Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Forward (+)

2785086 .. 2788373

Gene Structure 3288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGACCGATACGACGGCGTTTCAAATCGACCTGGGTAATCTCATGGCTGTGGACCTTCATCACCAATTCCCCTCCAACCCTTCTTCCAGGGAGGAATTGGTGAAGGAATATATTGCAAGAGGAACTGAGTTAGTTCAAGCTATTGCGAATAATCTTTTTAATTTGCCTTCGACTGAAGACATTGAGGGTACCCTCGTGAAGTTGCCTGCTCCAACAACTAGATTGCCCAGAGAAAAGCATATTCCAAAGCCTAAACCTCCTACAAAATGGGAACAGTTTGCCCAGAAGAAAGGTATAAAGAACCGTAAGAAAGACAAGATTGCATATGATGAGTCCAGTGAAACTTGGAAACGTCGCTATGGATATGATCATGCAAATGATGAGGATAATGTACCTATCATTGAGGCAAAGTTGACTGATGTGCCAGGGGAGGATCCCTTTGCTAAAAGACGAGAAGATAAAAAGAAACGTGTTGAGAAGCAAGACAAAAACAGGTTGCAGAACTTGAAGCAAGCTGCTAAAGTTGGTGCTTTGCCAAGTCATGTTCAACTAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCCGCACCCCAAAAGGTTACTAAAAATGAACTTGGTGATGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGGATACACACGCAAGAGCAGGAGCAAACCGATAAAATTCTGAACAAGCTAATCTCGAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAACCAAGGAAAAACCTTCAGAAGCCATTTAACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTGACAAGGGATCTAAAAGGCCATTTAACAAGGGATCTTCGAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

351

Amino Acids

39.31

Weight (kDa)

