369, 712, 1056
Fnu4HI GCNGC 2 cut(s) 780, 783
FokI GGATG 2 cut(s) 519, 1234
FriOI GRGCYC 2 cut(s) 453, 1107
Fsp4HI GCNGC 2 cut(s) 780, 783
FspBI CTAG 3 cut(s) 285, 998, 1043
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 780, 783
GsaI CCCAGC 1 cut(s) 982
GsuI CTGGAG 2 cut(s) 593, 990
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 112, 1456
HapII CCGG 2 cut(s) 32, 1160
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 22, 407, 1019
HpaII CCGG 2 cut(s) 32, 1160
HphI GGTGA 2 cut(s) 677, 1237
Hpy166II GTNNAC 5 cut(s) 370, 425, 713, 897, 1057
Hpy188I TCNGA 6 cut(s) 537, 568, 613, 862, 904, 1109
Hpy8I GTNNAC 5 cut(s) 370, 425, 713, 897, 1057
Hpy99I CGWCG 3 cut(s) 19, 179, 1367
HpyAV CCTTC 2 cut(s) 1147, 1211
HpyCH4III ACNGT 2 cut(s) 464, 1234
HpyCH4IV ACGT 2 cut(s) 174, 1365
HpyCH4V TGCA 4 cut(s) 445, 532, 779, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 944, 1102, 1439
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 174, 1365
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 5 cut(s) 39, 169, 568, 576, 1135
LmnI GCTCC 6 cut(s) 75, 138, 790, 836, 1237, 1445
Lsp1109I GCAGC 2 cut(s) 791, 794
LweI GCATC 4 cut(s) 425, 541, 925, 1249
MaeI CTAG 3 cut(s) 285, 998, 1043
MaeII ACGT 2 cut(s) 174, 1365
MaeIII GTNAC 2 cut(s) 197, 556
MalI GATC 5 cut(s) 41, 171, 570, 578, 1137
MboI GATC 5 cut(s) 39, 169, 568, 576, 1135
MboII GAAGA 4 cut(s) 175, 674, 818, 1226
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 453, 1107, 1450
MluCI AATT 2 cut(s) 847, 1353
MlyI GAGTC 1 cut(s) 1013
Mph1103I ATGCAT 1 cut(s) 993
MseI TTAA 3 cut(s) 342, 1025, 1332
MslI CAYNNNNRTG 2 cut(s) 177, 695
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 2 cut(s) 32, 1160
MspR9I CCNGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 4 cut(s) 302, 944, 1102, 1439
NcoI CCATGG 3 cut(s) 118, 1278, 1451
NdeII GATC 5 cut(s) 39, 169, 568, 576, 1135
NlaIV GGNNCC 7 cut(s) 36, 113, 800, 1158, 1239, 1272, 1407
NmeAIII GCCGAG 2 cut(s) 88, 322
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 4 cut(s) 655, 700, 732, 779
PaeI GCATGC 1 cut(s) 779
PagI TCATGA 3 cut(s) 630, 1132, 1312
PciI ACATGT 2 cut(s) 696, 728
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 2 cut(s) 22, 407
PkrI GCNGC 2 cut(s) 781, 784
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 1013
PpsI GAGTC 1 cut(s) 1013
PpuMI RGGWCCY 1 cut(s) 798
PscI ACATGT 2 cut(s) 696, 728
PshAI GACNNNNGTC 1 cut(s) 1186
Psp5II RGGWCCY 1 cut(s) 798
Psp6I CCWGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
PspFI CCCAGC 1 cut(s) 978
PspGI CCWGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
PspN4I GGNNCC 7 cut(s) 36, 113, 800, 1158, 1239, 1272, 1407
PspPI GGNCC 4 cut(s) 34, 111, 798, 1157
PspPPI RGGWCCY 1 cut(s) 798
PsuI RGATCY 1 cut(s) 568
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 1 cut(s) 1198
RsaNI GTAC 1 cut(s) 1197
RseI CAYNNNNRTG 2 cut(s) 177, 695
SaqAI TTAA 3 cut(s) 342, 1025, 1332
SatI GCNGC 2 cut(s) 780, 783
Sau3AI GATC 5 cut(s) 39, 169, 568, 576, 1135
Sau96I GGNCC 4 cut(s) 34, 111, 798, 1157
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 6 cut(s) 231, 803, 969, 1140, 1179, 1242
SduI GDGCHC 3 cut(s) 453, 1107, 1450
SfaNI GCATC 4 cut(s) 425, 541, 925, 1249
SfcI CTRYAG 2 cut(s) 246, 709
SinI GGWCC 3 cut(s) 34, 798, 1157
SmiMI CAYNNNNRTG 2 cut(s) 177, 695
SphI GCATGC 1 cut(s) 779
Sse9I AATT 2 cut(s) 847, 1353
SsiI CCGC 3 cut(s) 55, 61, 747
SspMI CTAG 3 cut(s) 285, 998, 1043
StyD4I CCNGG 6 cut(s) 229, 801, 967, 1138, 1177, 1240
StyI CCWWGG 4 cut(s) 118, 136, 1278, 1451
TaaI ACNGT 2 cut(s) 464, 1234
TaiI ACGT 2 cut(s) 177, 1368
TaqI TCGA 5 cut(s) 42, 177, 476, 624, 984
TasI AATT 2 cut(s) 847, 1353
TfiI GAWTC 2 cut(s) 22, 407
Tru1I TTAA 3 cut(s) 342, 1025, 1332
Tru9I TTAA 3 cut(s) 342, 1025, 1332
TscAI CASTG 5 cut(s) 463, 469, 722, 966, 1239
TseI GCWGC 2 cut(s) 779, 782
TspDTI ATGAA 4 cut(s) 420, 1081, 1243, 1329
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 5 cut(s) 463, 469, 722, 966, 1239
VpaK11BI GGWCC 3 cut(s) 34, 798, 1157
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 4 cut(s) 655, 700, 732, 779
XmiI GTMKAC 3 cut(s) 369, 712, 1056
XspI CTAG 3 cut(s) 285, 998, 1043
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.