AT4G29735

Transmembrane protein 258-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14562639 .. 14564512
1874 bp
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UTR
Exon/CDS
Intron
AT4G29735.2

Sequence Viewer

Length: 231 bp
ATGGCGGCGAAACCGATTGCGAGTCCGATTCCGGTGGCGCTGTATCCGACTTTATCGGTGTTCACTCTTGCGATTGGTCTCGTCATTACCGCTATCTTCTTCATCTATGAAGCTACATCATCCAGGAAAAACCGAAGCGTCGGAAAGGAGCTCGCTACTTCAGCAGTTGCATCTGTCTTCTTGGGTTTTGGATCGTTGTTTTTGCTACTTGCTAGTGGTGTTTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

7.94

Weight (kDa)

9.7

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost5 PF05251 4 - 37 1.8e-06 Oligosaccharyltransferase subunit 5
Ost5 PF05251 53 - 98 3.7e-14 Oligosaccharyltransferase subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015445)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 90
AclWI GGATC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 113, 151
AluI AGCT 2 cut(s) 113, 151
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 199
AspLEI GCGC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 124
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 54
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 31
BseBI CCWGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 2 cut(s) 5, 90
BspPI GGATC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 83
BssMI GATC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 169
BsuI GTATCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 40
CseI GACGC 1 cut(s) 127
CviJI RGCY 2 cut(s) 113, 151
CviKI_1 RGCY 2 cut(s) 113, 151
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 2 cut(s) 108, 225
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 41
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 22, 28
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 27, 48, 143, 230
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 45, 109, 136
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 88, 91, 169
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 71, 121
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 191
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 153
SetI ASST 2 cut(s) 115, 153
SfaNI GCATC 1 cut(s) 179
SsiI CCGC 2 cut(s) 5, 90
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 122
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 91, 123
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.