10.01

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	8 - 170	9.1e-54	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	5 cut(s)	431, 444, 991, 1015, 1039
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	2 cut(s)	668, 786
AcuI	CTGAAG	3 cut(s)	198, 885, 923
AfaI	GTAC	2 cut(s)	193, 396
AfiI	CCNNNNNNNGG	2 cut(s)	578, 740
AflIII	ACRYGT	2 cut(s)	472, 849
AgsI	TTSAA	6 cut(s)	26, 140, 511, 551, 922, 966
AjnI	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
AluBI	AGCT	5 cut(s)	143, 518, 557, 632, 799
AluI	AGCT	5 cut(s)	143, 518, 557, 632, 799
AlwI	GGATC	5 cut(s)	431, 444, 991, 1015, 1039
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	588, 913, 1016
ApeKI	GCWGC	3 cut(s)	518, 557, 641
ApoI	RAATTY	2 cut(s)	668, 786
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	4 cut(s)	56, 115, 635, 701
AsuII	TTCGAA	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	915
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	962
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	186, 891
BbvI	GCAGC	3 cut(s)	505, 544, 653
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BciVI	GTATCC	1 cut(s)	747
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	222, 554
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	4 cut(s)	519, 558, 591, 642
BlsI	GCNGC	4 cut(s)	520, 559, 592, 643
Bme1390I	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	193, 438, 583, 907
BmrFI	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BmsI	GCATC	1 cut(s)	813
BpiI	GAAGAC	2 cut(s)	186, 891
Bpu14I	TTCGAA	1 cut(s)	1037
BsaJI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 740
Bse1I	ACTGG	4 cut(s)	339, 657, 734, 916
BseBI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BseDI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BseLI	CCNNNNNNNGG	2 cut(s)	578, 740
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	339, 657, 734, 916
BseXI	GCAGC	3 cut(s)	505, 544, 653
BshFI	GGCC	3 cut(s)	590, 915, 1018
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	578, 740
BsnI	GGCC	3 cut(s)	590, 915, 1018
Bsp119I	TTCGAA	1 cut(s)	1037
Bsp1286I	GDGCHC	1 cut(s)	962
Bsp143I	GATC	5 cut(s)	370, 436, 983, 1007, 1031
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	3 cut(s)	590, 915, 1018
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	4 cut(s)	193, 438, 583, 907
BspPI	GGATC	5 cut(s)	431, 444, 991, 1015, 1039
BspQI	GCTCTTC	1 cut(s)	967
BspT104I	TTCGAA	1 cut(s)	1037
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	339, 657, 734, 916
BssECI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BssMI	GATC	5 cut(s)	370, 436, 983, 1007, 1031
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	926
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
Bst4CI	ACNGT	2 cut(s)	279, 308
Bst6I	CTCTTC	1 cut(s)	967
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	1037
BstC8I	GCNNGC	2 cut(s)	210, 516
BstDEI	CTNAG	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstKTI	GATC	5 cut(s)	373, 439, 986, 1010, 1034
BstMBI	GATC	5 cut(s)	370, 436, 983, 1007, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 647
BstNI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
BstV1I	GCAGC	3 cut(s)	505, 544, 653
BstV2I	GAAGAC	2 cut(s)	186, 891
BstX2I	RGATCY	4 cut(s)	436, 983, 1007, 1031
BstYI	RGATCY	4 cut(s)	436, 983, 1007, 1031
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	590, 915, 1018
BtsIMutI	CAGTG	2 cut(s)	346, 664
Cac8I	GCNNGC	2 cut(s)	210, 516
CaiI	CAGNNNCTG	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	192, 395
CviAII	CATG	5 cut(s)	46, 374, 545, 818, 850
CviQI	GTAC	2 cut(s)	192, 395
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	5 cut(s)	372, 438, 985, 1009, 1033
DpnII	GATC	5 cut(s)	370, 436, 983, 1007, 1031
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	967
Eco130I	CCWWGG	1 cut(s)	926
Eco24I	GRGCYC	1 cut(s)	962
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	198, 885, 923
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
EcoT14I	CCWWGG	1 cut(s)	926
EcoT38I	GRGCYC	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	926
FaeI	CATG	5 cut(s)	49, 377, 548, 821, 853
FatI	CATG	5 cut(s)	45, 373, 544, 817, 849
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FspBI	CTAG	2 cut(s)	222, 554
GluI	GCNGC	4 cut(s)	519, 558, 591, 642
HaeIII	GGCC	3 cut(s)	590, 915, 1018
HapII	CCGG	1 cut(s)	890
Hin1II	CATG	5 cut(s)	49, 377, 548, 821, 853
HincII	GTYRAC	3 cut(s)	417, 835, 847
HindII	GTYRAC	3 cut(s)	417, 835, 847
HinfI	GANTC	1 cut(s)	335
HpaI	GTTAAC	2 cut(s)	835, 847
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	4 cut(s)	56, 115, 635, 701
Hpy166II	GTNNAC	5 cut(s)	55, 417, 704, 835, 847
Hpy188I	TCNGA	2 cut(s)	792, 942
Hpy188III	TCNNGA	3 cut(s)	199, 805, 903
Hpy8I	GTNNAC	5 cut(s)	55, 417, 704, 835, 847
Hpy99I	CGWCG	2 cut(s)	19, 360
HpyAV	CCTTC	5 cut(s)	68, 93, 100, 180, 947
HpyCH4III	ACNGT	2 cut(s)	279, 308
HpyCH4IV	ACGT	2 cut(s)	355, 472
HpyCH4V	TGCA	6 cut(s)	119, 326, 377, 502, 641, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 647
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	355, 472
Hsp92II	CATG	5 cut(s)	49, 377, 548, 821, 853
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	2 cut(s)	835, 847
Kzo9I	GATC	5 cut(s)	370, 436, 983, 1007, 1031
LguI	GCTCTTC	1 cut(s)	967
LmnI	GCTCC	2 cut(s)	217, 772
Lsp1109I	GCAGC	3 cut(s)	505, 544, 653
LweI	GCATC	1 cut(s)	813
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	2 cut(s)	222, 554
MaeII	ACGT	2 cut(s)	355, 472
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	5 cut(s)	372, 438, 985, 1009, 1033
MboI	GATC	5 cut(s)	370, 436, 983, 1007, 1031
MboII	GAAGA	9 cut(s)	78, 191, 301, 470, 820, 874, 891, 954, 1026
MflI	RGATCY	4 cut(s)	436, 983, 1007, 1031
MhlI	GDGCHC	1 cut(s)	962
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	102, 239
Mox20I	TGGCCA	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	5 cut(s)	162, 834, 846, 951, 1023
MslI	CAYNNNNRTG	2 cut(s)	50, 378
Msp20I	TGGCCA	1 cut(s)	915
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
MvaI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
MwoI	GCNNNNNNNGC	2 cut(s)	638, 647
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	5 cut(s)	370, 436, 983, 1007, 1031
NlaIII	CATG	5 cut(s)	49, 377, 548, 821, 853
NlaIV	GGNNCC	4 cut(s)	193, 438, 583, 907
NspI	RCATGY	1 cut(s)	853
NspV	TTCGAA	1 cut(s)	1037
PciI	ACATGT	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	967
PkrI	GCNGC	4 cut(s)	520, 559, 592, 643
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
PspGI	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
PspN4I	GGNNCC	4 cut(s)	193, 438, 583, 907
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	4 cut(s)	436, 983, 1007, 1031
RsaI	GTAC	2 cut(s)	193, 396
RsaNI	GTAC	2 cut(s)	192, 395
RseI	CAYNNNNRTG	2 cut(s)	50, 378
SapI	GCTCTTC	1 cut(s)	967
SaqAI	TTAA	5 cut(s)	162, 834, 846, 951, 1023
SatI	GCNGC	4 cut(s)	519, 558, 591, 642
Sau3AI	GATC	5 cut(s)	370, 436, 983, 1007, 1031
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
SduI	GDGCHC	1 cut(s)	962
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	1037
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	50, 378
Sse9I	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	2 cut(s)	222, 554
StyD4I	CCNGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	2 cut(s)	279, 308
TaiI	ACGT	2 cut(s)	358, 475
TaqI	TCGA	4 cut(s)	30, 173, 806, 1037
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
TauI	GCSGC	1 cut(s)	593
Tru1I	TTAA	5 cut(s)	162, 834, 846, 951, 1023
Tru9I	TTAA	5 cut(s)	162, 834, 846, 951, 1023
TscAI	CASTG	2 cut(s)	346, 664
TseI	GCWGC	3 cut(s)	518, 557, 641
TspDTI	ATGAA	2 cut(s)	50, 630
TspRI	CASTG	2 cut(s)	346, 664
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	2 cut(s)	668, 786
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	2 cut(s)	222, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.